View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_29 (Length: 288)
Name: NF6360_low_29
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 47938164 - 47938423
Alignment:
| Q |
16 |
cacacatagcagagcgagcagacaatttactacgttcagcttgcggacgaagaacaaaacatgttgaaccaaagacttttagagaggaataatcaggtat |
115 |
Q |
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| T |
47938164 |
cacacatagcagagcgagaagacaatttactacgttcaacttgcggacgaagaacaaaacaagttgaaccaaagactttcagagaggaataatcaggtat |
47938263 |
T |
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| Q |
116 |
agaggcatacaatttttcaaaaggagacaaacctgatataactgacgaagggattctattaatagcatgaacagcagtaagcactgcttcaccccaaaac |
215 |
Q |
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| T |
47938264 |
agaggcatacaatttttcaaaaggagacaaacctgatataactgacgaagggattctattaatagcatgaacagcggtaagcactgcttcaccccaaaac |
47938363 |
T |
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| Q |
216 |
acactaggaactgaagcagacaacaaaagggaacgggcggtttcaataatatgatgatgt |
275 |
Q |
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| T |
47938364 |
tcactaggaactgaagcagacaacaaaagggaacgagcagtttcaataatatgacgatgt |
47938423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 275
Target Start/End: Original strand, 47631646 - 47631906
Alignment:
| Q |
16 |
cacacatagcagagcgagcagacaatttactacgttcagcttgcggacgaa-gaacaaaacatgttgaaccaaagacttttagagaggaataatcaggta |
114 |
Q |
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| T |
47631646 |
cacacatagtagagcgagaagacaatttactacgttcaacttgcggacgaaagaacaaaacaagttgaaccaaagactttcagagaggaataatcaggta |
47631745 |
T |
|
| Q |
115 |
tagaggcatacaatttttcaaaaggagacaaacctgatataactgacgaagggattctattaatagcatgaacagcagtaagcactgcttcaccccaaaa |
214 |
Q |
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| T |
47631746 |
tagaggcatacaatttttcaaaaggagacaaacctgatataactgacgaagggattctattaatagcatgaacagaggtaagcactgcttcaccccaaaa |
47631845 |
T |
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| Q |
215 |
cacactaggaactgaagcagacaacaaaagggaacgggcggtttcaataatatgatgatgt |
275 |
Q |
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| T |
47631846 |
ctcactagaaaatgaagcagacaacaaaagggaacgagcagtttcaataatatgacgatgt |
47631906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 46820520 - 46820261
Alignment:
| Q |
16 |
cacacatagcagagcgagcagacaatttactacgttcagcttgcggacgaagaacaaaacatgttgaaccaaagacttttagagaggaataatcaggtat |
115 |
Q |
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||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
46820520 |
cacacatagtagagcgagaagacaatttactacgttcaacttgcggacgaagaacaaaacaagttgaaccaaagactttcagagaggaataatcaggtat |
46820421 |
T |
|
| Q |
116 |
agaggcatacaatttttcaaaaggagacaaacctgatataactgacgaagggattctattaatagcatgaacagcagtaagcactgcttcaccccaaaac |
215 |
Q |
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| T |
46820420 |
agaggcatacaatttttcaaaaggagacaaacctgatataactgacgaagggattctattaatagcatgaacagcggtaagcactgcttcaccccaaaac |
46820321 |
T |
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| Q |
216 |
acactaggaactgaagcagacaacaaaagggaacgggcggtttcaataatatgatgatgt |
275 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |
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| T |
46820320 |
tcactaggaactgaagcagacaacaaaagggaacgagcagtttcaataatatgacgatgt |
46820261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 10053331 - 10053463
Alignment:
| Q |
143 |
caaacctgatataactgacgaagggattctattaatagcatgaacagcagtaagcactgcttcaccccaaaacacactaggaactgaagcagacaacaaa |
242 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10053331 |
caaacctgatataactgacgaagggattatattaatagcatgaacaacggtaagcactgcttcaccccaaaactcactaggaactgaagcagacaacaaa |
10053430 |
T |
|
| Q |
243 |
agggaacgggcggtttcaataatatgatgatgt |
275 |
Q |
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|||||| | || ||||||| |||||| ||||| |
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| T |
10053431 |
agggaatgagcaatttcaatgatatgacgatgt |
10053463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 121 - 274
Target Start/End: Original strand, 9879420 - 9879573
Alignment:
| Q |
121 |
catacaatttttcaaaaggagacaaacctgatataactgacgaagggattctattaatagcatgaacagcagtaagcactgcttcaccccaaaacacact |
220 |
Q |
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|||||||||||||||| |||||||||||||| | || || || || |||| | ||||||||||||| ||| || | ||||| ||||||| | |||| |
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| T |
9879420 |
catacaatttttcaaagggagacaaacctgaagtgacggatgatggaattcgagtaatagcatgaacgttagtgagaattgctttgccccaaatctcact |
9879519 |
T |
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| Q |
221 |
aggaactgaagcagacaacaaaagggaacgggcggtttcaataatatgatgatg |
274 |
Q |
| |
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||||| ||||||||||||||||||||||| || ||||||| ||||||| |||| |
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| T |
9879520 |
tggaacagaagcagacaacaaaagggaacgagctgtttcaacaatatgacgatg |
9879573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 275
Target Start/End: Original strand, 4459896 - 4460050
Alignment:
| Q |
121 |
catacaatttttcaaaaggagacaaacctgatataactgacgaagggattctattaatagcatgaacagcagtaagcactgcttcaccccaaaacacact |
220 |
Q |
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|||||||||||||||| |||||||||||| | || || ||||| |||| ||||||| |||||||| |||| | | |||||||||||||||| |||| |
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| T |
4459896 |
catacaatttttcaaagggagacaaacctcgagtgacagatgaaggaattcgattaataacatgaacaacagtgataattgcttcaccccaaaactcact |
4459995 |
T |
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| Q |
221 |
aggaactgaagcagacaacaaaagggaacgggcggtttcaataatatgatgatgt |
275 |
Q |
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||| | ||||||| |||||||||||||| | ||||||| ||||||| ||||| |
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| T |
4459996 |
tggagcagaagcaggcaacaaaagggaacatgttgtttcaacaatatgacgatgt |
4460050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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