View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6362_low_2 (Length: 420)
Name: NF6362_low_2
Description: NF6362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6362_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 78 - 412
Target Start/End: Original strand, 41339206 - 41339540
Alignment:
| Q |
78 |
ttcaattaagcataatatatttttaatgtttaaattttatgcagagatatcacaattacacatataacatatctgagagacgagggaatttgaattttaa |
177 |
Q |
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| T |
41339206 |
ttcaattaagcataatatatttttaatgtttaaattttatgcagagatatcacaattacacatataacatatctgagagacgagggaatttgaattttaa |
41339305 |
T |
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| Q |
178 |
ttcaaggggaagatcttctagacccggtcagttccacaggcagccaaacaatttgaattctaattcaagggaaaggttttccagccgtggtcgaaatcat |
277 |
Q |
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| T |
41339306 |
ttcaaggggaagatcttctagacccggtcagttccacaggcagccaaacaatttgaattctaattcaagggaaaggttttccagccgtggtcgaaatcat |
41339405 |
T |
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| Q |
278 |
tacagatggaaaaatgagcaaccaggtatctaaatggttatttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataa |
377 |
Q |
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| T |
41339406 |
tgcagatggaaaaatgagcaaccaggtatctaaatggttatttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataa |
41339505 |
T |
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| Q |
378 |
atataaaactatggattataataagtgcctttgct |
412 |
Q |
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| T |
41339506 |
atataaaactatggattataataagtgcctttgct |
41339540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 41339163 - 41339209
Alignment:
| Q |
18 |
aggttgatatttttcacccttctttcacctgcaaatgttctatttca |
64 |
Q |
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| T |
41339163 |
aggttaatatttttcacccttctttcacctgcaaatgttctatttca |
41339209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 36136465 - 36136541
Alignment:
| Q |
245 |
agggaaaggttttccagccgtggtcgaaatcattacagatggaaaaatgagcaaccaggtatctaaatggttatttc |
321 |
Q |
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| T |
36136465 |
agggaaaggttttccagctgtggtcaaaatcattacagacggaaaaatgagcaaccaggtatctatatggttatttc |
36136541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 401
Target Start/End: Original strand, 36136571 - 36136653
Alignment:
| Q |
319 |
ttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattataataa |
401 |
Q |
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| T |
36136571 |
ttcagttatatttgtaactaactatttttctttaacttttgatgcggatatcattataaatatataactgttgattataataa |
36136653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 146 - 283
Target Start/End: Original strand, 22629768 - 22629905
Alignment:
| Q |
146 |
atatctgagagacgagggaatttgaattttaattcaaggggaagatcttctagacccggtcagttccacaggcagccaaacaatttgaattctaattcaa |
245 |
Q |
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| T |
22629768 |
atatccgagagaagagggaattgaaatttcaattcagcggaaaggtcttcccgacccggttagtttcacaggaaaccgaaaaatttgaactctaatttga |
22629867 |
T |
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| Q |
246 |
gggaaaggttttccagccgtggtcgaaatcattacaga |
283 |
Q |
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| T |
22629868 |
agtaaaggttttccagccttggtcgaaatcattacaga |
22629905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 22629677 - 22629724
Alignment:
| Q |
78 |
ttcaattaagcataatatatttttaatgtttaaattttatgcagagata |
126 |
Q |
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| T |
22629677 |
ttcaattaagcataatatatttt-aatgtttaaattttatgcagagata |
22629724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 397
Target Start/End: Original strand, 22629970 - 22630048
Alignment:
| Q |
319 |
ttcaattagatttgtaacaaactatttctctataacttttcatgaggatatcattataaatataaaactatggattata |
397 |
Q |
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| T |
22629970 |
ttcagttagatttgtaactaactttttcacttaaatttttcataaggatatcattataaatatataactattgattata |
22630048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 22630454 - 22630400
Alignment:
| Q |
73 |
gctggttcaattaagcataatatatttttaatgtttaaattttatgcagagatat |
127 |
Q |
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| T |
22630454 |
gctgattcaattaagcgtaatatattgtaaatgtttaaattttatgcagagatat |
22630400 |
T |
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