View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_6 (Length: 637)
Name: NF6360_low_6
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 49 - 381
Target Start/End: Original strand, 20520841 - 20521173
Alignment:
| Q |
49 |
ctaaaaccctaagcggctatgcctttcctctctatctccctctgtatttaaacccattagccaccattttttccctcaagactaacctctcacacttaaa |
148 |
Q |
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| T |
20520841 |
ctaaaaccctaagcggctatgcctttcctctctatctccctctgtatttaaacccattagccaccatcatttccctcaagactgaccccgcacactaaaa |
20520940 |
T |
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| Q |
149 |
aatggcctctagagcgttgctcaaaatcaagataaaccaaaaccttcattttcgttttctctccaaaactagttcaattctaacccgatccgttgtcccg |
248 |
Q |
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| T |
20520941 |
aatggcctccagagcgttgctcaaaatcaagataaaccaaaaccttccttttcgttttctctccaaaactaattcaattctaacccgatccgttgtcccg |
20521040 |
T |
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| Q |
249 |
ttagcacaacccgaagcctcgaaactctccctcaataactatttttcgcttctgggcggcgtgacctatagcctattttctagacaaatgggtactagta |
348 |
Q |
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| T |
20521041 |
ttagcacagcccgaagcctcgaaactctccctcaataacaatttttcgcttctgggcggcgtgacctatagcctatttgctagacaaatgggtactagta |
20521140 |
T |
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| Q |
349 |
agtctccatcaacgtcacgtggtaggcatcctt |
381 |
Q |
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| T |
20521141 |
agtctccatcaacgtcacgtggtaggcatcctt |
20521173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 507 - 625
Target Start/End: Original strand, 20521290 - 20521408
Alignment:
| Q |
507 |
ttttcttctcggaaataattacgatatcttgttccgtttgaatttgcgatgtatggatcattcatgtttaataaatttactgtttgtttgtctctttatt |
606 |
Q |
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| T |
20521290 |
ttttcttctaggaaataattacgatatcttgttccatttgaatttgcgatgtatggatcattcatgtttaataaatttactgtttgtttgtctctttgtt |
20521389 |
T |
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| Q |
607 |
acaaatcttgactgatgat |
625 |
Q |
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| T |
20521390 |
acaaatcttgactgttgat |
20521408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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