View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6361_low_5 (Length: 238)
Name: NF6361_low_5
Description: NF6361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6361_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 84 - 222
Target Start/End: Original strand, 18218765 - 18218903
Alignment:
| Q |
84 |
gtatgcagcaggacttagcagcattactcttggccaaaaggagcttcattaaggttaataaatgaaccattcttggtgatggaggtagtgattgtggttt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18218765 |
gtatgcagcaggacttagcagcattactcttggccaaaaggagcttcattaaggttaataaatgaaccattcttggtgatggaggtagtgattgtggttt |
18218864 |
T |
|
| Q |
184 |
ttgtggtctctactggaggagaaagatgaggggaaaagg |
222 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18218865 |
ttgtggtctctagtggaggagaaagatgaggggaaaagg |
18218903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18218682 - 18218738
Alignment:
| Q |
1 |
aagttggctcaatctactattaccaacagagtctcaaaatgatgtggcttctttcaa |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18218682 |
aagttggctcaatctactattaccaacagagtctcaaaatgatgtggcttctttcaa |
18218738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 43010850 - 43010915
Alignment:
| Q |
157 |
tggtgatggaggtagtgattgtggtttttgtggtctctactggaggagaaagatgaggggaaaagg |
222 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
43010850 |
tggtgatggtggtagtgattggggtttttgtggtctctagtggaggagaaagataagtggaaaagg |
43010915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43010735 - 43010775
Alignment:
| Q |
1 |
aagttggctcaatctactattaccaacagagtctcaaaatg |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43010735 |
aagttggctcaatctactattaccaacagagtctcaaaatg |
43010775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University