View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_43 (Length: 244)
Name: NF6360_low_43
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 39070665 - 39070442
Alignment:
| Q |
1 |
taaagctcctcccactactcatatatgnnnnnnnngtaccgaccactcatgctaaaaatcgggaaaaatattgttggactaagagaccactcaatttann |
100 |
Q |
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|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39070665 |
taaagctcctcccactactcatatgtgttttttttgtaccaaccactcatgctaaaaatcgggaaaaatattgttggactaagagaccactctattt--t |
39070568 |
T |
|
| Q |
101 |
nnnnnngaaggaagagaccactctattattaactcttttaactgcatgctttcaattttaatgccaattttttattgttacgttgttatggctaatttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39070567 |
ttttttgaaggaagagaccactctattattaactcttttaattgcatgctttcaattttaatgccaattttttattgttacgttgttatggctaatttaa |
39070468 |
T |
|
| Q |
201 |
attatatggctgtaagaactcgaact |
226 |
Q |
| |
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||| ||||||| |||||||||||||| |
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|
| T |
39070467 |
attctatggctctaagaactcgaact |
39070442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43504958 - 43504737
Alignment:
| Q |
1 |
taaagctcctcccactactcatatatgnnnnnnnngtaccgaccactcatgctaaaaatcgggaaaaatattgttggactaagagaccactcaatttann |
100 |
Q |
| |
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|||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
43504958 |
taaagctcctcccactactcatatgtgttttttt-gtactgaccactcatgctaaaaatcgggaaaaatattgttagactaagagaccactttattt--- |
43504863 |
T |
|
| Q |
101 |
nnnnnngaaggaagagaccactctattattaactcttttaactgcatgctttcaattttaatgccaatt-ttttattgttacgttgttatggctaattta |
199 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43504862 |
-tttttgaaggaagagaccactctattattaactcttttaattgcatgctttcaattttaatgccaatttttttattgttacgttgttatggctaattta |
43504764 |
T |
|
| Q |
200 |
aattatatggctgtaagaactcgaact |
226 |
Q |
| |
|
|||| ||||||| |||||||||||||| |
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| T |
43504763 |
aattctatggctctaagaactcgaact |
43504737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 349079 - 349185
Alignment:
| Q |
112 |
aagagaccactctattattaactcttttaactgcatgctttcaattttaatgccaattttttattgttacgttgttatggctaatttaaattatatggct |
211 |
Q |
| |
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|||| |||||||||||||||||| |||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
349079 |
aagaaaccactctattattaactattttaattgtatgctttcaattttaatgccaatttttta--------ttgttatggctaatttaaattctatggct |
349170 |
T |
|
| Q |
212 |
gtaagaactcgaact |
226 |
Q |
| |
|
||||||||| |||| |
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| T |
349171 |
ctaagaactccaact |
349185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 349034 - 349090
Alignment:
| Q |
36 |
gtaccgaccactcatgctaaaaatcgggaaaaatattgttggactaagagaccactc |
92 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| |
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| T |
349034 |
gtaccgaccactcatgctaaaaatcgggataaatattgttagactaagaaaccactc |
349090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 10172939 - 10172849
Alignment:
| Q |
119 |
cactctattattaactcttttaactgcatgctttcaattttaatgccaat-tttttattgttacgttgttatggctaatttaaattatatg |
208 |
Q |
| |
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|||| |||| |||||||||||| |||| ||||||| ||| ||||| | |||||||||||| ||||||||||| |||||||||| |||| |
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|
| T |
10172939 |
cactatatttttaactcttttacttgcacactttcaaccttattgccattctttttattgttatgttgttatggccaatttaaattctatg |
10172849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 32561016 - 32561116
Alignment:
| Q |
120 |
actctattattaactcttttaactgcatgctttcaattttaatgccaa---ttttttattgttacgttgttatggctaatttaaattatatggctgtaag |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||| |||||||||||| ||||||||| |||| |||||| |
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| T |
32561016 |
actctattattaactcttttaattgcatgctttcaa-tctaatgccaatttttttttattgttatgttgttatggctgatttaaattctatgaatgtaag |
32561114 |
T |
|
| Q |
217 |
aa |
218 |
Q |
| |
|
|| |
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|
| T |
32561115 |
aa |
32561116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 24075789 - 24075858
Alignment:
| Q |
149 |
ctttcaattttaatgccaattttttattgttacgttgttatggctaatttaaattatatggctgtaagaa |
218 |
Q |
| |
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|||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||| || |||||| |
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| T |
24075789 |
ctttcaatcttaatgccaaatttttattgttaggttgttatggctaatttaaattctatgactctaagaa |
24075858 |
T |
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