View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6360_low_27 (Length: 291)

Name: NF6360_low_27
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6360_low_27
NF6360_low_27
[»] chr4 (34 HSPs)
chr4 (1-264)||(2326552-2326810)
chr4 (136-242)||(14334370-14334476)
chr4 (79-242)||(26955306-26955485)
chr4 (169-252)||(6487372-6487454)
chr4 (153-218)||(29510104-29510169)
chr4 (145-253)||(51967243-51967350)
chr4 (145-255)||(56424005-56424114)
chr4 (179-255)||(29966446-29966521)
chr4 (132-219)||(33138799-33138887)
chr4 (153-220)||(32889894-32889961)
chr4 (169-255)||(21486479-21486564)
chr4 (145-255)||(25013410-25013519)
chr4 (169-255)||(40162753-40162838)
chr4 (145-214)||(23671404-23671473)
chr4 (152-220)||(871808-871875)
chr4 (152-220)||(49501219-49501287)
chr4 (152-220)||(49507284-49507352)
chr4 (145-220)||(8084207-8084282)
chr4 (169-255)||(3860238-3860323)
chr4 (169-255)||(3868995-3869080)
chr4 (145-255)||(26448595-26448704)
chr4 (152-220)||(32322513-32322581)
chr4 (152-216)||(41725564-41725628)
chr4 (152-220)||(49834520-49834588)
chr4 (172-219)||(24966576-24966623)
chr4 (145-220)||(29469161-29469236)
chr4 (156-219)||(46286708-46286771)
chr4 (169-255)||(9972737-9972822)
chr4 (154-220)||(29855963-29856029)
chr4 (169-255)||(40487713-40487797)
chr4 (136-218)||(54341591-54341673)
chr4 (154-219)||(50517192-50517257)
chr4 (172-220)||(23987644-23987692)
chr4 (145-217)||(42937441-42937513)
[»] chr3 (27 HSPs)
chr3 (90-242)||(27994744-27994896)
chr3 (152-219)||(25049870-25049937)
chr3 (169-255)||(9818616-9818701)
chr3 (149-218)||(4962763-4962832)
chr3 (118-242)||(40198698-40198822)
chr3 (145-220)||(21386512-21386587)
chr3 (152-218)||(20833344-20833410)
chr3 (149-220)||(45602449-45602520)
chr3 (145-220)||(49296114-49296189)
chr3 (152-258)||(7665552-7665657)
chr3 (152-218)||(49458358-49458424)
chr3 (152-218)||(51737374-51737440)
chr3 (145-242)||(40064254-40064351)
chr3 (149-218)||(43172927-43172996)
chr3 (152-220)||(48379595-48379663)
chr3 (136-220)||(54629296-54629380)
chr3 (145-220)||(8598657-8598732)
chr3 (178-241)||(37832549-37832612)
chr3 (169-219)||(16155163-16155213)
chr3 (152-218)||(17946675-17946741)
chr3 (168-218)||(19386941-19386991)
chr3 (164-242)||(25931858-25931936)
chr3 (152-214)||(52617659-52617721)
chr3 (132-242)||(53645328-53645438)
chr3 (172-220)||(50761807-50761855)
chr3 (154-218)||(50902998-50903062)
chr3 (152-220)||(52810803-52810871)
[»] chr1 (21 HSPs)
chr1 (120-240)||(8122188-8122308)
chr1 (130-242)||(40706178-40706289)
chr1 (149-220)||(49971627-49971698)
chr1 (108-255)||(18954450-18954597)
chr1 (169-255)||(7798485-7798570)
chr1 (79-217)||(2293327-2293475)
chr1 (152-217)||(32760133-32760198)
chr1 (145-220)||(3583583-3583658)
chr1 (153-220)||(5494783-5494850)
chr1 (152-219)||(3593266-3593333)
chr1 (169-255)||(1108337-1108422)
chr1 (152-218)||(47371609-47371675)
chr1 (152-220)||(46328432-46328500)
chr1 (145-220)||(4005086-4005161)
chr1 (152-218)||(45273015-45273081)
chr1 (149-218)||(52182347-52182416)
chr1 (154-218)||(8140919-8140983)
chr1 (172-216)||(21248529-21248573)
chr1 (170-214)||(27257910-27257954)
chr1 (149-217)||(28403977-28404045)
chr1 (152-220)||(49231453-49231521)
[»] chr5 (15 HSPs)
chr5 (149-218)||(16548877-16548946)
chr5 (145-255)||(2675102-2675211)
chr5 (136-217)||(15286551-15286634)
chr5 (169-255)||(34909556-34909641)
chr5 (153-217)||(29716827-29716891)
chr5 (178-218)||(29758706-29758746)
chr5 (145-252)||(21238787-21238893)
chr5 (145-214)||(5651215-5651284)
chr5 (152-220)||(1460833-1460901)
chr5 (152-220)||(4240153-4240221)
chr5 (145-220)||(7125193-7125268)
chr5 (169-255)||(33892894-33892979)
chr5 (169-214)||(24258535-24258580)
chr5 (154-218)||(13926380-13926444)
chr5 (136-220)||(37014301-37014385)
[»] chr6 (15 HSPs)
chr6 (132-255)||(7835377-7835500)
chr6 (169-255)||(8779632-8779717)
chr6 (169-217)||(13461374-13461422)
chr6 (136-242)||(15381529-15381636)
chr6 (149-218)||(31535091-31535160)
chr6 (169-242)||(31996299-31996372)
chr6 (132-219)||(28900851-28900939)
chr6 (145-220)||(1463698-1463773)
chr6 (145-220)||(6788098-6788173)
chr6 (145-220)||(10113807-10113882)
chr6 (132-206)||(33641301-33641376)
chr6 (154-216)||(7497548-7497610)
chr6 (152-218)||(16438706-16438772)
chr6 (181-255)||(21199518-21199591)
chr6 (152-217)||(31975686-31975751)
[»] chr7 (27 HSPs)
chr7 (163-259)||(27148805-27148900)
chr7 (154-220)||(48136922-48136988)
chr7 (151-220)||(43172152-43172221)
chr7 (152-220)||(37972569-37972637)
chr7 (172-255)||(35313521-35313603)
chr7 (170-255)||(14732347-14732431)
chr7 (168-220)||(26201840-26201892)
chr7 (153-217)||(41827776-41827840)
chr7 (169-220)||(12740815-12740866)
chr7 (145-220)||(14741424-14741499)
chr7 (152-217)||(11735224-11735289)
chr7 (132-220)||(32884216-32884305)
chr7 (169-218)||(33497144-33497193)
chr7 (168-220)||(16709433-16709485)
chr7 (168-220)||(17683669-17683721)
chr7 (136-220)||(29893417-29893501)
chr7 (169-260)||(21024025-21024115)
chr7 (178-242)||(42043349-42043409)
chr7 (154-220)||(28034542-28034608)
chr7 (152-218)||(37328354-37328420)
chr7 (152-218)||(44256447-44256513)
chr7 (155-220)||(8675776-8675841)
chr7 (152-220)||(4639908-4639976)
chr7 (172-220)||(29585959-29586007)
chr7 (188-220)||(33383119-33383151)
chr7 (178-242)||(37392684-37392748)
chr7 (172-220)||(39028532-39028580)
[»] scaffold1128 (1 HSPs)
scaffold1128 (145-220)||(932-1007)
[»] chr8 (19 HSPs)
chr8 (152-219)||(24067105-24067172)
chr8 (149-216)||(41393958-41394025)
chr8 (152-220)||(32497988-32498056)
chr8 (169-256)||(1527956-1528042)
chr8 (145-255)||(28317099-28317208)
chr8 (145-214)||(6388153-6388222)
chr8 (169-218)||(37131338-37131387)
chr8 (152-220)||(10295025-10295093)
chr8 (152-212)||(27878669-27878729)
chr8 (152-212)||(28018850-28018910)
chr8 (149-220)||(43166359-43166430)
chr8 (152-218)||(8029875-8029941)
chr8 (154-220)||(9288182-9288248)
chr8 (154-220)||(42305292-42305358)
chr8 (179-216)||(12522483-12522520)
chr8 (152-208)||(12522542-12522598)
chr8 (152-216)||(17234716-17234780)
chr8 (152-220)||(31625755-31625823)
chr8 (154-218)||(43308196-43308260)
[»] chr2 (19 HSPs)
chr2 (169-255)||(38413506-38413591)
chr2 (153-218)||(13833107-13833172)
chr2 (149-220)||(40829634-40829705)
chr2 (140-242)||(30850244-30850346)
chr2 (169-253)||(13898442-13898525)
chr2 (169-253)||(14039059-14039142)
chr2 (152-220)||(25288610-25288678)
chr2 (153-220)||(214945-215012)
chr2 (132-242)||(12877662-12877773)
chr2 (145-220)||(18899956-18900031)
chr2 (151-257)||(11153384-11153489)
chr2 (152-218)||(15926378-15926444)
chr2 (145-218)||(3991773-3991846)
chr2 (145-214)||(15224234-15224303)
chr2 (145-214)||(2308742-2308811)
chr2 (169-218)||(33262853-33262902)
chr2 (154-218)||(1833743-1833807)
chr2 (172-220)||(10657877-10657925)
chr2 (152-220)||(33136063-33136131)
[»] scaffold0042 (1 HSPs)
scaffold0042 (153-220)||(57752-57819)
[»] scaffold0246 (2 HSPs)
scaffold0246 (145-255)||(1331-1440)
scaffold0246 (169-255)||(25652-25736)
[»] scaffold0110 (1 HSPs)
scaffold0110 (149-220)||(39319-39390)
[»] scaffold0433 (1 HSPs)
scaffold0433 (169-255)||(354-439)
[»] scaffold0573 (1 HSPs)
scaffold0573 (132-219)||(8855-8943)
[»] scaffold1504 (1 HSPs)
scaffold1504 (154-220)||(1313-1379)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 2326552 - 2326810
Alignment:
Q  1 cgttatgttgtacgttttttaaaaatgaattgaatattaattgaaaaatggccaaaacaacnnnnnnnnnnnnnctgattttttaaaaagtaaactcgca 100  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||  |||||||||||              ||  ||||||||||||| ||||||||    
T  2326552 cgttatgttgtatgttttttaaaaatgaattggatattaattgaaaaccggccaaaacaa-----aaaagaaaactacttttttaaaaagttaactcgca 2326646  T
Q  101 aattcgtacgagtttacccgattttaagtcttgttaactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||||| ||    
T  2326647 aattcgtacgagtttacccgattttaagtcttgttaactcggtcaacttttcaattttactagaaaacaagtttacatccaagtttacacgattttggta 2326746  T
Q  201 cctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaacattgcattca 264  Q
    |||||||||||||| || | | |||||||||||||||||||||||||||| |||||||||||||    
T  2326747 cctaaaaacgtaaattcaggcgagtttacgttttaacactcggatttgtgaaacattgcattca 2326810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 136 - 242
Target Start/End: Complemental strand, 14334476 - 14334370
Alignment:
Q  136 aactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgtttta 235  Q
    |||| |||||||||| ||||||||| | ||||  ||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||    
T  14334476 aactaggtcaactttccgattttaccaaaaaacaagtttacgtccgagtttacgcgattttggtacctaaaaacgtaaactcgggcaagtttacgtttta 14334377  T
Q  236 acactcg 242  Q
    |||||||    
T  14334376 acactcg 14334370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 26955485 - 26955306
Alignment:
Q  79 ttttttaaaaagtaaactcgcaaattcgtacgagtttacccgattttaagtcttgttaactcggtcaa----------cttttcgattttactagaaaat 168  Q
    |||||||||| ||||||||||||| ||| ||||||||| ||||||||||| | |||||||||||||||          |||||||||||||| | ||||     
T  26955485 ttttttaaaaggtaaactcgcaaactcgaacgagtttatccgattttaagccgtgttaactcggtcaaactcgacaaacttttcgattttaccaaaaaaa 26955386  T
Q  169 ------gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcg 242  Q
          || ||||| |  || ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  26955385 aaaaacgaatttacctttgaatttacacgattttgaaacctaaaaacgtaaattcgggcaagtttacgttttaacactcg 26955306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 6487372 - 6487454
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtgga 252  Q
    |||||||| |||||||| ||||| |||||  |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  6487372 gagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgggcaagtttacgtgttaacactc-gatttgtgga 6487454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 29510104 - 29510169
Alignment:
Q  153 gattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||| ||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  29510104 gattttaccagaaattgagtttacatcagagttaacacgattttgatacctaaacacgtaaactcg 29510169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 51967350 - 51967243
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcgga 244  Q
    ||||||||||||| || | |||  |||||||| |||||||| ||||| |||||  |||||||||||||||||||  | ||||||||| ||||||||| ||    
T  51967350 aacttttcgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgaacgagtttacgtgttaacactc-ga 51967252  T
Q  245 tttgtggaa 253  Q
    |||||||||    
T  51967251 tttgtggaa 51967243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 56424005 - 56424114
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcgga 244  Q
    |||||| |||||| |||| |||  |||||||| |||||||| ||||| |||||  |||||||||||||||||||| | ||||||||| |||||| || |     
T  56424005 aactttccgatttcactaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacattc-gc 56424103  T
Q  245 tttgtggaaca 255  Q
    |||||||||||    
T  56424104 tttgtggaaca 56424114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 29966446 - 29966521
Alignment:
Q  179 ccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    ||||||||||||| |||||  |||||||||||||||||||| | ||||||||  ||||||||| |||||||||||||    
T  29966446 ccgagtttacacgtttttgccacctaaaaacgtaaactcgggcgagtttacgagttaacactc-gatttgtggaaca 29966521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 33138887 - 33138799
Alignment:
Q  132 tgttaactcggtcaa-cttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    ||||||||| ||||| | || ||||||||| |||||  |||||||| |||||||| ||||||||||| |||||||| ||||||||||||    
T  33138887 tgttaactcagtcaaaccttccgattttaccagaaatcgagtttacctccgagttaacacgattttggtacctaaacacgtaaactcgg 33138799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 32889961 - 32889894
Alignment:
Q  153 gattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||| ||||| ||||||||||||  |||| ||||||||||| |||||||| |||||||||||||    
T  32889961 gattttaccagaaattgagtttacatcaaagttaacacgattttggtacctaaacacgtaaactcggt 32889894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 21486564 - 21486479
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| | |||||||||||| |||||  |||||||||||||||||||  | ||||||||  ||||||||| |||||||||||||    
T  21486564 gagtttaccttcgagtttacacggttttgccacctaaaaacgtaaactcgaacgagtttacgagttaacactc-gatttgtggaaca 21486479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 25013519 - 25013410
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcgga 244  Q
    |||||| |||||| | || ||| ||||||||  |||||||| ||| | |||||  |||||||||||||||||||  | ||||||||| ||||||||| ||    
T  25013519 aactttccgatttcattaaaaattgagtttagctccgagttaacatgtttttgccacctaaaaacgtaaactcgaacgagtttacgtgttaacactc-ga 25013421  T
Q  245 tttgtggaaca 255  Q
    |||||||||||    
T  25013420 tttgtggaaca 25013410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 40162838 - 40162753
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||  ||||| |||||||| |||||  |||||||||||||||||||| | ||||||||  ||||||||| |||||||||||||    
T  40162838 gagtttatctccgaatttacacgtttttgccacctaaaaacgtaaactcggacgagtttacgagttaacactc-gatttgtggaaca 40162753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 23671404 - 23671473
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaa 214  Q
    ||||||||||||| || |||||  |||||||| |||||||| ||||||||||| |||||||| |||||||    
T  23671404 aacttttcgatttcaccagaaatcgagtttacctccgagttaacacgattttggtacctaaacacgtaaa 23671473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 871875 - 871808
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| |||||||| ||||||||| | ||||||||||||||||||||||    
T  871875 cgattttaccagaaatcgagtttacctccgagttgacacgatttgg-tacctaaaaacgtaaactcggt 871808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 49501219 - 49501287
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  49501219 cgattttaccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 49501287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 49507284 - 49507352
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  49507284 cgattttaccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 49507352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 8084282 - 8084207
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| |||||||||||||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  8084282 aactttccgattttactagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 8084207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 3860238 - 3860323
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||| ||||| |||||  || ||||||||||||||||  | ||||||||| ||||||||| |||||||| ||||    
T  3860238 gagtttacctccgagttaacacgtttttgccacataaaaacgtaaactcgaacgagtttacgtgttaacactc-gatttgtgaaaca 3860323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 3868995 - 3869080
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||| ||||| |||||  || ||||||||||||||||  | ||||||||| ||||||||| |||||||| ||||    
T  3868995 gagtttacctccgagttaacacgtttttgccacataaaaacgtaaactcgaacgagtttacgtgttaacactc-gatttgtgaaaca 3869080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 26448704 - 26448595
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcgga 244  Q
    |||||| |||||| || | ||| | ||||||| |||||||||||| | |||||  ||||||||| |||||||||  | ||||||||  ||||||||| ||    
T  26448704 aactttccgatttcaccaaaaattaagtttacctccgagtttacatgtttttgccacctaaaaatgtaaactcgagcgagtttacgagttaacactc-ga 26448606  T
Q  245 tttgtggaaca 255  Q
    |||||||||||    
T  26448605 tttgtggaaca 26448595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 32322581 - 32322513
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| || || || ||||||||||  ||||||||||||||||||||||    
T  32322581 cgattttaccagaaaccgagtttacctcagaattaacacgatttttgtacctaaaaacgtaaactcggt 32322513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 41725628 - 41725564
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaact 216  Q
    ||||||||| |||||  |||||||| || ||||| ||||||||||  ||||||||||||||||||    
T  41725628 cgattttaccagaaatcgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaact 41725564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 49834520 - 49834588
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| || ||||| ||||||||||  || |||||||||||||||||||    
T  49834520 cgattttaccagaaaccgagtttacctcagagttaacacgatttttgtagctaaaaacgtaaactcggt 49834588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 24966576 - 24966623
Alignment:
Q  172 tttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    ||||| |||||||| ||||||||||| |||||||| ||||||||||||    
T  24966576 tttacttccgagttaacacgattttggtacctaaacacgtaaactcgg 24966623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 29469236 - 29469161
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| ||||||||| |||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  29469236 aactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 29469161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 46286771 - 46286708
Alignment:
Q  156 tttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    |||||||||||  |||||||| |  | ||| ||||||||||| |||||||||||||||||||||    
T  46286771 tttactagaaatcgagtttaccttagtgttaacacgattttggtacctaaaaacgtaaactcgg 46286708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 9972822 - 9972737
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||||||||| |||||  |||||||||| ||||||||  | | ||||||  |||| |||| |||||||||||||    
T  9972822 gagtttacctccgagtttacacgtttttgccacctaaaaacataaactcgagcgaatttacgagttaatactc-gatttgtggaaca 9972737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 29856029 - 29855963
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||| |||||  |||||||| || ||||| ||||||||||  ||| ||||||||||||||||||    
T  29856029 attttaccagaaatcgagtttacctcagagttaacacgatttttgtacataaaaacgtaaactcggt 29855963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 40487713 - 40487797
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||| ||||| |||||  |||||||||||||||||| |   ||||||||  ||||||||| |||||||||||||    
T  40487713 gagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcag-agagtttacgagttaacactc-gatttgtggaaca 40487797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 54341673 - 54341591
Alignment:
Q  136 aactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||| | ||| |||| ||||||| |||||  || ||||| || ||||||||||||||||  |||||||||| |||||||||    
T  54341673 aactcgttaaacctttcaattttaccagaaaccgattttacctcagagtttacacgatttttgtacctaaaaatgtaaactcg 54341591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 50517257 - 50517192
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    ||||||| |||||  |||||||| ||  |||| ||||||||||| |||||||| ||||||||||||    
T  50517257 attttaccagaaatcgagtttacctcaaagttaacacgattttggtacctaaacacgtaaactcgg 50517192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 23987692 - 23987644
Alignment:
Q  172 tttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  23987692 tttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 23987644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 42937441 - 42937513
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    |||||||||||||||| |||||  |||||||| |||||||| | ||| ||||   ||||||| ||||||||||    
T  42937441 aacttttcgattttaccagaaatcgagtttacctccgagttaaaacgcttttagcacctaaatacgtaaactc 42937513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 242
Target Start/End: Original strand, 27994744 - 27994896
Alignment:
Q  90 gtaaactcgcaaattcgtacgagtttacccgattttaagtcttgttaactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttaca 189  Q
    ||||||||||||| | | |||||||||||| |||||||| | |  ||| |||||||||| || |||||||| | |||| |||||| | ||||||||||||    
T  27994744 gtaaactcgcaaactaggacgagtttacccaattttaagccgtactaaatcggtcaactctttgattttaccaaaaaacgagttttcgtccgagtttaca 27994843  T
Q  190 cgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcg 242  Q
     ||||||| | |||||| |||||||||||| | ||||||||||||||||||||    
T  27994844 tgattttggttcctaaacacgtaaactcgggcgagtttacgttttaacactcg 27994896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 25049937 - 25049870
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    |||||||||||||||  |||||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  25049937 cgattttactagaaatcgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcgg 25049870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 9818616 - 9818701
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||| ||||| |||||  |||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||    
T  9818616 gagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgggcgagtttacgtgttaacactc-gatttgtggaaca 9818701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 4962763 - 4962832
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||||||| ||||  |||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  4962763 tttcgattttacttgaaatcgagtttacctccaagttaacacgattttgatacctaaaaacgtaaactcg 4962832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 40198698 - 40198822
Alignment:
Q  118 ccgattttaagtcttgttaactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    ||||||||||||| |||||||||| |||||||||||||||||| | ||||  ||||||  ||||||| ||||||||||||  | |||||||  || ||||    
T  40198698 ccgattttaagtcgtgttaactcgttcaacttttcgattttaccaaaaaacaagtttatctccgagtctacacgattttggcatctaaaaagatagactc 40198797  T
Q  218 ggtcaagtttacgttttaacactcg 242  Q
     | |   ||||||||||||||||||    
T  40198798 agacggatttacgttttaacactcg 40198822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 21386512 - 21386587
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||||||||||| |||||  |||||||| ||  |||| |||||||||||||||||||||| |||||||||||    
T  21386512 aacttttcgattttaccagaaatcgagtttacctctaagttaacacgattttgatacctaaaaatgtaaactcggt 21386587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 20833410 - 20833344
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||| ||||| ||||||||| || ||||| ||||||||||  ||||||||||||||||||||    
T  20833410 cgattttaccagaaactgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcg 20833344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 45602449 - 45602520
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||||||| ||||| ||||||||| | |||||| |||| ||||| ||||| ||||||||||| |||||    
T  45602449 tttcgattttaccagaaattgagtttacctacgagttgacacaattttaatacccaaaaacgtaaattcggt 45602520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 49296189 - 49296114
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||||||||||| |||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  49296189 aacttttcgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 49296114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 7665657 - 7665552
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtgg 251  Q
    ||||||||| | |||  |||||||| |||||||| ||||||||||| || ||||||||||||||| ||| || |   ||  ||||||||| |||||||||    
T  7665657 cgattttaccaaaaatcgagtttacctccgagttaacacgattttggtagctaaaaacgtaaactaggtaaattcggcgagttaacactc-gatttgtgg 7665559  T
Q  252 aacattg 258  Q
    |||||||    
T  7665558 aacattg 7665552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 49458424 - 49458358
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||| |||||  |||||||| || ||||| |||| ||||||||||||||| |||||||||||    
T  49458424 cgattttaccagaaatcgagtttacttcagagttaacacaattttgatacctaaacacgtaaactcg 49458358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 51737374 - 51737440
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||||||||||  |||||||| || ||||| ||||||||||  |||||||||| |||||||||    
T  51737374 cgattttactagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaatgtaaactcg 51737440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 40064351 - 40064254
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcg 242  Q
    ||||||||||||| || | ||| | | ||||| ||| |||||||||| |||||  |||||||||||||||||||| | | ||||||  ||||||||||    
T  40064351 aacttttcgatttcaccaaaaactaaatttacctccaagtttacacgtttttgccacctaaaaacgtaaactcggacgaatttacgaattaacactcg 40064254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 43172996 - 43172927
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||||||| |||||  |||||||| |||||||  ||||||||||| |||||||| || ||||||||    
T  43172996 tttcgattttaccagaaatcgagtttacctccgagtcaacacgattttggtacctaaacacataaactcg 43172927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 48379663 - 48379595
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| || || || ||||||||||  ||||||||||||||||||||||    
T  48379663 cgattttaccagaaatcgagtttacctcagaattaacacgatttttgtacctaaaaacgtaaactcggt 48379595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 54629380 - 54629296
Alignment:
Q  136 aactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| | ||| ||||| |||||  |||||  |||||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  54629380 aactcgttaaacctttcgcttttatcagaaatcgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 54629296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 8598732 - 8598657
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| ||||||||| |||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  8598732 aactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 8598657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 37832612 - 37832549
Alignment:
Q  178 tccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactc 241  Q
    ||||| |||||||| |||||  |||||||||||||||||||| | ||||||||  |||||||||    
T  37832612 tccgaatttacacgtttttgccacctaaaaacgtaaactcggacgagtttacgagttaacactc 37832549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 16155213 - 16155163
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    |||||||| || ||||| ||||||||||| |||||||||||||||| ||||    
T  16155213 gagtttacctcagagttaacacgattttggtacctaaaaacgtaaattcgg 16155163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 17946741 - 17946675
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||| |||||  |||||||| || ||||| ||| ||||||  ||||||||||||||||||||    
T  17946741 cgattttaccagaaaccgagtttacctcagagttaacatgatttttgtacctaaaaacgtaaactcg 17946675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 19386941 - 19386991
Alignment:
Q  168 tgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||||||||||||| ||||  |||||| ||||||| |||||||||||    
T  19386941 tgagtttacatccgagttaacacatttttgacacctaaatacgtaaactcg 19386991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 25931936 - 25931858
Alignment:
Q  164 aaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcg 242  Q
    ||||||| ||||| | ||||| ||||||||||||| | |||||||| |||||||   | | ||||||||||||||||||    
T  25931936 aaaatgaatttaccttcgagtatacacgattttgacatctaaaaacataaactcaaacgaatttacgttttaacactcg 25931858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 52617659 - 52617721
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaa 214  Q
    ||||||||| |||||  |||||||| || ||||| ||||||||||  ||||||||||||||||    
T  52617659 cgattttaccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaa 52617721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 242
Target Start/End: Original strand, 53645328 - 53645438
Alignment:
Q  132 tgttaactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgt 231  Q
    ||||||||||   |||||| |||||| || | ||| ||||||||| || ||||||| ||| |||||  |||||||||||| ||||| | | ||||||||     
T  53645328 tgttaactcgtcaaactttccgatttcaccaaaaactgagtttacctctgagtttatacgtttttgccacctaaaaacgttaactcagacgagtttacga 53645427  T
Q  232 tttaacactcg 242  Q
     ||||||||||    
T  53645428 gttaacactcg 53645438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 50761807 - 50761855
Alignment:
Q  172 tttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  50761807 tttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 50761855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 50902998 - 50903062
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||| |||||  |||||||| || ||||| ||||||||||  ||| ||||||||||||||||    
T  50902998 attttaccagaaaccgagtttacctcagagttaacacgatttttgtacataaaaacgtaaactcg 50903062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 52810871 - 52810803
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| ||||   |||||||| || ||||| |||| |||||  ||||||||||||||||||||||    
T  52810871 cgattttaccagaacccgagtttacctcagagttaacacaatttttgtacctaaaaacgtaaactcggt 52810803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 8122308 - 8122188
Alignment:
Q  120 gattttaagtcttgttaactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    ||||||||| | ||||||||||||||||||||| ||||||| | |||| |||||||  | |||||||||||||||||| ||  |||||||||||||||||    
T  8122308 gattttaagccgtgttaactcggtcaacttttcaattttaccaaaaaacgagtttaagttcgagtttacacgattttggtatttaaaaacgtaaactcgg 8122209  T
Q  220 tcaagtttacgttttaacact 240  Q
     ||| |||| |||||||||||    
T  8122208 acaaatttatgttttaacact 8122188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 40706289 - 40706178
Alignment:
Q  130 cttgttaactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttac 229  Q
    |||||||||||| |||||||||| ||||||| | ||||||||||||  ||||||||||||||||||||||||||||||| | |||||||| | | ||||     
T  40706289 cttgttaactcgatcaacttttcaattttaccaaaaaatgagtttatgtccgagtttacacgattttgatacctaaaaatg-aaactcggacgaatttat 40706191  T
Q  230 gttttaacactcg 242  Q
    || ||||||||||    
T  40706190 gtattaacactcg 40706178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 49971627 - 49971698
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||||||| |||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||    
T  49971627 tttcgattttaccagaaaacgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcggt 49971698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 18954597 - 18954450
Alignment:
Q  108 acgagtttacccgattttaagtcttgttaactcggtcaa-cttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaa 206  Q
    |||||||||| ||| |||||  | ||||||||||||||| |||| |||||| || | |||  |||||||| |||||||| ||||| |||||  |||||||    
T  18954597 acgagtttacacgagtttaacacatgttaactcggtcaaactttccgatttcaccaaaaaccgagtttacgtccgagttaacacgtttttgccacctaaa 18954498  T
Q  207 aacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    ||||||||||||| | | ||||||  ||||||||| |||||||||||||    
T  18954497 aacgtaaactcgggcgaatttacgagttaacactc-gatttgtggaaca 18954450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 7798570 - 7798485
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||| ||||| |||||  |||||||||||||||||||| | ||||||||| |||| |||| |||||||||||||    
T  7798570 gagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgggcgagtttacgtgttaatactc-gatttgtggaaca 7798485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 217
Target Start/End: Original strand, 2293327 - 2293475
Alignment:
Q  79 ttttttaaaaagtaaactcgcaaattcgtacgagtttacccgattttaagtcttgttaac----------tcggtcaacttttcgattttactagaaaat 168  Q
    |||||||||| ||||| ||||||||||| |||| ||||||| |||||||| | |||||||          ||||||||||||  |||||||  | |||||    
T  2293327 ttttttaaaaggtaaagtcgcaaattcggacgattttacccaattttaagccatgttaacttggtcaaaatcggtcaactttctgattttatcaaaaaat 2293426  T
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    |||| ||| | ||||||||||||||||||  |||||| |||||||||||    
T  2293427 gagtctaccttcgagtttacacgattttggcacctaacaacgtaaactc 2293475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 32760133 - 32760198
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    |||||||||||||||  |||||||| || ||||| ||||||||||| |||||||||||||||||||    
T  32760133 cgattttactagaaaccgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactc 32760198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 3583583 - 3583658
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| |||||||||||||||  |||||||| ||  |||| ||||||||| | ||||||||||||||||||||||    
T  3583583 aactttccgattttactagaaaccgagtttacttctaagttaacacgatttcggtacctaaaaacgtaaactcggt 3583658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 5494783 - 5494850
Alignment:
Q  153 gattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||| |||||  |||||||| || ||||| ||||||||||| ||||||||||||||||||||||    
T  5494783 gattttaccagaaaccgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcggt 5494850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 3593333 - 3593266
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    |||||||| ||||||  || ||||| |||||||| ||||||||||||||||||||||  |||||||||    
T  3593333 cgattttattagaaatcgaatttacctccgagttaacacgattttgatacctaaaaatataaactcgg 3593266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 1108422 - 1108337
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||||||||| ||||   |||||||||||||||||| | | | ||||||  ||||||||| |||||||||||||    
T  1108422 gagtttacctccgagtttacacgtttttaccacctaaaaacgtaaactcagacgaatttacgagttaacactc-gatttgtggaaca 1108337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 47371609 - 47371675
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||| |||||  |||||||| |||||||| ||||||||||| |||||||  |||||||||||    
T  47371609 cgattttaccagaaatcgagtttacctccgagttaacacgattttggtacctaagtacgtaaactcg 47371675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 46328500 - 46328432
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||  |||||  |||||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  46328500 cgattttaacagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 46328432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 4005161 - 4005086
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| ||||||||| |||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  4005161 aactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 4005086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 45273081 - 45273015
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||| |||||  |||||||| || ||||| |||| |||||  ||||||||||||||||||||    
T  45273081 cgattttaccagaaaccgagtttacctcagagttaacacaatttttgtacctaaaaacgtaaactcg 45273015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 52182416 - 52182347
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||||||| |||||  || ||||| ||||| || |||||||||   ||||||||||||||||||||    
T  52182416 tttcgattttaccagaaatcgaatttacctccgaattgacacgatttcagtacctaaaaacgtaaactcg 52182347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 8140919 - 8140983
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||| |||||  || ||||| || ||||| ||||||||||  ||||||||||||||||||||    
T  8140919 attttaccagaaatcgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcg 8140983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 21248529 - 21248573
Alignment:
Q  172 tttacatccgagtttacacgattttgatacctaaaaacgtaaact 216  Q
    ||||| ||| |||| |||||||||||| |||||||||||||||||    
T  21248529 tttacttccaagttaacacgattttgacacctaaaaacgtaaact 21248573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 27257910 - 27257954
Alignment:
Q  170 agtttacatccgagtttacacgattttgatacctaaaaacgtaaa 214  Q
    ||||||| || ||||| ||||||||||| ||||||||||||||||    
T  27257910 agtttacctcggagttgacacgattttggtacctaaaaacgtaaa 27257954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 28403977 - 28404045
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    ||||||||||| ||||||  || ||||| | | |||| ||||||||||| |||||||||| ||||||||    
T  28403977 tttcgattttattagaaaccgaatttaccttcaagttaacacgattttggtacctaaaaatgtaaactc 28404045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 49231521 - 49231453
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||| ||| |||||  |||||||| || ||||| ||||||||||  ||||||||||| ||||||||||    
T  49231521 cgattataccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacataaactcggt 49231453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 16548877 - 16548946
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||||||| ||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  16548877 tttcgattttaccagaaattgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcg 16548946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 2675102 - 2675211
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcgga 244  Q
    ||||||||||||| || | |||  |||||||| |||||||| ||||| |||||  |||||||||||||||||||| | ||||||||| ||||||||| ||    
T  2675102 aacttttcgatttcaccaaaaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgggcgagtttacgtattaacactc-ga 2675200  T
Q  245 tttgtggaaca 255  Q
    |||||| ||||    
T  2675201 tttgtgaaaca 2675211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 15286551 - 15286634
Alignment:
Q  136 aactcggtcaacttttcgattttactagaaaat--gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    ||||||||||||||| ||||||||| | ||||   |||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  15286551 aactcggtcaactttccgattttaccaaaaaaaaagagtttatctccgagtttacacgattttgacacctaaaaacgtaaactc 15286634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 34909641 - 34909556
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| ||||| || ||||| |||||  |||||||||||||||||||  | ||||||||| ||||||||| |||||||||||||    
T  34909641 gagtttacctccgaattaacacgtttttgccacctaaaaacgtaaactcgagcgagtttacgtgttaacactc-gatttgtggaaca 34909556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 29716827 - 29716891
Alignment:
Q  153 gattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    |||||||| |||||   ||||||| | |||||| |||||||||||||||||||||||||||||||    
T  29716827 gattttaccagaaatcaagtttaccttcgagttaacacgattttgatacctaaaaacgtaaactc 29716891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 29758746 - 29758706
Alignment:
Q  178 tccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  29758746 tccgagttaacacgattttgatacctaaaaacgtaaactcg 29758706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 21238787 - 21238893
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcgga 244  Q
    |||||| ||||||||| | |||  |||||||| |||||||| ||||| |||||  | ||||||||||||| |||| | | ||||||| ||||||||| ||    
T  21238787 aactttccgattttaccaaaaaccgagtttacctccgagttaacacgtttttgccatctaaaaacgtaaaatcggacgaatttacgtgttaacactc-ga 21238885  T
Q  245 tttgtgga 252  Q
    ||||||||    
T  21238886 tttgtgga 21238893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 5651215 - 5651284
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaa 214  Q
    |||||||| |||| || |||||  |||||||| |||||||| ||||||||||| |||||||| |||||||    
T  5651215 aacttttcaatttcaccagaaatcgagtttacctccgagttaacacgattttggtacctaaacacgtaaa 5651284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 1460833 - 1460901
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| || ||||| |||| |||||  ||||||||||||||||||||||    
T  1460833 cgattttaccagaaaccgagtttacctctgagttaacacaatttttgtacctaaaaacgtaaactcggt 1460901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 4240153 - 4240221
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| || ||||| ||||||||||   |||||||||||||||||||||    
T  4240153 cgattttaccagaaacggagtttacctcagagttaacacgatttttgcacctaaaaacgtaaactcggt 4240221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 7125193 - 7125268
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| ||||||||| |||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  7125193 aactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 7125268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 33892894 - 33892979
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||| ||||| |||||  ||||||||||||||| |||  | | ||||||| ||||||||| |||||||| ||||    
T  33892894 gagtttacctccgagttaacacgtttttgccacctaaaaacgtaaattcgaacgaatttacgtgttaacactc-gatttgtgcaaca 33892979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 24258535 - 24258580
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaa 214  Q
    |||||||| |||||||||||||| |||||  |||||||||||||||    
T  24258535 gagtttacctccgagtttacacgtttttgccacctaaaaacgtaaa 24258580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 13926444 - 13926380
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||| |||||  || ||||| || ||||| ||||||||||  ||||||||||||||||||||    
T  13926444 attttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcg 13926380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 37014385 - 37014301
Alignment:
Q  136 aactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| | ||| |||| ||||||| |||||  || ||||| || ||||| ||||||||||  |||||||||| |||||||||||    
T  37014385 aactcgttaaacctttcaattttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggt 37014301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 255
Target Start/End: Original strand, 7835377 - 7835500
Alignment:
Q  132 tgttaactcggtcaa-cttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacg 230  Q
    ||||||||||||||| |||| |||||| || | |||  |||||||| ||||| || ||||| |||||  |||||||||||||||||||| | ||||||||    
T  7835377 tgttaactcggtcaaactttccgatttcaccaaaaaccgagtttacctccgacttaacacgtttttgccacctaaaaacgtaaactcggacgagtttacg 7835476  T
Q  231 ttttaacactcggatttgtggaaca 255  Q
    | ||||||||| |||||||||||||    
T  7835477 tgttaacactc-gatttgtggaaca 7835500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 8779632 - 8779717
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||| ||||| |||||  |||||||||||||||||||| | ||||||||  ||||||||| |||||||| ||||    
T  8779632 gagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcggacgagtttacgagttaacactc-gatttgtgaaaca 8779717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 13461422 - 13461374
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    |||||||| |||||||| ||||||||||||||| |||||||||||||||    
T  13461422 gagtttacctccgagttgacacgattttgatacataaaaacgtaaactc 13461374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 15381529 - 15381636
Alignment:
Q  136 aactcggtcaacttttcgattttactagaaaatgagtttacatc-cgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgtttt 234  Q
    |||||| |||||||| | ||||||  | |||| |||||||| || | | |||| |||| ||||| ||||||||||||||||| | || ||||||||||||    
T  15381529 aactcgatcaactttccaattttatcaaaaaacgagtttacctctcaaatttatacgactttgacacctaaaaacgtaaacttgatcgagtttacgtttt 15381628  T
Q  235 aacactcg 242  Q
    ||||||||    
T  15381629 aacactcg 15381636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 31535091 - 31535160
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||||||| |||||  |||||| | || ||||| |||| ||||||||||||||||| |||||||||    
T  31535091 tttcgattttaccagaaatcgagtttgcctcagagttaacacaattttgatacctaaaaatgtaaactcg 31535160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 31996299 - 31996372
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcg 242  Q
    |||||||| |||||||| ||||| |||||  |||||||||||||||||||  | ||||| ||| ||||||||||    
T  31996299 gagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgagcgagtttgcgtgttaacactcg 31996372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Original strand, 28900851 - 28900939
Alignment:
Q  132 tgttaactcggtcaa-cttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    ||||||||||| ||| | || ||||||||| |||||  |||||||| || ||||| ||||||||||| |||||||| | ||||||||||    
T  28900851 tgttaactcggccaaaccttccgattttaccagaaatcgagtttacctcagagttaacacgattttggtacctaaacatgtaaactcgg 28900939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 1463698 - 1463773
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| ||||||||| |||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  1463698 aactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 1463773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 6788173 - 6788098
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| ||||||||| |||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  6788173 aactttccgattttaccagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 6788098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 10113807 - 10113882
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| ||||||||| | |||| |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  10113807 aactttccgattttaccaaaaaacgagtttacctccgagttaacacgtttttaggacctaaacacgtaaactcggt 10113882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 33641301 - 33641376
Alignment:
Q  132 tgttaactcggtcaa-cttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaa 206  Q
    ||||||||||||||| | ||  |||||||| |  || |||||||||||| ||||| ||||||||||||||||||||    
T  33641301 tgttaactcggtcaaaccttatgattttaccattaattgagtttacatcagagttaacacgattttgatacctaaa 33641376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 7497610 - 7497548
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaact 216  Q
    ||||||| |||||  |||||||| || ||||| ||||||||||  ||||||||||||||||||    
T  7497610 attttaccagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaact 7497548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 16438772 - 16438706
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||| ||||   |||||||| ||| |||| ||||||||||  ||||||||||||||||||||    
T  16438772 cgattttaccagaagtcgagtttacctccaagttaacacgatttttgtacctaaaaacgtaaactcg 16438706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 21199591 - 21199518
Alignment:
Q  181 gagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    ||||| ||||| |||||  |||||||||||||||||  | ||||||||||  ||||||||| |||||||||||||    
T  21199591 gagttaacacggttttgccacctaaaaacgtaaactttggcaagtttacgagttaacactc-gatttgtggaaca 21199518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 31975686 - 31975751
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    ||||||||| |||||  |||||||| || ||||| ||||||||||| |||||||| || |||||||    
T  31975686 cgattttacaagaaatcgagtttacctcagagttaacacgattttggtacctaaacacataaactc 31975751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 259
Target Start/End: Complemental strand, 27148900 - 27148805
Alignment:
Q  163 gaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaacattgc 259  Q
    |||| |||| |||| ||||| || |||||||||||||||||||||||||||||||| | || ||| ||  ||||||||| |||||||||||||||||    
T  27148900 gaaattgaggttacctccgatttaacacgattttgatacctaaaaacgtaaactcgataaactttgcgagttaacactc-gatttgtggaacattgc 27148805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 48136922 - 48136988
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||| ||||| ||||||||| || ||||| ||||||||||| ||||||||||||||||||||||    
T  48136922 attttaccagaaactgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcggt 48136988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 43172221 - 43172152
Alignment:
Q  151 tcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||||| |||||  |||||||| |||||||| ||| |||||||||||||||||| |||||||||||    
T  43172221 tcgattttaccagaaatcgagtttacctccgagttaacatgattttgatacctaaaaatgtaaactcggt 43172152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 37972569 - 37972637
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| ||||| ||||||||  || ||||| ||||||||||| ||||||||||||||||||||||    
T  37972569 cgattttaccagaaactgagtttatctcagagttaacacgattttggtacctaaaaacgtaaactcggt 37972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 35313603 - 35313521
Alignment:
Q  172 tttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    ||||| |||||||| ||||| |||||  | |||||||||||||||||| | ||||||||| ||||||||| |||||||||||||    
T  35313603 tttacctccgagttaacacggttttgccatctaaaaacgtaaactcgggcgagtttacgtgttaacactc-gatttgtggaaca 35313521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 14732347 - 14732431
Alignment:
Q  170 agtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    ||||||| |||||||| ||||| |||||  ||||||||||||||||| |  | ||||||||| ||||||||| |||||||||||||    
T  14732347 agtttacctccgagttaacacgtttttgccacctaaaaacgtaaacttgagcgagtttacgtgttaacactc-gatttgtggaaca 14732431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 26201840 - 26201892
Alignment:
Q  168 tgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||||||||||||||||| |||||||||| ||||| |||||    
T  26201840 tgagtttacctccgagtttacacgattttggtacctaaaaatgtaaattcggt 26201892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 41827840 - 41827776
Alignment:
Q  153 gattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    |||||||| ||||| ||||||||| || ||||| ||||||||||  |||||||||||||||||||    
T  41827840 gattttaccagaaactgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactc 41827776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 12740866 - 12740815
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||| || ||||| ||||||||||| ||||||||||||||||||||||    
T  12740866 gagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcggt 12740815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 14741499 - 14741424
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| |||||||||||||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  14741499 aactttccgattttactagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 14741424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 11735224 - 11735289
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactc 217  Q
    ||||||||| |||||  |||||||| |||||||| |||||||||||  |||||||| |||||||||    
T  11735224 cgattttaccagaaatcgagtttacctccgagttaacacgattttgggacctaaaatcgtaaactc 11735289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 32884305 - 32884216
Alignment:
Q  132 tgttaactcggtcaa-cttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| ||||| | || ||||||||| |||||  |||||||| || ||||| || |||||||  ||||||||||||||||||||||    
T  32884305 tgttaactcagtcaaaccttccgattttaccagaaacagagtttacctcagagttaactcgatttttgtacctaaaaacgtaaactcggt 32884216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 33497144 - 33497193
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||| |||||||| ||||||||||||||| |||||| |||||||||    
T  33497144 gagtttacctccgagttgacacgattttgatacttaaaaatgtaaactcg 33497193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 16709485 - 16709433
Alignment:
Q  168 tgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| || |||||  |||||||||| ||||||||||||||||||||||    
T  16709485 tgagtttacctcagagttaccacgattttggtacctaaaaacgtaaactcggt 16709433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 17683721 - 17683669
Alignment:
Q  168 tgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| || |||||  |||||||||| ||||||||||||||||||||||    
T  17683721 tgagtttacctcagagttaccacgattttggtacctaaaaacgtaaactcggt 17683669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 29893501 - 29893417
Alignment:
Q  136 aactcggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| | ||| ||||||||| || ||||| ||||||||| || ||||| ||||||||||  ||| |||||| |||||||||||    
T  29893501 aactcgttaaacctttcgatttcaccagaaactgagtttacctcagagttaacacgatttttgtacttaaaaatgtaaactcggt 29893417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 21024115 - 21024025
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaacattgca 260  Q
    |||||||| | |||||| ||||| |||||  |||||||| ||||||||||| | | ||||||| ||||||||| |||||||| |||| ||||    
T  21024115 gagtttaccttcgagttaacacgtttttgtcacctaaaatcgtaaactcgggcgaatttacgtgttaacactc-gatttgtgaaacagtgca 21024025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 42043409 - 42043349
Alignment:
Q  178 tccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcg 242  Q
    |||||||||||||||||||| ||||||||||  ||||||||    |||||| |||||||||||||    
T  42043409 tccgagtttacacgattttgctacctaaaaatttaaactcg----agtttatgttttaacactcg 42043349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 28034542 - 28034608
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||| |||||  || |||||||| ||||| ||||||||||  ||| ||||||||||||||||||    
T  28034542 attttaccagaaaccgattttacatcagagttaacacgatttttgtacataaaaacgtaaactcggt 28034608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 37328420 - 37328354
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||| |||||  |||||||| |  ||||| ||||||||||  ||||||||||||||||||||    
T  37328420 cgattttaccagaaatcgagtttaccttagagttaacacgatttttgtacctaaaaacgtaaactcg 37328354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 44256447 - 44256513
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||| |||||  |||||||| || ||||| ||||||||||  || |||||||||||||||||    
T  44256447 cgattttaccagaaatcgagtttacctcagagttaacacgatttttgtatctaaaaacgtaaactcg 44256513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 8675841 - 8675776
Alignment:
Q  155 ttttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| |||||  |||||||| |  ||||| ||||||||||| ||||||||||||| ||||||||    
T  8675841 ttttaccagaaaccgagtttaccttagagttaacacgattttggtacctaaaaacgttaactcggt 8675776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 4639908 - 4639976
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  4639908 cgattttaccagaaatagagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 4639976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 29586007 - 29585959
Alignment:
Q  172 tttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  29586007 tttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 29585959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 33383151 - 33383119
Alignment:
Q  188 cacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||||| ||||||||||||||||||||||    
T  33383151 cacgattttggtacctaaaaacgtaaactcggt 33383119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 37392684 - 37392748
Alignment:
Q  178 tccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcg 242  Q
    |||||||||||| | |||||  |||||||||||||||||||| | | ||||||  ||||||||||    
T  37392684 tccgagtttacatgtttttgccacctaaaaacgtaaactcggacgaatttacgagttaacactcg 37392748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 39028580 - 39028532
Alignment:
Q  172 tttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||| || |||||||||| |||||  ||||||||||||||||||||||    
T  39028580 tttacctcagagtttacacaatttttgtacctaaaaacgtaaactcggt 39028532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 932 - 1007
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| ||||||||| |||||  |||||||| |||||||| ||||||||||| |||||||| |||||||||||||    
T  932 aactttccgattttaccagaaaccgagtttacctccgagttaacacgattttggtacctaaacacgtaaactcggt 1007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 24067172 - 24067105
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    ||||||||| ||||| |||||| || |||||||| ||||||||||| |||||||||||||||||||||    
T  24067172 cgattttaccagaaattgagttcacctccgagttgacacgattttggtacctaaaaacgtaaactcgg 24067105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 41394025 - 41393958
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaact 216  Q
    |||||||||||  ||||| ||||||||| ||||| || ||||||||||||||||||||||||||||||    
T  41394025 tttcgattttatcagaaactgagtttacctccgaattaacacgattttgatacctaaaaacgtaaact 41393958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 32498056 - 32497988
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||||||||||  |||||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  32498056 cgattttactagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 32497988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 1527956 - 1528042
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaacat 256  Q
    |||||||| |||||||| ||||| |||||  || |||||||||||| | || ||| |||||| |||||||||| ||||||||||||||    
T  1527956 gagtttacctccgagttaacacgtttttgccacttaaaaacgtaaaattggacaaatttacgatttaacactc-gatttgtggaacat 1528042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 28317099 - 28317208
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcgga 244  Q
    ||||||||||||| || | |||  |||||||| ||||||||| |||  |||||  ||||||||||||||| |||| | ||||||||  ||||||||| ||    
T  28317099 aacttttcgatttcaccaaaaatcgagtttacctccgagttttcacctttttgccacctaaaaacgtaaattcggacgagtttacgaattaacactc-ga 28317197  T
Q  245 tttgtggaaca 255  Q
    ||||| |||||    
T  28317198 tttgtagaaca 28317208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 6388153 - 6388222
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaa 214  Q
    |||||| ||||||||| | |||  |||||||| |||||||| ||||||||||| ||||||||||| ||||    
T  6388153 aactttccgattttaccataaacagagtttacctccgagttaacacgattttggtacctaaaaacataaa 6388222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 37131338 - 37131387
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||| |||||||| ||||||||||| |||||||||| |||||||||    
T  37131338 gagtttacctccgagttgacacgattttggtacctaaaaatgtaaactcg 37131387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 10295025 - 10295093
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| || ||||| |||||||| |  ||||||||||||||||||||||    
T  10295025 cgattttaccagaaaccgagtttacctcagagttaacacgattgttgtacctaaaaacgtaaactcggt 10295093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 27878669 - 27878729
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgta 212  Q
    ||||||||| |||||  || |||||||||||||| ||||||||||| |||||||| |||||    
T  27878669 cgattttaccagaaaccgaatttacatccgagttaacacgattttggtacctaaacacgta 27878729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 28018850 - 28018910
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgta 212  Q
    ||||||||| |||||  || |||||||||||||| ||||||||||| |||||||| |||||    
T  28018850 cgattttaccagaaaccgaatttacatccgagttaacacgattttggtacctaaacacgta 28018910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 43166359 - 43166430
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||| ||||||| ||||| | | ||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  43166359 tttcaattttaccagaaacttattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 43166430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 8029875 - 8029941
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||| |||||  |||||||  || ||||| ||||||||||| |||||||| |||||||||||    
T  8029875 cgattttaccagaaatcgagtttatctcagagttaacacgattttggtacctaaacacgtaaactcg 8029941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 9288182 - 9288248
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||| |||||  || ||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  9288182 attttaccagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 9288248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 42305292 - 42305358
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||| |||||  || ||||| || ||||| |||||||||| ||||||||||| |||||||||||    
T  42305292 attttaccagaaaccgattttacctcagagttaacacgatttttatacctaaaaaggtaaactcggt 42305358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 12522483 - 12522520
Alignment:
Q  179 ccgagtttacacgattttgatacctaaaaacgtaaact 216  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  12522483 ccgagttaacacgattttggtacctaaaaacgtaaact 12522520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 12522542 - 12522598
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaa 208  Q
    ||||||||| |||||  |||||||| || ||||| ||||||||||| ||||||||||    
T  12522542 cgattttaccagaaaccgagtttacctctgagttaacacgattttggtacctaaaaa 12522598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 17234780 - 17234716
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaact 216  Q
    ||||||||| |||||  |||||||| |||||||| | | ||||||| |||||||||||| |||||    
T  17234780 cgattttaccagaaatcgagtttacctccgagttgataggattttggtacctaaaaacgcaaact 17234716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 31625823 - 31625755
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||| |||||  |||||||| || ||||| |||| |||||  |||||||||| |||||||||||    
T  31625823 cgattttaccagaaaccgagtttacctcagagttaacacaatttttgtacctaaaaatgtaaactcggt 31625755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 43308196 - 43308260
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||| |||||  || |||| ||| ||||| ||||||||||| |||||||||||| |||||||    
T  43308196 attttaccagaaaccgattttatatcagagttaacacgattttggtacctaaaaacgcaaactcg 43308260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 38413506 - 38413591
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||||||||| |||||  |||||||||||||||||||| | ||||||||  ||||||||| ||||| |||||||    
T  38413506 gagtttacctccgagtttacacgtttttgccacctaaaaacgtaaactcggacgagtttacgagttaacactc-gatttatggaaca 38413591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 13833107 - 13833172
Alignment:
Q  153 gattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||||||||| ||||||||| || ||||| ||||||||||  ||||||||||||||||||||    
T  13833107 gattttactagaaattgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcg 13833172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 40829705 - 40829634
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||| ||||||| |||||  |||||||| |||||||| |||||||||||||||||||||| ||| |||||||    
T  40829705 tttctattttaccagaaaccgagtttacctccgagttaacacgattttgatacctaaaaatgtagactcggt 40829634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 242
Target Start/End: Complemental strand, 30850346 - 30850244
Alignment:
Q  140 cggtcaacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacac 239  Q
    |||||||||||  |||||||| | |||| || ||||| |||||||||| |||||||||  |||||||||||||||| | | | ||||||||||| || ||    
T  30850346 cggtcaactttatgattttaccaaaaaacgaatttacctccgagtttatacgattttggcacctaaaaacgtaaacgcaggcgagtttacgtttcaatac 30850247  T
Q  240 tcg 242  Q
    |||    
T  30850246 tcg 30850244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 13898525 - 13898442
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaa 253  Q
    |||||||| |||||||| ||||| |||||   ||||||||||||||||| | | ||||||||| ||||||||| |||||||||||    
T  13898525 gagtttacctccgagttaacacgtttttgccgcctaaaaacgtaaactcagacgagtttacgtgttaacactc-gatttgtggaa 13898442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 14039142 - 14039059
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaa 253  Q
    |||||||| |||||||| ||||| |||||   ||||||||||||||||| | | ||||||||| ||||||||| |||||||||||    
T  14039142 gagtttacctccgagttaacacgtttttgccgcctaaaaacgtaaactcagacgagtttacgtgttaacactc-gatttgtggaa 14039059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 25288678 - 25288610
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||||||||||  |||||||| || ||||| ||||||||||  |||||||||| |||||||||||    
T  25288678 cgattttactagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggt 25288610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 214945 - 215012
Alignment:
Q  153 gattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||| ||||| ||||||||| |  ||||| ||||||||||| |||||||||||||||| |||||    
T  214945 gattttaccagaaactgagtttaccttagagttaacacgattttggtacctaaaaacgtaaattcggt 215012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 12877773 - 12877662
Alignment:
Q  132 tgttaactcggtcaa-cttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacg 230  Q
    ||||||||||||||| |||| |||||| |  | |||  |||||||| |||||||| ||||| |||||  |||||||||||||||||||| | | ||||||    
T  12877773 tgttaactcggtcaaactttccgatttcatcaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcggacgaatttacg 12877674  T
Q  231 ttttaacactcg 242  Q
      ||||||||||    
T  12877673 agttaacactcg 12877662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 18899956 - 18900031
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||| |||||||||||||||  |||||||| |||||||| ||||| ||||   ||||||| |||||||||||||    
T  18899956 aactttccgattttactagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 18900031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 11153384 - 11153489
Alignment:
Q  151 tcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtg 250  Q
    |||||||||| |||||  |||||||| |||||||| |||||||||    ||||||||||||||| |||  | ||||||||  |||||||||  |||||||    
T  11153384 tcgattttaccagaaaccgagtttacctccgagttaacacgatttcagcacctaaaaacgtaaattcgtccgagtttacgagttaacactc-aatttgtg 11153482  T
Q  251 gaacatt 257  Q
    |||||||    
T  11153483 gaacatt 11153489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 15926444 - 15926378
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||| |||||  ||||| || |||||||| ||||||||||| |||| |||||||||||||||    
T  15926444 cgattttaccagaaatcgagttaacctccgagttgacacgattttggtaccaaaaaacgtaaactcg 15926378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 3991846 - 3991773
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||||||||| || | |||  |||||||| |||||||| ||||| |||||  |||||||||||||||||||    
T  3991846 aacttttcgatttcaccaaaaaccgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 3991773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 15224303 - 15224234
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaa 214  Q
    ||||||||||||| || |||||  |||||||| || ||||| ||||||||||| |||||||| |||||||    
T  15224303 aacttttcgatttcaccagaaatcgagtttacctctgagttaacacgattttggtacctaaacacgtaaa 15224234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 2308742 - 2308811
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaa 214  Q
    ||||||| |||||||| | |||  || ||||| |||||||| ||||||||||| ||| ||||||||||||    
T  2308742 aactttttgattttaccacaaaccgaatttacctccgagttaacacgattttggtacataaaaacgtaaa 2308811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 33262902 - 33262853
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    |||||||| | |||||||||||| |||||  |||||||||||||||||||    
T  33262902 gagtttaccttcgagtttacacgtttttgccacctaaaaacgtaaactcg 33262853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 1833743 - 1833807
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcg 218  Q
    ||||||| |||||  || ||||| ||| | || ||||||||||| ||||||||||||||||||||    
T  1833743 attttaccagaaatcgaatttacctccaaattgacacgattttgttacctaaaaacgtaaactcg 1833807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 10657925 - 10657877
Alignment:
Q  172 tttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  10657925 tttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 10657877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 33136131 - 33136063
Alignment:
Q  152 cgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||| ||| |||||  |||||||| || ||||| ||||||||||  ||||||||||| ||||||||||    
T  33136131 cgattataccagaaatcgagtttacctcagagttaacacgatttttgtacctaaaaacataaactcggt 33136063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 57752 - 57819
Alignment:
Q  153 gattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||||||||||  |||||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  57752 gattttactagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 57819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 1440 - 1331
Alignment:
Q  145 aacttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcgga 244  Q
    |||||| |||||| |||| |||  |||||||| ||| |||| ||| | |||||  |||||||||||||||||||||| ||||||||  ||||||||| ||    
T  1440 aactttccgatttcactaaaaaccgagtttacctccaagttaacatgtttttgccacctaaaaacgtaaactcggtcgagtttacgagttaacactc-ga 1342  T
Q  245 tttgtggaaca 255  Q
    |||||| ||||    
T  1341 tttgtgaaaca 1331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 25652 - 25736
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||| ||||| |||||  |||||||||||||||||| |   ||||||||  ||||||||| |||||||||||||    
T  25652 gagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcag-agagtttacgagttaacactc-gatttgtggaaca 25736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 39319 - 39390
Alignment:
Q  149 tttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    |||||||||||| |||||  ||||| || || | ||| ||||||||||| ||||||||||||||||||||||    
T  39319 tttcgattttaccagaaaccgagttgacctcagggttaacacgattttggtacctaaaaacgtaaactcggt 39390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 439 - 354
Alignment:
Q  169 gagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggtcaagtttacgttttaacactcggatttgtggaaca 255  Q
    |||||||| |||||||| ||||| |||||  || ||||||||||||||||  | ||||||||| ||||||||| |||||||| ||||    
T  439 gagtttacctccgagttaacacgtttttgccacataaaaacgtaaactcgaacgagtttacgtgttaacactc-gatttgtgaaaca 354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 219
Target Start/End: Complemental strand, 8943 - 8855
Alignment:
Q  132 tgttaactcggtcaa-cttttcgattttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcgg 219  Q
    ||||||||||| ||| | || ||||||||| |||||  |||||||| || ||||| ||||||||||| |||||||| | ||||||||||    
T  8943 tgttaactcggccaaaccttccgattttaccagaaatcgagtttacctcagagttaacacgattttggtacctaaacatgtaaactcgg 8855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1504 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 1379 - 1313
Alignment:
Q  154 attttactagaaaatgagtttacatccgagtttacacgattttgatacctaaaaacgtaaactcggt 220  Q
    ||||||| |||||  || ||||| || ||||| ||||||||||  ||||||||||||||||||||||    
T  1379 attttacaagaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggt 1313  T

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