View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_high_15 (Length: 302)
Name: NF6363_high_15
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 33992981 - 33992702
Alignment:
| Q |
1 |
atatgaattcataatgattattaattaaagcaagattttcatacgctgccctggatcgcaattgtatttgtgacatcaaggtttttgatgtctataatac |
100 |
Q |
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| T |
33992981 |
atatgaatacataatgattattaattaaagcaagattttcatacgctgccctggatcgcaattgtatttgtgacatcaaggtttttgatgtctataatac |
33992882 |
T |
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| Q |
101 |
aattgcgattgaggtagtatcgatgatatttgatcacgattctttgcaatatcaaaattgcgactgcgatttaaacgattgaggaacaattgacttacca |
200 |
Q |
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| T |
33992881 |
aattgcgattgaggtagcatcgatgatatttgatcacgattctttgcaatatcaaaattgtgactgcgatttaaacgattgaggaacaattgacttacca |
33992782 |
T |
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| Q |
201 |
gaataccatttgcaaacctgactaggacagtcataacaagggcataagcagctaattcggttgaaccaatatgaccaatg |
280 |
Q |
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| T |
33992781 |
gaataccatttgcaaacctgactaggacagtcataacaagggcataagcagctaattcggttgaaccaatatgaccaatg |
33992702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 33983035 - 33982944
Alignment:
| Q |
189 |
attgacttaccagaataccatttgcaaacctgactaggacagtcataacaagggcataagcagctaattcggttgaaccaatatgaccaatg |
280 |
Q |
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| T |
33983035 |
attgacttaccagaataccatttgcaaatctgactaggacagtcataacaagggaataggcagctaactcggttgaaccaatgtaaccaatg |
33982944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 33993054 - 33992995
Alignment:
| Q |
57 |
cgcaattgtatttgtgacatcaaggtttttgatgtctataatacaattgcgattgaggtag |
117 |
Q |
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| T |
33993054 |
cgcaattgtacttgtgacat-atggtttttgatatctataatactattgcgattgaggtag |
33992995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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