View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_30 (Length: 285)
Name: NF6360_low_30
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 38673253 - 38673057
Alignment:
| Q |
19 |
cttctaataaataatcaatttcgtcactaaacttccactctatcatcaatttagactctaagctattataatcaactaaaatgatcataagctcattcaa |
118 |
Q |
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| T |
38673253 |
cttctaataaacaatcaatttcgtcactaaacttccactctatcatcaatttagactctaagctactataatcaactaaaatgatcataagctcattcaa |
38673154 |
T |
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| Q |
119 |
aaatgataaatgggcacaattttttaaacacaatacagacaccactatataattacagtgtatttcccatttgtttacactgttactttatactcta |
215 |
Q |
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| T |
38673153 |
aaatgataaatgaacacaattttttaaacacaatacagacaccactatataattataatgtatttcccatttgtttacactgttactttatactcta |
38673057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 11916649 - 11916552
Alignment:
| Q |
119 |
aaatgataaatgggcacaattttttaaacacaatacagacaccactatataattacagtgtatttccc--atttgtttacactgttactttatactct |
214 |
Q |
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| T |
11916649 |
aaatgataaattgacacatttttttagacacaatacagacaccaccgtataattataaggtatttcccttttttttttacactgttactttatactct |
11916552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 15888758 - 15888857
Alignment:
| Q |
116 |
caaaaatgataaatgggcacaattttttaaacacaatacagacaccactatataattacagtgtatttcccatttgtttacactgttactttatactcta |
215 |
Q |
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| T |
15888758 |
caaaaatgataaatgaacacaattttttaaacacaatacagacaccactatataattatacggtattttccatttgtttacacttttactttatactcta |
15888857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 43187124 - 43187215
Alignment:
| Q |
119 |
aaatgataaatgggcacaattttttaaacacaatacagacaccactatataattacagtgtatttcccatttgtttacactgttactttata |
210 |
Q |
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||||||||||||| ||||||||||||| || ||||||||||||||| |||||||| | | ||||| ||||| ||||||||||||||||||| |
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| T |
43187124 |
aaatgataaatggacacaattttttaagcataatacagacaccactgtataattatacggaatttctcatttctttacactgttactttata |
43187215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 9372965 - 9372872
Alignment:
| Q |
119 |
aaatgataaatgggcacaattttttaaacacaatacagacaccactatataattacagtgtatttcccatttgtttacactgttactttatactct |
214 |
Q |
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| T |
9372965 |
aaatgataaatggacaca-tattttagacacaatacagacaccaccgtataattatacggtatttccctttt-tttacactgttactttatactct |
9372872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 41764240 - 41764198
Alignment:
| Q |
120 |
aatgataaatgggcacaattttttaaacacaatacagacacca |
162 |
Q |
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| T |
41764240 |
aatgataaatggacacaaattttcaaacacaatacagacacca |
41764198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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