View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_high_1 (Length: 1033)
Name: NF6363_high_1
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 330 - 792
Target Start/End: Complemental strand, 52444412 - 52443926
Alignment:
| Q |
330 |
ttaacagcctatagttttcaacaactttcgtgttgatttcattt---gcatagttgattttgatataaattaactctcggtctaaggttatcgttaaaat |
426 |
Q |
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||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52444412 |
ttaacagcctatagttttcaacaactttcgtgttgataaaaatacgagcatagttgattttgatataaattaactctcggtctaaggttatcgttaaaat |
52444313 |
T |
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| Q |
427 |
tttggttttaaaagagttcttatatttagatatat--ctaactcttagtaacaaaaataaaataaagatatatctaactcttgaatgctcgtattgttga |
524 |
Q |
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| T |
52444312 |
tggggttttaaaagagttcttatatttagatatatatctaactcttagtaacaaaaataaaataaagatatatctaactcttgaatgctcgtattgttgg |
52444213 |
T |
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| Q |
525 |
tat--------------aaat------tcacttttgctaattgtcttatgagggactattttatttttacggagtatagtatatatatccaacaatccgg |
604 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52444212 |
tatgagtcacttagactaaatacattttcacttttgctaattgtcttatgagggactattttatttttacggagtatagtatatatatccaacaatccgg |
52444113 |
T |
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| Q |
605 |
ggttaaatatcccaacttatttgaattnnnnnnnttgaagtcttggggttcaaatccagacaaaaccggaaaaattaacgtagcaactaacatttaccat |
704 |
Q |
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| T |
52444112 |
ggttaaatatcccaacttatttgaattaaaaaaattgaagtcttggggttcaaattcagacaaaacaggaaaaattaacttaacaactaacatttaccat |
52444013 |
T |
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| Q |
705 |
tnnnnnnngtccatcatatcatacaacttcatacttaatttgaattatnnnnnnnnnggtttaaattttgtttgactcaaatataatg |
792 |
Q |
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| T |
52444012 |
taaaaaatgtccatcatatcatacaacttcatacttaatttgaatta-aaaaaaaaaggtttaaattttgtttgactcaaatataatg |
52443926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 52444798 - 52444603
Alignment:
| Q |
15 |
aagattgacaaataattaatcaagactgggaccaacatacacaagtttgtcaagaatagaagacttggaccgcagtacaccnnnnnnnnnnnnnnnnnnn |
114 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52444798 |
aagattgacaaataattaatcaagacttggaccaacatacacaagtttgtcaagaatagaagacttggaccgcagtaccccaaaaaaagaaaaaagaaaa |
52444699 |
T |
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| Q |
115 |
nggaagacttggacagtgtgaactcattctaactagtttatggaaacattttacatcatttacctatagtatagacaaagactatggagtccaaac |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52444698 |
aggaagacttggacagtgtgaactcattctaactagtttatggaaacattttacttcatttacctatagtatagacaaagactatggaatccaaac |
52444603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 232 - 335
Target Start/End: Complemental strand, 52444562 - 52444459
Alignment:
| Q |
232 |
aaatgctgactgaaataattattagacttaaattatcttcggcctcaactttagattaccatatatagtccctttctttttaagataaaaataagtcatt |
331 |
Q |
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| T |
52444562 |
aaatgctgactgaaataattattagacttaaattatcttcggcctcaactttagattaccatatatagtccctttctttttaagataaaaataagtcatt |
52444463 |
T |
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| Q |
332 |
aaca |
335 |
Q |
| |
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|||| |
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| T |
52444462 |
aaca |
52444459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 877 - 988
Target Start/End: Complemental strand, 52443870 - 52443757
Alignment:
| Q |
877 |
cttagattagatttttcaatattgtgaggagatgaca--attataatttagaataaactagtaaacgagtttttaattttacatgaaactaaaataatta |
974 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52443870 |
cttagattagatttttcaattatgtgaggagatgacacaattataatttagaataaactactaaacgagtttttaattttacatgaaactaaaataatta |
52443771 |
T |
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| Q |
975 |
aatatattaactcc |
988 |
Q |
| |
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|||||||||||||| |
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| T |
52443770 |
aatatattaactcc |
52443757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 818 - 849
Target Start/End: Complemental strand, 52443921 - 52443890
Alignment:
| Q |
818 |
aaattaattaatttatgcacatttaatgttac |
849 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52443921 |
aaattaattaatttatgcacatttaatgttac |
52443890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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