View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6363_high_4 (Length: 542)
Name: NF6363_high_4
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 537
Target Start/End: Complemental strand, 41832988 - 41832470
Alignment:
| Q |
19 |
aaaacaagtgttggcatggcaaagggatcctctcctaaggactggttagatccacattgccatgaagctgagtttgagaggaggtgattcacacattgaa |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832988 |
aaaacaagtgtcggcatggcaaagggatcctctcctaaggactggttagatccacattgccatgaagctgagtttgagaggaggtgattcacacattgaa |
41832889 |
T |
|
| Q |
119 |
gattttagtttcttgaagttatttattcttggagaacgtccaatttagcaccttttgttataattcgatttgatgcatcattcaagacatgggttacaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832888 |
gattttagtttcttgaagttatttattcttggagaacgtccaatttagcactttttgttatagttcgatttgatgcatcattcaagacatgggttacaga |
41832789 |
T |
|
| Q |
219 |
ggttttgtactctgacaataagtttatcacctggtcttttgataataaagttattatgttcagtagtcagtaattatactgtagttccttgtggaaatta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41832788 |
ggttttgtactctgacaataagtttatcacctggtcttttgataataaagttattatgttcagtagtcagtaattatactatagttccttgtggaaatta |
41832689 |
T |
|
| Q |
319 |
tgggcttgaaacgttgaattctgtcgactactaatcgacgaagnnnnnnnngttcagtagctaagcaaatgaaacaggaagatacagagtggcccaagaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832688 |
tgggcttgaaacgttgaattctgtcgactactaatcgacgaagaaaaaaaagttcagtagctaagcaaatgaaacaggaagatacagagtggcccaagaa |
41832589 |
T |
|
| Q |
419 |
taatgaaagaaataaaaaccgttttcatgttcagaattctcttccaggtttatatattagcatggatgttttctgaaggaagataactgtacttaagtaa |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41832588 |
taatgaaagaaataaaaaccgttttcatgttcagaattctcttccaggtttatatattagcatggatgttttctgaaggaagataactgtacttaagtaa |
41832489 |
T |
|
| Q |
519 |
tgtggtaagaataatttac |
537 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
41832488 |
tgtggtaagaatagtttac |
41832470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University