View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6362_high_7 (Length: 255)

Name: NF6362_high_7
Description: NF6362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6362_high_7
NF6362_high_7
[»] chr3 (5 HSPs)
chr3 (9-153)||(38791077-38791221)
chr3 (136-195)||(6456479-6456538)
chr3 (136-195)||(6760309-6760368)
chr3 (128-175)||(407048-407095)
chr3 (128-175)||(416847-416894)
[»] chr7 (1 HSPs)
chr7 (136-195)||(39676130-39676189)
[»] chr6 (2 HSPs)
chr6 (62-119)||(20785842-20785899)
chr6 (128-175)||(24183531-24183578)
[»] chr2 (1 HSPs)
chr2 (62-119)||(15046315-15046372)
[»] chr1 (2 HSPs)
chr1 (128-175)||(24346430-24346477)
chr1 (128-175)||(24358702-24358749)


Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 38791221 - 38791077
Alignment:
Q  9 gattatactccaacatgtttgtcgtctacaaagcaacccgcatcaatattaattttcaaaacacccaaaggagggcttttccaacctgttgagtactctg 108  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38791221 gattagactccaacatgtttgtcgtctacaaaacaacccgcatcaatattaattttcaaaacacccaaaggagggcttttccaacctgtcgagtactctg 38791122  T
Q  109 gtatagactctaccaaatttgtcccagctcatccaataatacata 153  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||    
T  38791121 gtataggctctaccaaatttgtcccatctcatccaataatacata 38791077  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 6456538 - 6456479
Alignment:
Q  136 ctcatccaataatacatatatgtaattacaagtcttcacaataacaacattttagcttga 195  Q
    |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||    
T  6456538 ctcatccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttga 6456479  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 6760309 - 6760368
Alignment:
Q  136 ctcatccaataatacatatatgtaattacaagtcttcacaataacaacattttagcttga 195  Q
    |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||    
T  6760309 ctcatccaataatagatatatgtaattacaagccttcacagtaacaacattttagtttga 6760368  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 407095 - 407048
Alignment:
Q  128 tgtcccagctcatccaataatacatatatgtaattacaagtcttcaca 175  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  407095 tgtcccagctcgtccaataatacatatatgtaattacaagccttcaca 407048  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 416847 - 416894
Alignment:
Q  128 tgtcccagctcatccaataatacatatatgtaattacaagtcttcaca 175  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  416847 tgtcccagctcgtccaataatacatatatgtaattacaagccttcaca 416894  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 39676189 - 39676130
Alignment:
Q  136 ctcatccaataatacatatatgtaattacaagtcttcacaataacaacattttagcttga 195  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  39676189 ctcatccaataatacatatatgtaattacaagacttcacagtaacaacattttagtttga 39676130  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 20785899 - 20785842
Alignment:
Q  62 tttcaaaacacccaaaggagggcttttccaacctgttgagtactctggtatagactct 119  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  20785899 tttcaaaacacccaaaggagggcttttccaaccttttgaggactctggtataggctct 20785842  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 24183578 - 24183531
Alignment:
Q  128 tgtcccagctcatccaataatacatatatgtaattacaagtcttcaca 175  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  24183578 tgtcccagctcgtccaataatacatatatgtaattacaagccttcaca 24183531  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 119
Target Start/End: Complemental strand, 15046372 - 15046315
Alignment:
Q  62 tttcaaaacacccaaaggagggcttttccaacctgttgagtactctggtatagactct 119  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||    
T  15046372 tttcaaaacacccaaaggatggcttttccaaccttttgaggactctggtataggctct 15046315  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 24346430 - 24346477
Alignment:
Q  128 tgtcccagctcatccaataatacatatatgtaattacaagtcttcaca 175  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  24346430 tgtcccagctcgtccaataatacatatatgtaattacaagccttcaca 24346477  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 24358702 - 24358749
Alignment:
Q  128 tgtcccagctcatccaataatacatatatgtaattacaagtcttcaca 175  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  24358702 tgtcccagctcgtccaataatacatatatgtaattacaagccttcaca 24358749  T

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