View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6363_high_30 (Length: 234)
Name: NF6363_high_30
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_high_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 21470198 - 21469996
Alignment:
| Q |
18 |
gaatgtaattatgtgttgtcagttgtcacttactggtcatgtcttcaatctgaagtgtccgtgaaaagatggaatatatggaaaaactcaaatttgtgt- |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21470198 |
gaatgtaattatgtgttgtcagttgtcacatactggacatgtcttcaatctgaagtgtccgtgaaaagatggaatatatggaaaaactcaaatttgtgtg |
21470099 |
T |
|
| Q |
117 |
-ctgaatctgaatgtatgtttttggataaaatgcggccctgtttggaaagagatcttattttgtagcttatagcacataagcgcttatgaataagctatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21470098 |
tctgaatctgaatgtatgtttttggataaaatgcggccctgtttggaaacagagcttattttgtagcttatagcacataagcgcttatgaataagctatt |
21469999 |
T |
|
| Q |
216 |
tat |
218 |
Q |
| |
|
||| |
|
|
| T |
21469998 |
tat |
21469996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 25827301 - 25827347
Alignment:
| Q |
170 |
cttattttgtagcttatagcacataagcgcttatgaataagctattt |
216 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
25827301 |
cttattttacagcttatagcatataagcgcttatgaataaactattt |
25827347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 33527325 - 33527262
Alignment:
| Q |
151 |
gccctgtttggaaagagatcttattttgtagcttatagcacataagcgcttatgaataagctattt |
216 |
Q |
| |
|
|||||||||||| | | | ||||||||| |||||| |||| |||||||||||||||||||||||| |
|
|
| T |
33527325 |
gccctgtttggataaacagcttattttgcagcttagagca--taagcgcttatgaataagctattt |
33527262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 43722469 - 43722428
Alignment:
| Q |
175 |
tttgtagcttatagcacataagcgcttatgaataagctatttat |
218 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
43722469 |
tttgtagcttatagcaca--agcgcttatgtataagctatttat |
43722428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University