View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6361_low_1 (Length: 601)
Name: NF6361_low_1
Description: NF6361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6361_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 10 - 591
Target Start/End: Complemental strand, 41271722 - 41271141
Alignment:
| Q |
10 |
catcatcatcaaccccatcgtttgtcctggtcgacacaaatccagcaccctctggactaagatcatttgttgccacaactgattgctctggactattgga |
109 |
Q |
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| T |
41271722 |
catcatcatcaaccccatcgtttgtcctggtcgacacaaatccagcaccctctggactaagatcatttgttgccacaactgattgctctggactattgga |
41271623 |
T |
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| Q |
110 |
tgctttgtctacaattcaaaaatcagaagaaaaagaaagccaaattattttctttgaaataagtaatattaaaatggaggcaacgagaaacatctagccg |
209 |
Q |
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| T |
41271622 |
tgctttgtctacaattcaaaaatcagaagaaaaagaaagccaaattattttctttgaaataagtaatattaaaatggaggcaacgagaaacatctagccg |
41271523 |
T |
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| Q |
210 |
gtattaccatctcggacagccaaagaagatgccctattatcggatctctctccttgtgtagacataacagaaccagcagagtatcggttgcttggctgag |
309 |
Q |
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| T |
41271522 |
gtattaccatctcggacagccaaagaagatgccctattatcggatctctctccttgtgtagacataacagaaccagcagagtatcggttgcttggctgag |
41271423 |
T |
|
| Q |
310 |
gtttaggatgatcatgtgttcccttatatattatctcagtgatttgaccatcatgagagcgttcaaaaagttttttcacttcacagttaggatgcgtaca |
409 |
Q |
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| T |
41271422 |
gtttaggatgatcatgtgttcccttatatattatctcagtgatttgaccatcatgagagcgttcaaaaagttttttcacttcacagttaggatgcgtaca |
41271323 |
T |
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| Q |
410 |
tttgtaatagctgcgcggaaactcactccctttaacatgtttttgcccatactttcgccaattgtatccatcatttgatgattgaggcccattagcagtg |
509 |
Q |
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| T |
41271322 |
tttgtaatagctgcgcggaaactcactccctttaacatgtttttgcccatactttcgccaattgtatccatcatttgatgattgaggcccattagcagtg |
41271223 |
T |
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| Q |
510 |
ttgcctttgtggttaggttcatccgaattgacattgacgggagcgctggcgccgcaactaaccatatgcacaggtgatgatg |
591 |
Q |
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| T |
41271222 |
ctgcctttgtggttaggttcatccgaattgacattgacgggagcgctagcgccggaactaaccatatgcacaggtgatgatg |
41271141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 299 - 483
Target Start/End: Complemental strand, 22294516 - 22294332
Alignment:
| Q |
299 |
gcttggctgaggtttaggatgatcatgtgttcccttatatattatctcagtgatttgaccatcatgagagcgttcaaaaagttttttcacttcacagtta |
398 |
Q |
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|||||| ||||||||||||||||||||||||||||| || | ||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||||| |
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| T |
22294516 |
gcttggttgaggtttaggatgatcatgtgttcccttgtaaactatctcagtaatttggccgtcatgagagcgttcgaagagtttcttcacttcacagtta |
22294417 |
T |
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| Q |
399 |
ggatgcgtacatttgtaatagctgcgcggaaactcactccctttaacatgtttttgcccatactttcgccaattgtatccatcat |
483 |
Q |
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| T |
22294416 |
ggatgtgtgcatttgtaataactacgtggaaattcacatcctttaacaagcttctgcccatattttcgccaattgtatccatcat |
22294332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 488
Target Start/End: Original strand, 26967079 - 26967135
Alignment:
| Q |
432 |
tcactccctttaacatgtttttgcccatactttcgccaattgtatccatcatttgat |
488 |
Q |
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| T |
26967079 |
tcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctgat |
26967135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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