View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_high_9 (Length: 381)
Name: NF6363_high_9
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_high_9 |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: scaffold0223 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 20708 - 20326
Alignment:
| Q |
1 |
ttactgaaaatgtcctttttaaatcttcttatgatgatattttcatgaaactttttagtatctaatatgaattcatttatagtttgtgttacttcaaatc |
100 |
Q |
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| T |
20708 |
ttactgaaaatgtcctttttaaatcttcttatgatgatattttcatgaaactttttagtatctaatatgagttcatttatagtttgtgttacttcaaatc |
20609 |
T |
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| Q |
101 |
aaaa--cattgttaatgctatttggaacatgtact---------taccaatctaatttccttaat--gtgttggtttatatgtgacagataggactagtt |
187 |
Q |
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| T |
20608 |
aaaaaacattgttaatgctatttggaacatgtactaaccaaacttaccaatctaatttccttaatatgtgttggtttatatttgacagataggactactt |
20509 |
T |
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| Q |
188 |
ccgtacataaaaaacaatcttttcaggagcatgatgatgatggatttggtgatcatgaatctcttggaatggaatctgattctctctttagctacagaaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20508 |
ccgtacataaaaaacaatcttttcaggagcatgatgatgatggatttggtgatcatgaatctcttggaatggaatctgattctctctttagctacagaaa |
20409 |
T |
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| Q |
288 |
tttctccccaaaaaggtcaccataactttattttcttctttagaaataatttcaaacttttcaaaggacttaaaagtagtata |
370 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20408 |
tttctccccaaaaaggtcaccatagctttattttcttctttagaaataatttcaaacttttcaaaggacttaaaagtagtata |
20326 |
T |
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