View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6362_low_6 (Length: 286)
Name: NF6362_low_6
Description: NF6362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6362_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 276
Target Start/End: Complemental strand, 48091318 - 48091038
Alignment:
| Q |
9 |
aacttataattagcaatgtatatgaagactgtaagtagaggaatgaggaaaggtgctatatatata--gtgtgtcagagatattaatatgtatatgatga |
106 |
Q |
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| T |
48091318 |
aacttaaaattagcaatgtatatgaagactgtaagtagaggaatgaggaaaggtgctatatatatatagtgtgtcagagatattaatatgtatatgatga |
48091219 |
T |
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| Q |
107 |
ttttggaaaataatattgatggaagaatggcccacacaacaaaaggt-----------agtagttgcattttatt----catacattggaaaataaaatt |
191 |
Q |
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| T |
48091218 |
ttttggaaaataatattgatggaagaatggcccacacaacaaaaggtagtacacaggtagtagttgcattttattcatacatacattggaaaataaaatt |
48091119 |
T |
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| Q |
192 |
taaggtgtggactgtcatgcatatatacattgcatatatagtaagatgcatgttaaagtaccctcttttgcactctgtagtatta |
276 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48091118 |
taaggtgtggactgtcatgc----atacattgcatatatagtaagatgcatgttaaagtaccctcttttgcactctgtagtatta |
48091038 |
T |
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