View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_40 (Length: 251)
Name: NF6360_low_40
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_40 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0262 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 13458324 - 13458079
Alignment:
| Q |
9 |
agcagagactcatcactgtgaacatttttgttaatctacaaaactaataaggttttcgcaacacttccaagaattcaagttgtgcaatgaacatcagacc |
108 |
Q |
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| T |
13458324 |
agcagagactcatcactgtgaacatttttgttaatctacaaaactaataaggttttcgcaacacttccaagaagtcaagttgtgcaatgaacatcagacc |
13458225 |
T |
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| Q |
109 |
atactctcaatctttcatttaggtgatcatcgatctcatgtgatagaacaaacacacaatactcagaatgcacccgagccggatgattgcgatagacaat |
208 |
Q |
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| T |
13458224 |
atactctcaatctttcatttaggtaatcatcgatctcatgtgatagaacaaacacacaatactcagaatgcacccgagccggatgattgcgatggacaat |
13458125 |
T |
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| Q |
209 |
caagtctacaccatac---tgagctcctgacctaccagtttttcat |
251 |
Q |
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| T |
13458124 |
caagtctacaccatactgatgagctcctgacctaccagtttttcat |
13458079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 36663201 - 36663428
Alignment:
| Q |
11 |
cagagactcatcactgtgaacatttttgttaatctacaaaactaataaggttttcgcaacacttccaagaattcaagttgtgcaatgaacatcagaccat |
110 |
Q |
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| T |
36663201 |
cagagactcatcattgttaccatttttgttaacgtacaaaactaataaggtttttgcaacacctccaagaagtcgagttgtgcaatgaacatcagaccat |
36663300 |
T |
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| Q |
111 |
actctcaatctttcatttaggtgatcatcgatctcatgtgatagaacaaacacacaatactcagaatgcacccgagccggatgattgcgatagacaatca |
210 |
Q |
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| T |
36663301 |
actctcaatcttccatttagatcaccatccttgtcatgagatagaacaagtacaccatactcagaatgcacccgagcaggatgatggcgatagacaatca |
36663400 |
T |
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| Q |
211 |
agtctacaccatactgagctcctgacct |
238 |
Q |
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| T |
36663401 |
agtctacaccatactgagcccctgacct |
36663428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 6500 - 6717
Alignment:
| Q |
11 |
cagagactcatcactgtgaacatttttgttaatctacaaaactaataaggttttcgcaacacttccaagaattcaagttgtgcaatgaacatcagaccat |
110 |
Q |
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| T |
6500 |
cagagacttatcacagtcaccatttttgttaacgtacaaaactagtaaggtttttgcaacacttccaagaagttgagttgtgcaaagaacatcagatcat |
6599 |
T |
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| Q |
111 |
actctcaatctttcatttaggtgatcatcgatctcatgtgatagaacaaacacacaatactcagaatgcacccgagccggatgattgcgatagacaatca |
210 |
Q |
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| T |
6600 |
actctcaatcttccatttaattcaccatcattgtcatgtgatagaacaagtacaccatactcagaatgcacccaagccggatgatggcgataaacaataa |
6699 |
T |
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| Q |
211 |
agtctacaccatactgag |
228 |
Q |
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| T |
6700 |
agtctacaccatactgag |
6717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 10083 - 10016
Alignment:
| Q |
11 |
cagagactcatcactgtgaacatttttgttaatctacaaaactaataaggttttcgcaacacttccaa |
78 |
Q |
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| T |
10083 |
cagagacttatcactgtcaccatttttgttaacgtacaaaactagtaaggtttttgcaacacttccaa |
10016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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