View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_low_11 (Length: 370)
Name: NF6363_low_11
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_low_11 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 65 - 370
Target Start/End: Original strand, 34790854 - 34791159
Alignment:
| Q |
65 |
cattagtcaatgaagtaagaggaaaattatgcgattccgcaattcctttacttgaagaaggaatagaaacctacgaaatcaatcaaaatagattaaacat |
164 |
Q |
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| T |
34790854 |
cattagtcaatgaagtaagaggaaaattatgcgattccgcaattcctttacttgaagaaggaatagaaacctacgaaatcaatcaaaatagattaaacat |
34790953 |
T |
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| Q |
165 |
aataatcaatcataaactaactacaaaatagtaatttgatgaaaagagaattacagagacaagtgaaccgggagcaagagaagatgcaaccatggaagat |
264 |
Q |
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| T |
34790954 |
aataatcaatcataaactaactacaaaatagtaatttgatgaaaagagaattacagagacaagtgaaccgggagcaagagaagatgcaaccatggaagat |
34791053 |
T |
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| Q |
265 |
tcagagagccaaattttggcggcgcctttggaaagagaatcggcggattcaacgtcggtaatttcagcaacgagagctgaatgtgaaatgaaagaaggga |
364 |
Q |
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| T |
34791054 |
tcagagagccaaattttggcggcgcctttggaaagagaatcggcggattcaacgtcggtaatttcagcaacgagagctgaatgtgaaatgaaagaaggga |
34791153 |
T |
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| Q |
365 |
agattc |
370 |
Q |
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|||||| |
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| T |
34791154 |
agattc |
34791159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 34673120 - 34672983
Alignment:
| Q |
14 |
catcatccaatgtcttagaagtttccaatccatagcatttgacgacacattcattagtcaatgaagtaagaggaaaattatgcgattccgcaattccttt |
113 |
Q |
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| T |
34673120 |
catcacccaatgccttacaagtttccaatccatagcatttgac---acactcagcagtcaatgaagtgagaggaaaattatgcgattccgcaatcccttt |
34673024 |
T |
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| Q |
114 |
acttgaagaaggaatagaaacctacgaaatcaatcaaaata |
154 |
Q |
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| T |
34673023 |
acttgaagaaggaatagaaacctacaaaatcaatcaaaata |
34672983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 214 - 370
Target Start/End: Complemental strand, 34672715 - 34672559
Alignment:
| Q |
214 |
attacagagacaagtgaaccgggagcaagagaagatgcaaccatggaagattcagagagccaaattttggcggcgcctttggaaagagaatcggcggatt |
313 |
Q |
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|||||||||||||||||||| ||||| |||||||| |||| ||| ||||| ||||| |||||||||||||||| ||||||||||||||| |||| ||||| |
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| T |
34672715 |
attacagagacaagtgaacccggagcgagagaagaagcaatcatagaagactcagaaagccaaattttggcggtgcctttggaaagagagtcggtggatt |
34672616 |
T |
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| Q |
314 |
caacgtcggtaatttcagcaacgagagctgaatgtgaaatgaaagaagggaagattc |
370 |
Q |
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| T |
34672615 |
caatatcgctgatttcgacgacgaaagcagattgtgaaatgaaggaagggaagattc |
34672559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 34790820 - 34790856
Alignment:
| Q |
10 |
acatcatcatccaatgtcttagaagtttccaatccat |
46 |
Q |
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| T |
34790820 |
acatcatcatccaatgtcttagaagtttccaatccat |
34790856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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