View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6361_high_3 (Length: 428)

Name: NF6361_high_3
Description: NF6361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6361_high_3
NF6361_high_3
[»] chr6 (5 HSPs)
chr6 (121-408)||(20023818-20024105)
chr6 (121-410)||(18764384-18764676)
chr6 (337-410)||(19379050-19379123)
chr6 (371-410)||(21391542-21391581)
chr6 (337-379)||(14601781-14601823)
[»] scaffold0039 (1 HSPs)
scaffold0039 (337-410)||(80624-80697)
[»] chr8 (1 HSPs)
chr8 (337-410)||(41985514-41985587)
[»] chr5 (1 HSPs)
chr5 (233-281)||(21113277-21113326)
[»] chr3 (2 HSPs)
chr3 (233-281)||(23218689-23218738)
chr3 (230-281)||(46124595-46124647)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 121 - 408
Target Start/End: Original strand, 20023818 - 20024105
Alignment:
Q  121 aatgttatactcacaatgcatagaaatttatctcatacaattatatccaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20023818 aatgttatactcacaatgcatagaaatttatctcatacaattatattcaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa 20023917  T
Q  221 caaggaatgaatagtgagagtgatatgttcattgaaatgatcatgaggtcttataattatttgggaaatgataagcagtgccctcgaattcgattaatga 320  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||    
T  20023918 caaggaatgaatagtgcgagtgatatgttcattgaaatgatcatgaggtcttataattatttgggaaatgataagcagtgcccccgaattcaattaaaga 20024017  T
Q  321 taacatgaaggggattaggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaa 408  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20024018 taatatgaagaggattaggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaa 20024105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 121 - 410
Target Start/End: Original strand, 18764384 - 18764676
Alignment:
Q  121 aatgttatactcacaatgcatagaaatttatctcatacaattatatccaatttcaaatatatcttcaaattttaataagtttaggcatgctttaaatgaa 220  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  18764384 aatgttatactcacaatgcatagaaatttatctcatataattatatccaatttcaaatatatcttcaaattttaaaaagtttaggcatgctttaaatgat 18764483  T
Q  221 caaggaatgaatagtgagagtg--atatgttcattgaaatgatcatgaggtcttataattatttgggaaatgataagcagtgccctcgaattc-gattaa 317  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||  | | ||  ||||| | ||||||    
T  18764484 caaggaatcaatagtgagagtgatatatgttcattgaaatgatcatgaggtcttataattatttggaaaatgataacgattacctccgaatactgattaa 18764583  T
Q  318 tgataacatgaaggggattaggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaatt 410  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18764584 tgataacataaaggggattaggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgataaaaatt 18764676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 19379050 - 19379123
Alignment:
Q  337 aggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaatt 410  Q
    ||||||||||||||||||| |||| |||||| |  |||||||||||||||||||||||||| ||||| ||||||    
T  19379050 aggttgaaattgtggatctattaataattttttgaatattccagtttcaatttcacggcttaatgatggaaatt 19379123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 21391542 - 21391581
Alignment:
Q  371 catattccagtttcaatttcacggcttcatgatagaaatt 410  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  21391542 catattccagtttcaatttcacggcttcaggatagaaatt 21391581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 379
Target Start/End: Original strand, 14601781 - 14601823
Alignment:
Q  337 aggttgaaattgtggatctcttaagaattttcttcatattcca 379  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  14601781 aggttgaaattgtggatctcttatgaattttcttcaaattcca 14601823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 80624 - 80697
Alignment:
Q  337 aggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaatt 410  Q
    ||||||||||||||||||| |||| |||||| |  |||||||||||||||||||||||||| ||||| ||||||    
T  80624 aggttgaaattgtggatctattaataattttttgaatattccagtttcaatttcacggcttaatgatggaaatt 80697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 410
Target Start/End: Original strand, 41985514 - 41985587
Alignment:
Q  337 aggttgaaattgtggatctcttaagaattttcttcatattccagtttcaatttcacggcttcatgatagaaatt 410  Q
    ||||||||||||||||||| |||| |||||| |  |||||||||||||||||||||||||| ||||| ||||||    
T  41985514 aggttgaaattgtggatctattaataattttttgaatattccagtttcaatttcacggcttaatgatggaaatt 41985587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 21113326 - 21113277
Alignment:
Q  233 agtgagagtgatatgttcattgaaatgatcat-gaggtcttataattatt 281  Q
    |||||| |||| |||||||||||||||||||| |||||| ||||||||||    
T  21113326 agtgagtgtgagatgttcattgaaatgatcatcgaggtcctataattatt 21113277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 23218738 - 23218689
Alignment:
Q  233 agtgagagtgatatgttcattgaaatgatcat-gaggtcttataattatt 281  Q
    ||||||||||| |||| |||| |||||||||| |||||||||||||||||    
T  23218738 agtgagagtgagatgtccattcaaatgatcatcgaggtcttataattatt 23218689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 46124647 - 46124595
Alignment:
Q  230 aatagtgagagtgatatgttcattgaaatgatcat-gaggtcttataattatt 281  Q
    ||||||||| |||| ||||||||  |||||||||| |||||||||||||||||    
T  46124647 aatagtgagtgtgagatgttcatcaaaatgatcatcgaggtcttataattatt 46124595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University