View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_high_5 (Length: 447)
Name: NF6363_high_5
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_high_5 |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 177 - 440
Target Start/End: Original strand, 26815305 - 26815568
Alignment:
| Q |
177 |
tccatataactttgactgaaagacaaatagacatgcaaaaaggagaaccaacaataaactttgtatatactattccatttattgaagttgactatttttt |
276 |
Q |
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| T |
26815305 |
tccatataactttgactgaaagacaaatagacatgcaaaaaggagaaccaacaataaactttgtatatactattccatttattgaagttgactatttttt |
26815404 |
T |
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| Q |
277 |
caaacaattacaaaagaataaaaactatttagaaaaataaataagctatgaaatcttataaaacaattttccaatcaaatgctggtgtagactgctgatc |
376 |
Q |
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| T |
26815405 |
caaacaattacaaaagaataaaaactatttagaaaaataaataagctatgaaatcttataaaacaattttccaatcaaatgctggtgtagactgctgatc |
26815504 |
T |
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| Q |
377 |
agttcttctctgtactctgaagtaacttctttatgtacctttgcagaaccttggagaataatct |
440 |
Q |
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| T |
26815505 |
agttcttctctgtactctgaagtaacttctttatgtacctttgcagaaccttggagaataatct |
26815568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 26813398 - 26813560
Alignment:
| Q |
18 |
atatttggttcgatgatttatatgaagatgaaaatgaaaatgacgggta---gacagctgagttatatagtcttaattccaactcttggagaaacattga |
114 |
Q |
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| T |
26813398 |
atatttggttcgatgattcacatgacgatgaagatgaaaatgatgggtatttgacagctaggttatatagtcttaattccaactcttggagaaacattga |
26813497 |
T |
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| Q |
115 |
tgctccaccttactaccctcttccatgtgatagttggagtacttctacaatttacacttttgt |
177 |
Q |
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| T |
26813498 |
tgctccaccttactaccctcttccatgtgatagttggagtacttctacaatttacacttttgt |
26813560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 55781 - 55822
Alignment:
| Q |
67 |
gacagctgagttatatagtcttaattccaactcttggagaaa |
108 |
Q |
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| T |
55781 |
gacagctgagttatatagtcttaattctaactcttggagaaa |
55822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 21087815 - 21087866
Alignment:
| Q |
67 |
gacagctgagttatatagtcttaattccaactcttggagaaacattgatgct |
118 |
Q |
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| T |
21087815 |
gacaggtgagttatatagtcttaattcaaactcttggaaaaagcttgatgct |
21087866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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