View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6360_low_48 (Length: 202)

Name: NF6360_low_48
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6360_low_48
NF6360_low_48
[»] chr3 (2 HSPs)
chr3 (21-177)||(4149566-4149722)
chr3 (21-177)||(4165338-4165494)
[»] chr6 (4 HSPs)
chr6 (21-123)||(7115543-7115645)
chr6 (21-123)||(7120615-7120717)
chr6 (21-123)||(7124019-7124121)
chr6 (31-122)||(8656649-8656740)
[»] chr7 (1 HSPs)
chr7 (31-122)||(32413613-32413704)
[»] chr5 (2 HSPs)
chr5 (75-121)||(19658349-19658395)
chr5 (75-121)||(19675188-19675234)
[»] scaffold0896 (2 HSPs)
scaffold0896 (58-123)||(2256-2321)
scaffold0896 (58-122)||(1473-1537)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 4149566 - 4149722
Alignment:
Q  21 gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga 120  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  4149566 gatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatggaagaatctctgga 4149665  T
Q  121 agtatattcctgttctttcaataagttgttgccacttcgagactcggaagggtttca 177  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  4149666 agtatattcctgttctttcaataagttcttgccacttcgagactcggatgggtttca 4149722  T

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Target: chr3; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 4165338 - 4165494
Alignment:
Q  21 gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga 120  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  4165338 gatttaccgaattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatggaagaatctctgga 4165437  T
Q  121 agtatattcctgttctttcaataagttgttgccacttcgagactcggaagggtttca 177  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  4165438 agtatattcctgttctttcaataagttcttgccacttcgagactcggatgggtttca 4165494  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 7115645 - 7115543
Alignment:
Q  21 gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga 120  Q
    ||||||||  ||||||| ||||||| |||||| ||  |||||||||||||| | || |||||||| |||||| |||||   |||||||||||||||||||    
T  7115645 gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga 7115546  T
Q  121 agt 123  Q
    |||    
T  7115545 agt 7115543  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 7120717 - 7120615
Alignment:
Q  21 gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga 120  Q
    ||||||||  ||||||| ||||||| |||||| ||  |||||||||||||| | || |||||||| |||||| |||||   |||||||||||||||||||    
T  7120717 gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga 7120618  T
Q  121 agt 123  Q
    |||    
T  7120617 agt 7120615  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 7124121 - 7124019
Alignment:
Q  21 gatttaccgaattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctgga 120  Q
    ||||||||  ||||||| ||||||| |||||| ||  |||||||||||||| | || |||||||| |||||| |||||   |||||||||||||||||||    
T  7124121 gatttacctgattgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctgga 7124022  T
Q  121 agt 123  Q
    |||    
T  7124021 agt 7124019  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 8656740 - 8656649
Alignment:
Q  31 attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag 122  Q
    ||||||| ||||||| |||||| ||  |||||||||||||| | || |||||||| |||||| || ||   |||||||||||||||||||||    
T  8656740 attgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag 8656649  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 32413613 - 32413704
Alignment:
Q  31 attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag 122  Q
    ||||||| ||||||| |||||| ||   ||||||||||||| | ||||||||||| ||  || ||||| | |||||||||||||||||||||    
T  32413613 attgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaag 32413704  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 19658395 - 19658349
Alignment:
Q  75 gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa 121  Q
    ||||||||||| |||||| ||||| ||||||||| ||||||||||||    
T  19658395 gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa 19658349  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 19675234 - 19675188
Alignment:
Q  75 gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa 121  Q
    ||||||||||| |||||| ||||| ||||||||| ||||||||||||    
T  19675234 gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa 19675188  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 2256 - 2321
Alignment:
Q  58 ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagt 123  Q
    |||||||||||||| | || |||||||| |||||| || ||   ||||||||||||||||||||||    
T  2256 ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagt 2321  T

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Target: scaffold0896; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 1473 - 1537
Alignment:
Q  58 ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag 122  Q
    |||||||||||||| | || |||||||| |||||| || ||   |||||||||||||||||||||    
T  1473 ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag 1537  T

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