View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6361_low_4 (Length: 340)
Name: NF6361_low_4
Description: NF6361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6361_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 6000239 - 6000445
Alignment:
| Q |
1 |
cgtaagagagagcgtacccaacaaatggagatggatggtgttgctccgaggcgttggggtggtgctagagaacgccgtggtatattgtaatacaagttaa |
100 |
Q |
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| T |
6000239 |
cgtaggagagagcgtacccaacaaatggaggtggatggtgttgctccgaggcgtcggggtggtgctagagaatgccatggtatattgtaatacaagttaa |
6000338 |
T |
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| Q |
101 |
ttacttaacaagtgacacatatctatagatctagaaatagatgagaataaattgaatgactgattttataaccatgtttagagatcagtcgtctatgtat |
200 |
Q |
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| T |
6000339 |
ttacttaaaaagtgacacatatctatagatctagaaatagatgagaataaattgagtgactgattttataaccatgtttagagatcagttgtctatgtat |
6000438 |
T |
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| Q |
201 |
gttttga |
207 |
Q |
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| T |
6000439 |
gttttga |
6000445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 206 - 325
Target Start/End: Original strand, 6000475 - 6000594
Alignment:
| Q |
206 |
gattacgcagtgatacttaattggtatgggagaattctttattctttctatacgtataacgatattgctatagaatctagtcttcaatgacacaaccttt |
305 |
Q |
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| T |
6000475 |
gattacgctgtgatacttaattggtatgggagaattcttttttctttctatacgaataacgatattgctatagaatctagtcttcaatgacacaaccttt |
6000574 |
T |
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| Q |
306 |
gcgccaatttgtcgcctatg |
325 |
Q |
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| T |
6000575 |
gcgccaatttgtcgcctatg |
6000594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 30740867 - 30740935
Alignment:
| Q |
6 |
gagagagcgtacccaacaaatggagatggatggtgttgctccgaggcgttggggtggtgctagagaacg |
74 |
Q |
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| T |
30740867 |
gagagagcgtacccaatggatggaggagggtggtgttgttccgaggcgtcagggtggtgccagagaacg |
30740935 |
T |
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