View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6362_low_1 (Length: 438)

Name: NF6362_low_1
Description: NF6362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6362_low_1
NF6362_low_1
[»] chr4 (13 HSPs)
chr4 (8-423)||(20449714-20450129)
chr4 (14-423)||(20277980-20278381)
chr4 (66-418)||(20439067-20439423)
chr4 (172-423)||(20461302-20461553)
chr4 (178-423)||(20475518-20475763)
chr4 (172-423)||(20442865-20443116)
chr4 (166-423)||(20430497-20430754)
chr4 (8-159)||(20430792-20430942)
chr4 (9-150)||(20475823-20475964)
chr4 (21-132)||(20461634-20461745)
chr4 (8-74)||(20439584-20439650)
chr4 (35-107)||(20443188-20443260)
chr4 (198-403)||(37065391-37065596)
[»] chr1 (3 HSPs)
chr1 (240-409)||(40970769-40970938)
chr1 (307-409)||(14268658-14268760)
chr1 (283-406)||(40982453-40982576)
[»] chr7 (1 HSPs)
chr7 (307-409)||(45485652-45485754)


Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 423
Target Start/End: Complemental strand, 20450129 - 20449714
Alignment:
Q  8 gagcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtaga 107  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  20450129 gagcaaagacctagcaaaagatgcatagagtttgcaaataaaaccgatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgcaga 20450030  T
Q  108 ctgtccttccaatttaaccttctttcaaactattttacttacattttatcttatatgctatcatttggaaaattctaatgataatttttggtttacatgc 207  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20450029 ttgtccttccaatttaaccttctttcaaactattttacttacattttatcttatatgctatcatttggaaaattctaatgataatttttggtttacatgc 20449930  T
Q  208 agagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatctccggcatgtcttactaacagtctcatttc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20449929 agagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatctccggcatgtcttactaacagtctcatttc 20449830  T
Q  308 atttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgatattttgtaagtcactcaagtaagctagagaaggtaaagattttcaca 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20449829 atttgaatttgttggaattcaaaacataaaaactgagttggactttacacgatatattgtaagtcactcaagtaagctagagaaggtaaagattttcaca 20449730  T
Q  408 cccacttcaaagaaaa 423  Q
    ||||||||||||||||    
T  20449729 cccacttcaaagaaaa 20449714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 423
Target Start/End: Complemental strand, 20278381 - 20277980
Alignment:
Q  14 agacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtagactgtcc 113  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||           ||||||||| |||||    
T  20278381 agacctagcaaaagatacatagagtttgctaataaaacagatcaatacattaattaattcaatacaatctatat-----------ttgtgtagattgtcc 20278293  T
Q  114 ttccaatttaaccttctttcaaactattttacttacattttatcttatatgctat----catttggaaaattctaatgataatttttggtttacatgcag 209  Q
    |  ||||||||||||||||||||||||||||||||||||||||||| ||||||||    || ||||||||||||||||||||||||||| ||||||||||    
T  20278292 tagcaatttaaccttctttcaaactattttacttacattttatctt-tatgctatatatcagttggaaaattctaatgataatttttggcttacatgcag 20278194  T
Q  210 agaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatctccggcatgtcttactaacagtctcatttcat 309  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| | |||||||||| |||    
T  20278193 agaaacattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccatcaatatctccggcatgtcttacaagcagtctcattacat 20278094  T
Q  310 ttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgatattttgtaagtcactcaagtaagctagagaaggtaaagattttcacacc 409  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||| || ||| ||||||||||||| || ||||||||||||||||||||||    
T  20278093 ttgaatttgttggaattcaaaacataaaaactgatctggactttacgcgatatattataaatcactcaagtaagttacagaaggtaaagattttcacacc 20277994  T
Q  410 cacttcaaagaaaa 423  Q
    || |||||||||||    
T  20277993 cagttcaaagaaaa 20277980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 66 - 418
Target Start/End: Complemental strand, 20439423 - 20439067
Alignment:
Q  66 attaattcaatacaatctatatgtgatctatatttgtgtagactgtccttccaatttaaccttctttcaaactattttacttacattttatcttatatgc 165  Q
    ||||| ||||||||||||||||  ||||||||||| |||||| ||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20439423 attaaatcaatacaatctatatccgatctatatttatgtagattgtcctagcaatttaaccttctttctaactattttacttacattttatcttatatgc 20439324  T
Q  166 tat----catttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttggg 261  Q
    |||    || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||    
T  20439323 tatatatcagttggaaaattctaatgataatttttggtttacatgcagagaaacattgaaatcaattcccgaagaaaggaggttgggaacccgagttggg 20439224  T
Q  262 tggagccattgatatctccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgata 361  Q
    |||||||||||||||||||  |||||||||  | |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20439223 tggagccattgatatctcccacatgtcttagaagcagtctcattacatttgaatttgttggaattcaaaacataaaaactgaattggactttacgcgata 20439124  T
Q  362 ttttgtaagtcactcaagtaagctagagaaggtaaagattttcacacccacttcaaa 418  Q
    | |||||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  20439123 tattgtaagtcactcaagtaagttacaaaaggtaaagattttcacacccacttcaaa 20439067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 172 - 423
Target Start/End: Complemental strand, 20461553 - 20461302
Alignment:
Q  172 ttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccatt 271  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20461553 ttggaaaattctaacgataatgtttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccatc 20461454  T
Q  272 gatatctccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgatattttgtaagt 371  Q
      |  ||||| |||||||||| | |||||||||| |||||||||||   ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  20461453 agtgactccgacatgtcttacaaccagtctcattacatttgaatttaaaggaattcaagacataaaaactgagttggactttacgcgatatattgtaagt 20461354  T
Q  372 cactcaagtaagctagagaaggtaaagattttcacacccacttcaaagaaaa 423  Q
    ||||||| |||| ||||||||||||||||||||||||||| || ||||||||    
T  20461353 cactcaaataagttagagaaggtaaagattttcacacccagtttaaagaaaa 20461302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 178 - 423
Target Start/End: Complemental strand, 20475763 - 20475518
Alignment:
Q  178 aattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatc 277  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |  |    
T  20475763 aattctaatgataatttttggtttacatgcagagaaaaattcaaaccaatttccgaagaaaggaggttggaaactcgagttgggtggagccatcggtgac 20475664  T
Q  278 tccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgatattttgtaagtcactca 377  Q
    ||||||||||||||  | |||||||||| |||||||||||   ||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||    
T  20475663 tccggcatgtcttataaccagtctcattacatttgaatttaaaggaattcaagacataaaaactgagttggactttacgcgataaattgtaagtcactca 20475564  T
Q  378 agtaagctagagaaggtaaagattttcacacccacttcaaagaaaa 423  Q
    |||| | ||||||||||||||||||||||||||| || ||||||||    
T  20475563 agtaggttagagaaggtaaagattttcacacccagtttaaagaaaa 20475518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 172 - 423
Target Start/End: Complemental strand, 20443116 - 20442865
Alignment:
Q  172 ttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccatt 271  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20443116 ttggaaaattctaatgatagtttttgctttacatgcagagaaaaattgaaatcaattcccggagaaaggaggttggaaactcgagttgggtggagccatt 20443017  T
Q  272 gatatctccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgatattttgtaagt 371  Q
      || |||||||||||||| | |  | ||||||| |||||||||||   |||||||||||||| ||||||||  ||||||||||||||||| ||||||||    
T  20443016 agtaactccggcatgtcttgcaacaactctcattacatttgaatttaaaggaattcaaaacattaaaactgacctggactttacgcgatatattgtaagt 20442917  T
Q  372 cactcaagtaagctagagaaggtaaagattttcacacccacttcaaagaaaa 423  Q
    |||||||||||| ||  ||||||||||||||||||||||||| |||||||||    
T  20442916 cactcaagtaagttactgaaggtaaagattttcacacccactgcaaagaaaa 20442865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 166 - 423
Target Start/End: Complemental strand, 20430754 - 20430497
Alignment:
Q  166 tatcatttggaaaattctaatgataatttttggtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtgga 265  Q
    ||||| ||||||||| | |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||    
T  20430754 tatcagttggaaaatacaaatgttaatttttggtttacatgcagggaaaatttgaaatcaattcccgaagaaaggaggttggaaactctagatgggtgga 20430655  T
Q  266 gccattgatatctccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgatatttt 365  Q
    |||||   || |||||||||||||||| | |||||||||| |||||||||||   |||||||||||||| ||||||||||||||||||||||||||| ||    
T  20430654 gccatcagtaactccggcatgtcttacaaccagtctcattacatttgaatttaaaggaattcaaaacattaaaactgagttggactttacgcgatatatt 20430555  T
Q  366 gtaagtcactcaagtaagctagagaaggtaaagattttcacacccacttcaaagaaaa 423  Q
    ||||||||||||| |||| || ||||||||||||||||||||| || |||||||||||    
T  20430554 gtaagtcactcaactaagttacagaaggtaaagattttcacactcagttcaaagaaaa 20430497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 20430942 - 20430792
Alignment:
Q  8 gagcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtaga 107  Q
    ||||| |||||||| ||||||||||| |||||||||  |||||| | | ||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  20430942 gagcaaagacctagtaaaagatacatggagtttgca--taaaaccgttaaacaaattaattaattcaaaacaatctatatctgatctatatttgtgtaga 20430845  T
Q  108 ctgtccttccaatttaaccttctttcaaactattttacttac-attttatctt 159  Q
     | ||||  |||||||||||||||| |||| ||||||||||| ||||||||||    
T  20430844 ttttcctagcaatttaaccttcttttaaaccattttacttacaattttatctt 20430792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 20475964 - 20475823
Alignment:
Q  9 agcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtagac 108  Q
    |||| |||| ||||||||||||||| ||||||||||||||||| ||| |||||||||||||||| || |||||  |||| ||| |||||||||||||||     
T  20475964 agcaaagacttagcaaaagatacatggagtttgcaaataaaaccgataaacaaattaattaattaaaaacaatagatatctgaactatatttgtgtagat 20475865  T
Q  109 tgtccttccaatttaaccttctttcaaactattttacttaca 150  Q
    | |||| ||||||||||||||||| ||||||||||| |||||    
T  20475864 tttcctaccaatttaaccttcttttaaactattttatttaca 20475823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 20461745 - 20461634
Alignment:
Q  21 gcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtagactgtccttccaat 120  Q
    |||||||||||||  |||||||||||| ||| ||| ||||||||||||||||||| |||||  |||| | ||||||||||||||||| | |||| |||||    
T  20461745 gcaaaagatacatgtagtttgcaaatataaccgataaacaaattaattaattcaaaacaatagatatctaatctatatttgtgtagattttcctaccaat 20461646  T
Q  121 ttaaccttcttt 132  Q
    ||||| ||||||    
T  20461645 ttaactttcttt 20461634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 20439650 - 20439584
Alignment:
Q  8 gagcagagacctagcaaaagatacatagagtttgcaaataaaacagatcaacaaattaattaattca 74  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  20439650 gagcaaagacctagcaaaagatacatagaatttgcaaataaaacagatcaataaattaattaattca 20439584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 20443260 - 20443188
Alignment:
Q  35 gagtttgcaaataaaacagatcaacaaattaattaattcaatacaatctatatgtgatctatatttgtgtaga 107  Q
    ||||||||||||||||||| | ||||| ||||||||||| | ||||||||||| |||||||||||||||||||    
T  20443260 gagtttgcaaataaaacagttaaacaatttaattaattctaaacaatctatatctgatctatatttgtgtaga 20443188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 403
Target Start/End: Complemental strand, 37065596 - 37065391
Alignment:
Q  198 gtttacatgcagagaaaaattgaaatcaattcccgaagaaaggaggttggaaactcgagttgggtggagccattgatatctccggcatgtcttactaaca 297  Q
    ||||||||||||| |||| || |||  || || | ||||||||||||||||||||||||||||||||  ||||  |   ||||| |||||||| | |  |    
T  37065596 gtttacatgcagaaaaaatttaaaaaaaactctcaaagaaaggaggttggaaactcgagttgggtgggaccatcaacgactccgacatgtctttcaacta 37065497  T
Q  298 gtctcatttcatttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgatattttgtaagtcactcaagtaagctagagaaggtaaa 397  Q
    || | ||| | |||||||||   ||||||||||| |||||| ||||| |||| ||||||| |||  || ||   | |||||||||  |||||||||| ||    
T  37065496 gtttaattacgtttgaatttacaggaattcaaaatataaaagctgaggtggattttacgcaatacattttataccgctcaagtaaattagagaaggtcaa 37065397  T
Q  398 gatttt 403  Q
    ||||||    
T  37065396 gatttt 37065391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 409
Target Start/End: Original strand, 40970769 - 40970938
Alignment:
Q  240 gaggttggaaactcgagttgggtggagccattgatatctccggcatgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaa 339  Q
    |||||||||||||||  ||||||||||||||   || ||||  |||||||| | ||||||||| ||  ||||||||||   || |||||||  ||| | |    
T  40970769 gaggttggaaactcggcttgggtggagccatccgtaactccaacatgtctttcaaacagtctccttaaatttgaatttaaagggattcaaagaatacaga 40970868  T
Q  340 ctgagttggactttacgcgatattttgtaagtcactcaagtaagctagagaaggtaaagattttcacacc 409  Q
     |||||| |||||||| |||||| || | | |||||||| |||| || ||||||||||||||||||||||    
T  40970869 atgagttagactttacacgatatattattaatcactcaactaagttaaagaaggtaaagattttcacacc 40970938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 307 - 409
Target Start/End: Original strand, 14268658 - 14268760
Alignment:
Q  307 catttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgatattttgtaagtcactcaagtaagctagagaaggtaaagattttcac 406  Q
    |||||||||||   ||||||||||||||| ||||||||||||||||| | |||||| || ||  ||| ||||||||| |  |||||||||| ||||||||    
T  14268658 catttgaatttaaaggaattcaaaacatacaaactgagttggactttgcacgatatattatagatcattcaagtaagttgaagaaggtaaaaattttcac 14268757  T
Q  407 acc 409  Q
    |||    
T  14268758 acc 14268760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 406
Target Start/End: Original strand, 40982453 - 40982576
Alignment:
Q  283 catgtcttactaacagtctcatttcatttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgatattttgtaagtcactcaagtaa 382  Q
    |||||||| | |||| |||||||  ||||||||||   |||||||||||| || |||  |||||| ||||||| |||||  || ||| || |||||||||    
T  40982453 catgtctttcaaacaatctcattatatttgaatttagaggaattcaaaacgtacaaaaagagttgaactttacccgatacattataaatcgctcaagtaa 40982552  T
Q  383 gctagagaaggtaaagattttcac 406  Q
      |  |||||||||||||||||||    
T  40982553 tttgaagaaggtaaagattttcac 40982576  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 409
Target Start/End: Original strand, 45485652 - 45485754
Alignment:
Q  307 catttgaatttgttggaattcaaaacataaaaactgagttggactttacgcgatattttgtaagtcactcaagtaagctagagaaggtaaagattttcac 406  Q
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T  45485652 catttgaatttaaagaaattcaaaacatacaaactgagttggactttgcacgatatattatagatcattcaagtaaattgaagaaggtaaaaattttcac 45485751  T
Q  407 acc 409  Q
    |||    
T  45485752 acc 45485754  T

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