View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_high_3 (Length: 570)
Name: NF6363_high_3
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 52514999 - 52514446
Alignment:
| Q |
1 |
tatttggttattttatcttgtgtttttatgttaacatgttaagttgcaccaacatttaaggtttatcaagataaagccgtgaaggacaaagagaggtaca |
100 |
Q |
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| T |
52514999 |
tatttggttattttatcttgtgtttttatgttaacatgttaagttgcaccaacatttaaggtttatcaagataaagccgtgaaggacaaagagaggtaca |
52514900 |
T |
|
| Q |
101 |
taacagaaatggagtattaccgtgagaagctgaagaatgatgaagtcatcagtgatgctgtgccacttcgacagcgacttcctgaaccagatactgacat |
200 |
Q |
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| T |
52514899 |
taacagaaatggagtattaccgtgagaagctgaagaatgatgaagtcatcagtgatgctgtgccacttcgacagcgacttcctgaaccagatactgacat |
52514800 |
T |
|
| Q |
201 |
gttgaatgctgaggcagactctcttcaaactccggagcagagtagttcggacggaagtgatgactatgaagatgataaggcgaaggagaaagactttagt |
300 |
Q |
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| T |
52514799 |
gttgaatgctgaggcagactctcttcaaactccggagcagagtagtttggacggaagtgatgactatgaagatgataaggcgaaggagaaagactttagt |
52514700 |
T |
|
| Q |
301 |
gtggattcgttgcctgttataggacttggtgctgaatctatggattcagtagagagatcgtccaagttgggtttatgagcatcttcaggagagattgaga |
400 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52514699 |
gtggattcattgcctgttataggacttggtgctgaatctatggattcagtagagagatcgtccaagttgggtttatgagcatcttcaggagagatagaga |
52514600 |
T |
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| Q |
401 |
aagaagaaatgttagctagggaatggaataggattagatttttctatgaatatttttgaagttttattgcagttgaaactttgaggtaggattgagttgc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52514599 |
aagaagaaatgttagctagggaatggaataggattagatttttctatgaatatttttgaagttttattgcagttgaaactttgaggtaggattgagttgc |
52514500 |
T |
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| Q |
501 |
agtggttacttacttaagcacaattacagtgatcaactgggttttggcatttta |
554 |
Q |
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| T |
52514499 |
agtggttacttacttaagcacaattacagtgatcaactgggttttggcatttta |
52514446 |
T |
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