View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6362_high_3 (Length: 388)
Name: NF6362_high_3
Description: NF6362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6362_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 170 - 374
Target Start/End: Complemental strand, 48091611 - 48091407
Alignment:
| Q |
170 |
aaatagaaatgaatgattatcttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataa |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091611 |
aaatagaaatgaatgattatcttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataa |
48091512 |
T |
|
| Q |
270 |
ggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagcacgttgtgccactgtgc |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091511 |
ggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagcacgttgtgccactgtgc |
48091412 |
T |
|
| Q |
370 |
ctttg |
374 |
Q |
| |
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||||| |
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|
| T |
48091411 |
ctttg |
48091407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 48091711 - 48091602
Alignment:
| Q |
42 |
ctatataagtttaatgttaatcacattattatgggggatataaattttgcatggttgctgagtgagggagaattaggtcgaagattcaatcttcactctc |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091711 |
ctatataagtttaatgttaatcacattattatgggggatataaattttgcatggttgctgagtgagggagaattaggtcgaagattcaatcttcactctc |
48091612 |
T |
|
| Q |
142 |
aacatagaaat |
152 |
Q |
| |
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|| |||||||| |
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| T |
48091611 |
aa-atagaaat |
48091602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 346
Target Start/End: Complemental strand, 48074531 - 48074379
Alignment:
| Q |
194 |
actgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagta |
293 |
Q |
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|||||| | |||||| |||||| |||||| ||||| ||||| |||| | ||||||||||||||||||||||||| || |||||| |||||||| |
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| T |
48074531 |
actgataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtg |
48074432 |
T |
|
| Q |
294 |
gttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaa |
346 |
Q |
| |
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||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||| |
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| T |
48074431 |
gttgctaagtagttattgttgccattgtcaacaagtgaatcaccaaaaacaaa |
48074379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 204 - 352
Target Start/End: Complemental strand, 1807383 - 1807235
Alignment:
| Q |
204 |
tcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagt |
303 |
Q |
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|||||||| ||| ||||||| || ||||| || || ||| ||||||||||||||||||| ||||||||||||| |||||| |||||||| || || | |
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| T |
1807383 |
tcaggaatattgaagccatttgaaaaacgaccagttggtttacgagttggataatcaattccataaggaggagaatcagcacgagcagttgtaagcaaat |
1807284 |
T |
|
| Q |
304 |
aattattgttaccattatcaacaagagaatcaccaaacacaaagaaagc |
352 |
Q |
| |
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|||| || || |||||||||||||| ||||| ||||| ||||| ||||| |
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| T |
1807283 |
aattgttatttccattatcaacaagtgaatctccaaatacaaaaaaagc |
1807235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 190 - 352
Target Start/End: Complemental strand, 48100499 - 48100337
Alignment:
| Q |
190 |
cttaactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagc |
289 |
Q |
| |
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|||||||||| | |||||||| ||| ||||| ||||| || ||||| || |||| || ||||||||||| ||||||||||||| |||||| | ||| |
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| T |
48100499 |
cttaactgataagatcaggaatattgagaccattggagaatcgaccggttggcctaccggtcggataatcaattccataaggaggagaatcagccctagc |
48100400 |
T |
|
| Q |
290 |
agtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagc |
352 |
Q |
| |
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||||||| | || ||||| ||||| ||| | |||||||| ||||||||||| ||||||||||| |
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| T |
48100399 |
agtagttaccaaataattgttgttgccactgtcaacaagtgaatcaccaaatacaaagaaagc |
48100337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 48091759 - 48091728
Alignment:
| Q |
1 |
ccccaagtgcttgacctgcaaaatcattgcat |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
48091759 |
ccccaagtgcttgacctgcaaaatcattgcat |
48091728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 48083776 - 48083711
Alignment:
| Q |
203 |
gtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccata |
268 |
Q |
| |
|
|||||| || |||||||||||||||||||| || || || || || ||||||||||||||||||| |
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| T |
48083776 |
gtcagggatattgtagccattagagaaacgccctgtaggcctgtgacttggataatcaatgccata |
48083711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 349
Target Start/End: Original strand, 7388254 - 7388350
Alignment:
| Q |
253 |
gataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaa |
349 |
Q |
| |
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|||||||||| |||||||| || |||||||| || |||||||| || |||||||| || || |||||||||||||| ||||| |||||||| ||||| |
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| T |
7388254 |
gataatcaataccataagggggtgcatcagcacgtgcagtagtagccaagtaattgttatttccattatcaacaagtgaatctccaaacactaagaa |
7388350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 355
Target Start/End: Original strand, 35355230 - 35355392
Alignment:
| Q |
193 |
aactgatgaagtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagt |
292 |
Q |
| |
|
||||||| || ||||||| ||| ||||||| ||||||||||| |||||| |||||||||| |||||||||||||||| ||| || ||||| || | |
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| T |
35355230 |
aactgattaaatcaggaacgtttaagccattggagaaacgtccagtgggttgacgagttggaaaatcaatgccataaggtggataattggctcgcgccga |
35355329 |
T |
|
| Q |
293 |
agttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaagcacg |
355 |
Q |
| |
|
|| || || |||| || || |||||||||||||| || || |||||||| ||||||||||| |
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|
| T |
35355330 |
ggtagccaaaaaattgttattgccattatcaacaagtgagtctccaaacacgaagaaagcacg |
35355392 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 355
Target Start/End: Original strand, 29769753 - 29769856
Alignment:
| Q |
252 |
ggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaag |
351 |
Q |
| |
|
|||||||| |||||||||||||||| || || || || || ||| || ||||||||||| ||| | |||||||| || |||||||| |||||||||| |
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|
| T |
29769753 |
ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag |
29769852 |
T |
|
| Q |
352 |
cacg |
355 |
Q |
| |
|
|||| |
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|
| T |
29769853 |
cacg |
29769856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 346
Target Start/End: Original strand, 6343053 - 6343196
Alignment:
| Q |
203 |
gtcaggaatgttgtagccattagagaaacgtccggtgggtctacgagttggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaag |
302 |
Q |
| |
|
|||||| |||||| |||||| |||||||| || | | |||| ||||| || ||||||| ||||||||| | |||||| ||||||||||| |||| | |
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|
| T |
6343053 |
gtcaggcatgttgaggccattggagaaacgaccagaagctctatgagtttgagaatcaattccataaggatatgaatcagcacgagcagtagtggctagg |
6343152 |
T |
|
| Q |
303 |
taattattgttaccattatcaacaagagaatcaccaaacacaaa |
346 |
Q |
| |
|
| ||||| || |||||||| ||||||||||||||||| ||||| |
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|
| T |
6343153 |
aagttattatttccattatccacaagagaatcaccaaaaacaaa |
6343196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 12945917 - 12945955
Alignment:
| Q |
302 |
gtaattattgttaccattatcaacaagagaatcaccaaa |
340 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
12945917 |
gtaattattgttaccattatcaagaagagaatctccaaa |
12945955 |
T |
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