View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6360_low_8 (Length: 472)
Name: NF6360_low_8
Description: NF6360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6360_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 51805686 - 51806133
Alignment:
| Q |
18 |
caatgagtgttgttatatttgatatggatggtggaatttgaccatgcaacatgcatgttgataaaatcatggatttaagacttttcaatcttacaaagct |
117 |
Q |
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| T |
51805686 |
caatgagtgttgttatatttgatatggatggtggaatttgaccatgcaacatgcatgttgataaaatcatggatttaagacttctcaatcttacaaagct |
51805785 |
T |
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| Q |
118 |
ttttggtaattcccaaagattgagtttactgttttcgttgaagttgagaatttcaagattggtgaggttgaaaacagacatgggaaaatcgccggtgaag |
217 |
Q |
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| T |
51805786 |
ttttggtaattcccaaagattgagtttactgttttcgttgaagttgagaatttcaagattggtgaggttgaaaacagacatgggaaaatcgccggtgaag |
51805885 |
T |
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| Q |
218 |
gagttgtatgataagtcgaggactctgagatattttaaagacgagaaatcaggaagtgttcctgacaggtgcatcttgttcatgttgagttgttctaagt |
317 |
Q |
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| T |
51805886 |
gagttgtatgataagtcgaggactctgagatattttaaagacgagaaatcaggaagtgttcctgacaggtgcatcttgttcatgttgagtagttctaagt |
51805985 |
T |
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| Q |
318 |
gagaacagttgattatgctgtttgttgggaacttgaattttgtattaccgaggtttaggacacgtaaatttggaaggtaagagcaaatatttgatgggaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51805986 |
gagaacagttgattatgctgtttgttgggaacttgaattttgtattaccgaggtttaggacacgtaaatttggaaggtaagagcaaatatttgacgggaa |
51806085 |
T |
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| Q |
418 |
gtttccggaaagtgatgaccaacctgaaaaatcaagactgatgatgtc |
465 |
Q |
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| T |
51806086 |
gtttccggaaagtgatgaccaacctgaaaaatcaagacttatgatgtc |
51806133 |
T |
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