View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6363_low_17 (Length: 289)

Name: NF6363_low_17
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6363_low_17
NF6363_low_17
[»] chr3 (2 HSPs)
chr3 (18-275)||(12404192-12404459)
chr3 (88-173)||(3041606-3041691)
[»] chr2 (2 HSPs)
chr2 (86-143)||(42467885-42467942)
chr2 (109-154)||(37494733-37494778)
[»] chr1 (4 HSPs)
chr1 (88-143)||(19808751-19808806)
chr1 (111-154)||(1327620-1327663)
chr1 (92-154)||(4364244-4364306)
chr1 (46-82)||(19808796-19808832)
[»] chr5 (1 HSPs)
chr5 (88-156)||(4483922-4483990)
[»] chr8 (3 HSPs)
chr8 (126-159)||(32817217-32817250)
chr8 (88-142)||(32409870-32409924)
chr8 (49-83)||(44961976-44962010)
[»] chr4 (2 HSPs)
chr4 (88-150)||(5078927-5078989)
chr4 (113-175)||(6986768-6986830)
[»] chr6 (1 HSPs)
chr6 (101-154)||(7712351-7712404)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 12404192 - 12404459
Alignment:
Q  18 acgtagttcaaataagtggttaacacaatttagtggatggataatgaatataacaaggtgtcacagttagcatccactaaacataatttaccacatattt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12404192 acgtagttcaaataagtggttaacacaatttagtggatggataatgaatataacaaggtgtcacagttagtatccactaaacataatttaccacatattt 12404291  T
Q  118 gaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaaatgatacaacattttc----------aatgaatagtgttttctc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||    
T  12404292 gaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaaatgatacaacattttcaatggaatttaatgaatagtgttttctc 12404391  T
Q  208 acatgttacaattttggtgttggtgttgtagaatggtcatcttggtttcctgttatcttgctatgatg 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404392 acatgttacaattttggtgttggtgttgtagaatggtcatcttggtttcctgttatcttgctatgatg 12404459  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 3041606 - 3041691
Alignment:
Q  88 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaa 173  Q
    |||||||||||  ||||| ||||||||| ||||| || ||||||||| || ||||| || |  |||| |||| |||||||||||||    
T  3041606 catccactaaatgtaattaaccacatatgtgaacggtgttaaccatccaagttgttgtcgatttttgttttcaaatttgtgtcaaa 3041691  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 42467885 - 42467942
Alignment:
Q  86 agcatccactaaacataatttaccacatatttgaactgtattaaccatctaaattgtt 143  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  42467885 agcatccactaaacataattaaccacatatttgaactgcattaaccatctgaattgtt 42467942  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 37494778 - 37494733
Alignment:
Q  109 cacatatttgaactgtattaaccatctaaattgttatcaaaatttg 154  Q
    ||||||||||||||| |||||||||| ||||||||||| |||||||    
T  37494778 cacatatttgaactgcattaaccatccaaattgttatcgaaatttg 37494733  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 19808806 - 19808751
Alignment:
Q  88 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgtt 143  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||| ||||||||    
T  19808806 catccactaaacgtaatttaccacatatttgaacggtgttaaccatccaaattgtt 19808751  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 154
Target Start/End: Complemental strand, 1327663 - 1327620
Alignment:
Q  111 catatttgaactgtattaaccatctaaattgttatcaaaatttg 154  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||    
T  1327663 catagttgaactgtgttaaccatctaatttgttatcaaaatttg 1327620  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 4364306 - 4364244
Alignment:
Q  92 cactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttg 154  Q
    |||| ||||||||| || ||||||||||| ||  ||||| |||||||||||| ||||||||||    
T  4364306 cactgaacataattaactacatatttgaattgcgttaactatctaaattgttgtcaaaatttg 4364244  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 19808796 - 19808832
Alignment:
Q  46 tttagtggatggataatgaatataacaaggtgtcaca 82  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  19808796 tttagtggatggttaacgaatataacaaggtgtcaca 19808832  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 4483990 - 4483922
Alignment:
Q  88 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgat 156  Q
    |||||||| |||||||||  ||||| ||||||||||| |||||||| | ||||||| ||||||||||||    
T  4483990 catccactgaacataattagccacacatttgaactgtgttaaccatgtcaattgttgtcaaaatttgat 4483922  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 32817250 - 32817217
Alignment:
Q  126 ttaaccatctaaattgttatcaaaatttgatttc 159  Q
    ||||||||||||||||||||||||||||||||||    
T  32817250 ttaaccatctaaattgttatcaaaatttgatttc 32817217  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 32409870 - 32409924
Alignment:
Q  88 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgt 142  Q
    ||||||||||||||||   | |||||||||||| |||||||||||||||| ||||    
T  32409870 catccactaaacataagcaagcacatatttgaattgtattaaccatctaatttgt 32409924  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 44962010 - 44961976
Alignment:
Q  49 agtggatggataatgaatataacaaggtgtcacag 83  Q
    |||||||||||||||||||||| ||||||||||||    
T  44962010 agtggatggataatgaatataataaggtgtcacag 44961976  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 5078989 - 5078927
Alignment:
Q  88 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaa 150  Q
    |||| ||||||  ||||| |||| |||||||||||| |||||||||| |||||||| ||||||    
T  5078989 catctactaaatgtaattaaccatatatttgaactgcattaaccatccaaattgttgtcaaaa 5078927  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 175
Target Start/End: Original strand, 6986768 - 6986830
Alignment:
Q  113 tatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaaat 175  Q
    ||||||||||| |||||||||||||||| || || ||||||| | || ||||| |||||||||    
T  6986768 tatttgaactgcattaaccatctaaattattttcgaaatttgttgtctaatttatgtcaaaat 6986830  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 154
Target Start/End: Original strand, 7712351 - 7712404
Alignment:
Q  101 taatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttg 154  Q
    ||||| |||||||||||||||| | ||||||||||||| |||| || |||||||    
T  7712351 taattaaccacatatttgaactatgttaaccatctaaactgttgtcgaaatttg 7712404  T

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