View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6363_low_20 (Length: 281)

Name: NF6363_low_20
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6363_low_20
NF6363_low_20
[»] chr2 (9 HSPs)
chr2 (19-271)||(387225-387476)
chr2 (20-243)||(10524154-10524375)
chr2 (21-242)||(39338673-39338892)
chr2 (22-239)||(7874346-7874561)
chr2 (35-239)||(14106332-14106536)
chr2 (30-239)||(5254319-5254522)
chr2 (24-242)||(17116686-17116904)
chr2 (22-198)||(14405253-14405429)
chr2 (132-239)||(7460839-7460947)
[»] chr3 (19 HSPs)
chr3 (21-272)||(43012429-43012678)
chr3 (21-264)||(19176556-19176799)
chr3 (21-271)||(47235752-47235998)
chr3 (21-240)||(20611837-20612054)
chr3 (24-239)||(23328160-23328374)
chr3 (21-242)||(2392313-2392533)
chr3 (21-254)||(9583851-9584080)
chr3 (32-239)||(45163920-45164126)
chr3 (20-271)||(40023350-40023600)
chr3 (19-271)||(53247952-53248200)
chr3 (68-242)||(2394077-2394252)
chr3 (21-214)||(17551011-17551198)
chr3 (32-271)||(34475539-34475770)
chr3 (22-271)||(45398851-45399099)
chr3 (32-198)||(31482949-31483113)
chr3 (132-242)||(30352248-30352356)
chr3 (35-169)||(21342603-21342735)
chr3 (159-264)||(7105031-7105136)
chr3 (238-271)||(46358186-46358219)
[»] chr7 (20 HSPs)
chr7 (21-271)||(3867170-3867415)
chr7 (22-242)||(47325692-47325911)
chr7 (19-242)||(5860095-5860317)
chr7 (21-271)||(38306315-38306560)
chr7 (22-271)||(35745601-35745853)
chr7 (21-242)||(37795043-37795263)
chr7 (21-271)||(44353345-44353591)
chr7 (21-196)||(33435163-33435337)
chr7 (22-271)||(41089524-41089774)
chr7 (22-198)||(34390017-34390192)
chr7 (94-242)||(31971941-31972089)
chr7 (22-242)||(3419462-3419682)
chr7 (21-271)||(10244236-10244480)
chr7 (21-110)||(48161964-48162053)
chr7 (56-243)||(25160900-25161086)
chr7 (22-105)||(6584964-6585046)
chr7 (132-242)||(3419203-3419313)
chr7 (161-264)||(40726293-40726392)
chr7 (62-198)||(8745245-8745384)
chr7 (132-198)||(6585045-6585112)
[»] chr4 (10 HSPs)
chr4 (21-271)||(8255081-8255327)
chr4 (21-271)||(8268499-8268745)
chr4 (21-271)||(30964495-30964737)
chr4 (33-232)||(31050478-31050677)
chr4 (22-241)||(35341148-35341364)
chr4 (132-242)||(8705951-8706061)
chr4 (21-262)||(30167355-30167591)
chr4 (22-271)||(2825838-2826084)
chr4 (21-195)||(4305779-4305951)
chr4 (164-242)||(20464786-20464864)
[»] chr1 (16 HSPs)
chr1 (21-242)||(24449737-24449957)
chr1 (21-271)||(5389204-5389448)
chr1 (21-242)||(46692626-46692846)
chr1 (21-242)||(41920506-41920731)
chr1 (19-242)||(5459213-5459435)
chr1 (21-157)||(24684370-24684505)
chr1 (32-271)||(7857718-7857954)
chr1 (21-198)||(31585610-31585787)
chr1 (22-198)||(27031692-27031866)
chr1 (22-198)||(24658984-24659158)
chr1 (24-271)||(46814246-46814491)
chr1 (21-153)||(30685800-30685931)
chr1 (96-198)||(6764232-6764334)
chr1 (167-242)||(6804739-6804814)
chr1 (176-271)||(30685705-30685797)
chr1 (185-271)||(32882583-32882668)
[»] chr5 (7 HSPs)
chr5 (21-271)||(29087535-29087778)
chr5 (92-263)||(7161803-7161973)
chr5 (21-242)||(18593297-18593517)
chr5 (21-242)||(34378152-34378371)
chr5 (22-198)||(698416-698591)
chr5 (21-99)||(7162267-7162344)
chr5 (56-271)||(18313425-18313636)
[»] chr8 (17 HSPs)
chr8 (21-242)||(24995201-24995422)
chr8 (21-271)||(31207143-31207389)
chr8 (21-242)||(9519553-9519774)
chr8 (21-271)||(20138480-20138726)
chr8 (21-242)||(37986665-37986885)
chr8 (22-214)||(32066130-32066321)
chr8 (28-198)||(12898126-12898294)
chr8 (21-178)||(36630891-36631047)
chr8 (21-242)||(41893209-41893427)
chr8 (22-271)||(15821157-15821405)
chr8 (21-214)||(34388841-34389032)
chr8 (32-198)||(38577640-38577806)
chr8 (54-239)||(35816056-35816238)
chr8 (160-242)||(35821432-35821514)
chr8 (21-242)||(16457282-16457488)
chr8 (68-168)||(22773598-22773699)
chr8 (168-214)||(22773815-22773861)
[»] scaffold0343 (1 HSPs)
scaffold0343 (21-242)||(5759-5980)
[»] chr6 (3 HSPs)
chr6 (21-242)||(3117547-3117767)
chr6 (122-271)||(14663231-14663380)
chr6 (116-242)||(10541980-10542106)
[»] scaffold0068 (1 HSPs)
scaffold0068 (20-271)||(35558-35800)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 387225 - 387476
Alignment:
Q  19 aattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcagg 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  387225 aattctttgactcaagttggtttttgagcttttgtttttgtgctcttttggtggatcggaggtcacgaggttttggaagctgcatgttcattcagtcagg 387324  T
Q  119 tgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatt 218  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||    
T  387325 tgctcttcgataggtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgggggtgaatagtgacgatgggcggtggtgaatt 387424  T
Q  219 ttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||    
T  387425 ttgtgtttacaatgcttg-tttttgtgaaggagtctgttttaggtggtgatgt 387476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 10524154 - 10524375
Alignment:
Q  20 attctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcagg 118  Q
    |||||||||||||||||||||||||||||||   | ||||||||||| ||||  ||||||||||||||||||  || ||||||||| || ||| || |||    
T  10524154 attctttgactcaagttggtttttgggctttg--tgttgtgctctttcggtgt-tcggaggtcgcgaggtttgtgatagctgcatgatccttcggttagg 10524250  T
Q  119 tgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatt 218  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||||||||||||  |||||||||||||| ||     
T  10524251 tgctcttcgatatgtggctcagcttgggtgttggggtttgggagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggtggata 10524350  T
Q  219 ttgtgtttacagtgcttgttttttg 243  Q
      |||||||| ||||||||||||||    
T  10524351 ccgtgtttacggtgcttgttttttg 10524375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 39338892 - 39338673
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||||||||||   | ||||||||||| ||||||||||||||||||||||||  || ||||| ||| || ||| || ||||    
T  39338892 ttctttgactcaagttggtttttgggctttg--tgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggt 39338795  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    |||||||||   ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||  |||||||| ||||| ||      
T  39338794 gctcttcgaattgtgactcagcttgggtgttgaggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatac 39338695  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
    | |||||||||||||||||||||    
T  39338694 t-tgtttacagtgcttgtttttt 39338673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 7874346 - 7874561
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    ||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| |||||| ||||| || | ||||||||  || ||| ||    
T  7874346 tctttgactcaagttggtttttgggcttttg-ttttgtgctcattcggtggatcggaggtcgagaggttgtggaaactacttgttcatttggttaggagc 7874444  T
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgaggg-tgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    | ||||| | ||||||||||||||||||||  |||| |||||||||||||||||| |||||||| |||||||||||||  |||||| ||| ||| ||  |    
T  7874445 ttttcga-atgtggctcagcttgggtgttgaagtcttggagttttattttgagggatgttcttt-ggggtgagtagtgacgatgggtggttgtggatact 7874542  T
Q  221 gtgtttacagtgcttgttt 239  Q
    |||||||||||| ||||||    
T  7874543 gtgtttacagtgtttgttt 7874561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 14106536 - 14106332
Alignment:
Q  35 ttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtg 134  Q
    |||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||| |||||| || ||| |||||| || | | ||| | ||| | |||    
T  14106536 ttggtttttgggtttttgtttttgtgctctttcggtggatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacga-atgtg 14106438  T
Q  135 gctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgc 233  Q
    |||||||||||||||||  ||||  |||||||||||||| |||||||||||||||||||||||||  |||| | ||| ||| ||  |||||||||| ||     
T  14106437 gctcagcttgggtgttgaagtctgagagttttattttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttacaatgt 14106338  T
Q  234 ttgttt 239  Q
    ||||||    
T  14106337 ttgttt 14106332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 5254319 - 5254522
Alignment:
Q  30 tcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgat 129  Q
    ||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||| |||||| |||||||||||||||||||| ||  || ||| |||||     
T  5254319 tcaagttggttttcgggcttttgtttt-gtgctttttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcggtttggagcttttcga- 5254416  T
Q  130 aggtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttac 228  Q
    | ||||||||| ||||||||||  ||||  |||||   |||||| |||||||||||  ||||||||||||  |||||| ||| ||| ||  |||||||||    
T  5254417 atgtggctcagtttgggtgttgaagtctgagagtt---ttttgaggggtgttcttt--gggtgagtagtgacgatgggtggttgtggatactgtgtttac 5254511  T
Q  229 agtgcttgttt 239  Q
    |||| ||||||    
T  5254512 agtgtttgttt 5254522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 17116904 - 17116686
Alignment:
Q  24 tttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgct 122  Q
    ||||||||| |||||||||| ||||||   ||||||||| ||| | | ||| ||||||||||||||||  || | || | || ||  || || |||||||    
T  17116904 tttgactcatgttggtttttaggctttg--ttttgtgctttttcgatagattggaggtcgcgaggtttgtgatatctacttgatccatcggttaggtgct 17116807  T
Q  123 cttcgataggtggctcagcttgggtgttggggtctaggagtttt-attttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttg 221  Q
    |||||  | ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||||||| ||  |||||||||||||| ||   |    
T  17116806 cttcgtaatgtggctcagcttgggtgttggggtctgagagtttttattttgagggtgttctttgtgggtgagtaatgacgatgggcggtggtggataccg 17116707  T
Q  222 tgtttacagtgcttgtttttt 242  Q
    |||||||||||||| ||||||    
T  17116706 tgtttacagtgcttttttttt 17116686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 14405253 - 14405429
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    |||||| |||||||||||||||||||||||| ||||||||||||| |||||||| || |||| | |||| ||||| ||||| |||||||  || ||| ||    
T  14405253 tctttggctcaagttggtttttgggcttttg-ttttgtgctctttcggtggatcagaagtcgagtggttgtggaaactgcacgttcatttggttaggagc 14405351  T
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgaggg-tgttc-tttgggggtgagtagtg 198  Q
    |  |||  | |||||||  |||||||||||  |||| |||||||||||||||||| ||||| |||||||||||||||||    
T  14405352 ttgtcg-catgtggctcgacttgggtgttgaagtctgggagttttattttgagggatgttcttttgggggtgagtagtg 14405429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 239
Target Start/End: Original strand, 7460839 - 7460947
Alignment:
Q  132 gtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacag 230  Q
    ||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||| |||||||||  |||| | ||| ||| || ||||||||||||    
T  7460839 gtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgtttacag 7460938  T
Q  231 tgcttgttt 239  Q
    || ||||||    
T  7460939 tgtttgttt 7460947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 9e-76; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 21 - 272
Target Start/End: Original strand, 43012429 - 43012678
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtg 120  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||| |||||||||||||| |||||| |||||| || ||| ||||||||    
T  43012429 ttctttgactcaagttggtttttgagcttttgtttt-gtgctctttcggtgaatcagaggtcgcgaggttgtggaagttgcatgatcgttcggtcaggtg 43012527  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||| |||| ||       
T  43012528 ctcttcgaaatgtggctcagcttgggtgttggggtctaggagttttaatttgagggtgttctttggaggtgagtagtggcgatggacgggggtggatacc 43012627  T
Q  221 gtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgtc 272  Q
    ||||||||| |||||| |||||||||||||||||||||||| || |||||||    
T  43012628 gtgtttacaatgcttg-tttttgtgaaggagtctgttttagatggtgatgtc 43012678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 19176556 - 19176799
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcatt--cagtcagg 118  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||||||| || ||  | ||||||    
T  19176556 ttctttgactcaagttggtttttgggcttttgattt-gtgctcttttggtggatcggaggtcgcaaggttgtggaagctgcatgatccttttcggtcagg 19176654  T
Q  119 tgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatt 218  Q
    |||||||||  | |||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||||||||  |||||  ||||||| ||     
T  19176655 tgctcttcgtaatgtggctcagcttgggtgtcggggtctgggtgttttattttgagggtgttctttaggggtgagtagtgacgatggatggtggtggata 19176754  T
Q  219 ttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtg 264  Q
     ||||||||| ||||||||||||| |   |||||||||||||||||    
T  19176755 ctgtgtttactgtgcttgtttttt-ttttggagtctgttttaggtg 19176799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 47235752 - 47235998
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||||| ||||||||||||||||||| || ||| |||||||| |||||||| |||||||||||||||  || ||||||||| || ||| || ||||    
T  47235752 ttctttgacttaagttggtttttgggcttt-gtgttt-tgctctttcggtggatcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggt 47235849  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||| | |||| |||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||  ||||| |||||||| ||      
T  47235850 gctcttcgaaatgtggttcagcttgggtgttggggtctgcgagttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggatac 47235949  T
Q  220 tgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
     |||||||||||||||||||||| | |   ||||||||||||||| ||||||    
T  47235950 cgtgtttacagtgcttgttttttttta---agtctgttttaggtggtgatgt 47235998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 20611837 - 20612054
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||||| |||||||||||||||||||   ||  ||||||||| ||||||||||||||||||||||||  || ||||| ||| || ||| || ||||    
T  20611837 ttctttgacttaagttggtttttgggctttgcgtt--gtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggt 20611934  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||| | ||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||  |||||||| ||||| ||      
T  20611935 gctcttcgaaatgtgactcagcttgggtgttggg-tctaggagttttattctgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatac 20612033  T
Q  220 tgtgtttacagtgcttgtttt 240  Q
    |||||||||||||||||||||    
T  20612034 tgtgtttacagtgcttgtttt 20612054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 23328374 - 23328160
Alignment:
Q  24 tttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctc 123  Q
    |||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||| |||||||| | ||||||||| || ||| |||     
T  23328374 tttggctcaagttggtttttgagcttttgtttt-gtgctctttcggtggatcggaggtcgagaggttgtggaagctccttgttcattcggttaggagctt 23328276  T
Q  124 ttcgataggtggctcagcttgggtgttggggtctaggagttttattttgag-ggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgt 222  Q
    ||||| | ||||||||||||||||||||  |||| |||||||||||||||| ||||||||||||||||||||||||  |||||| ||| ||| || ||||    
T  23328275 ttcga-atgtggctcagcttgggtgttgaagtctgggagttttattttgagtggtgttctttgggggtgagtagtgacgatgggtggttgtggatattgt 23328177  T
Q  223 gtttacagtgcttgttt 239  Q
    | |||||||| ||||||    
T  23328176 gcttacagtgtttgttt 23328160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 2392533 - 2392313
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 119  Q
    ||||||| || |||||||||||||||||||   | ||||||||||| |||||||||||||||||||||||| ||  ||||||||| || ||| || |||     
T  2392533 ttctttgtcttaagttggtttttgggctttg--tgttgtgctctttcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttagga 2392436  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
     |||||| | | |||||||||||||||||||||||||||||||||||||||||  |||||| |||| ||||||||||||  |||||||||||||| ||      
T  2392435 tctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggatac 2392336  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
     ||||||||||||||| ||||||    
T  2392335 cgtgtttacagtgcttttttttt 2392313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 9584080 - 9583851
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtg 120  Q
    ||||||| |||||| ||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||| || |||  ||| | || ||| |||||| |    
T  9584080 ttctttgtctcaagatggtttttgggcttttgtttt-gtgatctttcggtggatcggaggttgcgaggttgtg-aagtcgcacgatccttcggtcaggcg 9583983  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    ||||||||   ||||||| |||||||| ||||||||| ||||||||||||||||| |||||||| | |||||||||||  ||| |||||||||| || |     
T  9583982 ctcttcgaattgtggctctgcttgggttttggggtctgggagttttattttgaggatgttcttt-gcggtgagtagtgacgataggcggtggtggatatc 9583884  T
Q  221 gtgtttacagtgcttgttttttgtgaaggagtct 254  Q
    |||||||| ||||||||||||| |||||||||||    
T  9583883 gtgtttacggtgcttgtttttt-tgaaggagtct 9583851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 32 - 239
Target Start/End: Original strand, 45163920 - 45164126
Alignment:
Q  32 aagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgata 130  Q
    |||||||||||||||||||   | ||||||||||| ||||||||||||||| ||| ||||  || ||||||||| || ||| || ||||||||||||| |    
T  45163920 aagttggtttttgggctttg--tgttgtgctctttcggtggatcggaggtcacgaagtttgtgatagctgcatgatccttcggttaggtgctcttcgaaa 45164017  T
Q  131 ggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacag 230  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||| ||||  ||||| |||||  ||||||||||| |||||   |||||||||     
T  45164018 tgtggcttagcttgggtgttggggtctaggagttttattttgagggtgttatttgtaggtgattagtgacgatgggcggtgatgaataccgtgtttacaa 45164117  T
Q  231 tgcttgttt 239  Q
    |||||||||    
T  45164118 tgcttgttt 45164126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 40023600 - 40023350
Alignment:
Q  20 attctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggt 119  Q
    |||||||| || ||||||||||||||||||||||||| ||||||||| |||||||| |||| || |||||| |||||||||||||||||||| || |||     
T  40023600 attctttggcttaagttggtttttgggcttttgtttt-gtgctctttcggtggatcagaggacgggaggttgtggaagctgcatgttcattcggttagga 40023502  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtggtgatgggcggtggtgaatt 218  Q
    ||| ||||| | ||||||||||| ||||||||  |||| ||||||||||||||| ||| ||||||| ||| |||||||||  |||||  ||| ||| ||     
T  40023501 gcttttcga-atgtggctcagctagggtgttgtagtctgggagttttattttgaggggcgttcttttgggatgagtagtgacgatggatggttgtggata 40023403  T
Q  219 ttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
      |||||||||||| ||  ||| ||| |||| |||||| ||||||| ||||||    
T  40023402 ccgtgtttacagtgttttgtttctgttaaggtgtctgtcttaggtggtgatgt 40023350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 53247952 - 53248200
Alignment:
Q  19 aattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcag 117  Q
    |||||||||| |||||||||||||| |  |||||| || ||||||||| ||||||| ||||||||||||||||  || || || ||| || ||| || |     
T  53247952 aattctttgattcaagttggtttttaga-ttttgtgtt-gtgctctttcggtggattggaggtcgcgaggtttgtgatagttgtatgatccttcggttat 53248049  T
Q  118 gtgctcttcgataggtggctcagcttgggtgttggggtctaggagtttt-attttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaa 216  Q
    ||||||||||| | ||||||||| ||||||||||||||||  ||||||| |||||||| |||||||||| ||||||||||||  ||||||||||||||      
T  53248050 gtgctcttcgaaatgtggctcagtttgggtgttggggtctgagagtttttattttgagagtgttctttgtgggtgagtagtgacgatgggcggtggtggt 53248149  T
Q  217 ttttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    |   ||||||||||||||||||||||     ||||||||||||||||| ||||||    
T  53248150 taccgtgtttacagtgcttgtttttt----tggagtctgttttaggtggtgatgt 53248200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 242
Target Start/End: Complemental strand, 2394252 - 2394077
Alignment:
Q  68 ggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagtttt 166  Q
    |||||||||||||||||||||||| ||  ||||||||| || ||| || |||  |||||| | | |||||||||||||||||||||||||||||||||||    
T  2394252 ggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagtttt 2394153  T
Q  167 attttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgtttttt 242  Q
    ||||||  |||||| |||| ||||||||||||  |||||||||||||| ||   ||||||||||||||| ||||||    
T  2394152 attttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttttttttt 2394077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 214
Target Start/End: Original strand, 17551011 - 17551198
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||||||||||   | ||||||||||| | || |||||||||||||||||||  || ||||||||| |  ||     ||||    
T  17551011 ttctttgactcaagttggtttttgggctttg--tgttgtgctctttcgatgcatcggaggtcgcgaggtttgtgatagctgcatgatggtt-----aggt 17551103  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtg 214  Q
    ||||||||| | ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||  |||||||||||  ||||||||||||||    
T  17551104 gctcttcgaaatgtggctcagtttgggtgttggggtctgagagttttattttgagggtgttctttgtcggtgagtagtgacgatgggcggtggtg 17551198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 34475770 - 34475539
Alignment:
Q  32 aagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgata 130  Q
    |||||| ||||||||||||   | ||||||||||| ||||||| ||||||||||||||||  || ||||| ||| || ||| || ||||||||||||| |    
T  34475770 aagttgatttttgggctttg--tgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaa 34475673  T
Q  131 ggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacag 230  Q
     ||| |||||||| ||||||||||| |  |||||||  ||| ||||||||||||| ||||||||||||  |||||||||||||| ||   |||||||||     
T  34475672 tgtgactcagcttaggtgttggggtatgagagtttt--tttaagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacat 34475575  T
Q  231 tgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    ||||||||||||     ||||||||||||||||| ||||||    
T  34475574 tgcttgtttttt-----ggagtctgttttaggtggtgatgt 34475539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 45398851 - 45399099
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    ||||||| | |||||||||||||||||||||||||  |||||||| | |||||||||||||| |||||| |||||||||||||||||||| || | | ||    
T  45398851 tctttgatttaagttggtttttgggcttttgtttta-tgctctttcgatggatcggaggtcgagaggttgtggaagctgcatgttcattcggttatgagc 45398949  T
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttg-agggtgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    | ||||| | ||||| || ||| |||||||  || | |||||| |||||||  |||||||| ||||||||||||||||  |||||  | | ||| || ||    
T  45398950 ttttcga-atgtggcgcaacttaggtgttgaagtttgggagttctattttgtggggtgttcgttgggggtgagtagtgacgatggatgattgtggatatt 45399048  T
Q  221 gtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    |||||||||||| ||  ||| ||| |||| ||| || ||||||| ||||||    
T  45399049 gtgtttacagtgttttgtttctgttaaggtgtccgtcttaggtggtgatgt 45399099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 31482949 - 31483113
Alignment:
Q  32 aagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgata 130  Q
    |||||| ||||||||||||   | ||||||||||| ||||||| ||||||||||||||||  || ||||||||| || ||| || ||||||||||||| |    
T  31482949 aagttgatttttgggctttg--tgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaa 31483046  T
Q  131 ggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtg 198  Q
     |||||||||||| ||||||||||| |  ||||||| |||| ||||||||||||| |||| |||||||    
T  31483047 tgtggctcagcttaggtgttggggtttgagagtttt-ttttaagggtgttctttgtgggttagtagtg 31483113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 30352356 - 30352248
Alignment:
Q  132 gtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagt 231  Q
    |||||||||||||||||||||||||| |||||||| |||  ||||||||||||| || |||||||||  |||||| ||||||| ||   |||||||||||    
T  30352356 gtggctcagcttgggtgttggggtctcggagtttttttt--agggtgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgtttacagt 30352259  T
Q  232 gcttgtttttt 242  Q
     ||||||||||    
T  30352258 acttgtttttt 30352248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 169
Target Start/End: Original strand, 21342603 - 21342735
Alignment:
Q  35 ttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtg 134  Q
    ||||||||| |||||||||||| ||||||||| | |||||| ||||||| |||||| |||||||||| ||||||||| || ||  ||| ||||| | |||    
T  21342603 ttggtttttaggcttttgtttt-gtgctctttcgatggatcagaggtcgagaggttgtggaagctgcttgttcattcggttagaagcttttcga-atgtg 21342700  T
Q  135 gctcagcttgggtgttggggtctaggagttttatt 169  Q
    ||||  |||||||||||  ||||  ||||||||||    
T  21342701 gctcgacttgggtgttgaagtctgagagttttatt 21342735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 7105031 - 7105136
Alignment:
Q  159 ggagttttattttgaggg-tgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgtt 257  Q
    ||||||||||||| |||| ||||  || |||||||||||||  |||||| ||||||| ||  ||| |||| |||||||||||| | ||||| ||||||||    
T  7105031 ggagttttattttaaggggtgtttctttggggtgagtagtgacgatgggtggtggtggatactgtttttatagtgcttgttttct-tgaagaagtctgtt 7105129  T
Q  258 ttaggtg 264  Q
    |||||||    
T  7105130 ttaggtg 7105136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 46358219 - 46358186
Alignment:
Q  238 tttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    |||| |||||||||||||||||||||||||||||    
T  46358219 ttttcgtgaaggagtctgttttaggtgatgatgt 46358186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 3867170 - 3867415
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtg 120  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||  |||||||| |||||||||||||| ||||| ||||||| || ||  ||||||||    
T  3867170 ttctttgactcaagttggtttttgggcttttgcttt-gtgctcttgcggtggatcagaggtcgcgaggttatggaaactgcatgatcctttggtcaggtg 3867268  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    |||||||||| ||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||||||||  ||||| |||||||| || |     
T  3867269 ctcttcgatatgtggctcagcttgggtgttggagtatggaagttttattttgagggtgttctttgggggtgagtagtgacgatggacggtggtggatatc 3867368  T
Q  221 gtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    ||||||||||   ||| ||||||||||||||| |||||| |||| ||||||    
T  3867369 gtgtttacag---ttg-tttttgtgaaggagtttgttttgggtggtgatgt 3867415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 47325911 - 47325692
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtg 120  Q
    |||||||||||||||||||||||||||||   |  |||||||||| | ||||||||||||||||||||||  || ||||| ||| || ||| || |||||    
T  47325911 tctttgactcaagttggtttttgggctttg--tgctgtgctctttcgatggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtg 47325814  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||  |||||||| || || ||  |    
T  47325813 ctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatgatggatact 47325714  T
Q  221 gtgtttacagtgcttgtttttt 242  Q
    ||||||||||||||||||||||    
T  47325713 gtgtttacagtgcttgtttttt 47325692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 5860317 - 5860095
Alignment:
Q  19 aattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcag 117  Q
    ||||||||||| ||||||||||||||||||||   | ||||||||||| ||||| ||||||||||||||||||  || ||||||||| || |||||| ||    
T  5860317 aattctttgacgcaagttggtttttgggctttg--tgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttag 5860220  T
Q  118 gtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaat 217  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || |||||||||  |||||||  ||||||||    
T  5860219 gtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttattttcagggtgttctttgtggatgagtagtgacgatgggcaatggtgaat 5860120  T
Q  218 tttgtgtttacagtgcttgtttttt 242  Q
       ||||| | ||||||||||||||    
T  5860119 accgtgttaatagtgcttgtttttt 5860095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 38306315 - 38306560
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||||||||||   | ||||||||||| | ||| ||||||||||||||||||  || ||||||||| || ||| || | ||    
T  38306315 ttctttgactcaagttggtttttgggctttg--tgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaagt 38306412  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||  |||||||||||  |||||| ||||||| || |    
T  38306413 gctcttcgatatgtggctcagcttgggtgttggggtctgtgagttttattttgagggtgttctttgtaggtgagtagtgacgatgggtggtggtggatat 38306512  T
Q  220 tgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
     |||| | |||| |||||||||||    ||||| ||||||||||| ||||||    
T  38306513 cgtgtctgcagttcttgttttttg----ggagtttgttttaggtggtgatgt 38306560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 35745853 - 35745601
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| | |||||| |||||||||||||||||||| || ||| ||    
T  35745853 tctttggctcaagttggtttttgggcttttgtttttgtgctctttcggtggattggaggtggagaggttgtggaagctgcatgttcattcggttaggagc 35745754  T
Q  122 tcttcgata---ggtggctcagcttgggtgttggggtctaggagttttattttgag-ggtgttctttgggggtgagtagtggtgatgggcggtggtgaat 217  Q
    | |||||||    ||||||||||||||||||||  ||||    ||||||||||||| ||||||||||||||||||||||||  |||||| || |||| ||    
T  35745753 ttttcgatatatagtggctcagcttgggtgttgaagtctgactgttttattttgagaggtgttctttgggggtgagtagtgacgatgggtgggggtggat 35745654  T
Q  218 tttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
     |||||||||  ||| ||| ||| ||| |||| |||||| ||||||| ||||||    
T  35745653 gttgtgtttagtgtgtttg-tttctgttaaggtgtctgtcttaggtggtgatgt 35745601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 37795043 - 37795263
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||| |||||||||||||||||||||   | ||||||||||| ||||| ||||||||||||||||||  || ||||||||| || ||| || ||||    
T  37795043 ttctttgagtcaagttggtttttgggctttg--tgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggt 37795140  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    |||||||||   |||||||||||||||||||||||| |  |||||||||||||||||||||||||| || | ||||||  ||||||||||||||| ||      
T  37795141 gctcttcgaactgtggctcagcttgggtgttggggtttgagagttttattttgagggtgttctttgtggttaagtagtaatgatgggcggtggtggatac 37795240  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
     ||||||||||||||| ||||||    
T  37795241 cgtgtttacagtgcttttttttt 37795263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 44353591 - 44353345
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||||| | |||||||||||||||||   | ||||||||||| ||||||||||||||||||||||||  || ||||||||| || ||| || ||||    
T  44353591 ttctttgacttatgttggtttttgggctttg--tgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggt 44353494  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagtttta-ttttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatt 218  Q
    ||||||||| | ||| | | |||||||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||  ||||| |||||||| ||     
T  44353493 gctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggata 44353394  T
Q  219 ttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
      |||||||||||||||| |||||     ||||||||||||||||| ||||||    
T  44353393 ccgtgtttacagtgcttgattttt----tggagtctgttttaggtggtgatgt 44353345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 33435163 - 33435337
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtg 120  Q
    ||||||| |||||||| |||| ||||| |||||||| ||||||||| ||||||||||||||||||||||| || ||||| |||| || ||| ||||||||    
T  33435163 ttctttgtctcaagttcgtttgtgggcatttgtttt-gtgctctttcggtggatcggaggtcgcgaggttgtgaaagctacatgatccttcggtcaggtg 33435261  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtag 196  Q
    ||||||||   |||||||||||||| ||||| |||||  ||||||| |||||||||||||||||||||||||||||    
T  33435262 ctcttcgaattgtggctcagcttggttgttgaggtctgagagttttcttttgagggtgttctttgggggtgagtag 33435337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 41089774 - 41089524
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    ||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||||| |  |||  | ||||||    
T  41089774 tctttgactcaagttggtttttgagcttttgtttt-gtgatctttcggtggatcggaggtcgcgaggttgtggaagctgcatgattcttcgttgaggtgc 41089676  T
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttg 221  Q
    |||||||   || |||||   |||||||| |||||| ||||||||||||||||||||||||||| |||| | |||||   ||||||||||||  ||  ||    
T  41089675 tcttcgaagtgtagctcaagatgggtgttagggtctgggagttttattttgagggtgttctttgcgggt-aatagtgacaatgggcggtggtagatactg 41089577  T
Q  222 tgtttacagtgcttg---ttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    ||||||||   ||||   |||||| |   ||||||||||||||||||||||||    
T  41089576 tgtttacatgacttgttttttttttttttggagtctgttttaggtgatgatgt 41089524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 34390017 - 34390192
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    |||||| || |||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||| ||||||||||||||||||||  | ||| ||    
T  34390017 tctttggcttaagttggtttttgggcttttatttt-gtgctctttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcgattaggagc 34390115  T
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtg 198  Q
    | ||| | | |||||||| |||||||||||  |||| ||||||||||||||| ||||||||||||||| |||||||||    
T  34390116 ttttc-aaatgtggctcaacttgggtgttgtagtctgggagttttattttgaggggtgttctttggggatgagtagtg 34390192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 31972089 - 31971941
Alignment:
Q  94 gaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgag 193  Q
    |||| |||||| || ||| || ||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||    
T  31972089 gaaggtgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttggagggtgttctttgtgggtgag 31971990  T
Q  194 tagtggtgatgggcggtggtgaattttgtgtttacagtgcttgtttttt 242  Q
    |||||  |||||||||||||  ||   ||||||||||||||||||||||    
T  31971989 tagtgacgatgggcggtggttgataccgtgtttacagtgcttgtttttt 31971941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 3419682 - 3419462
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtg 120  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||| | ||||||  || |||||| || || ||| || |||||    
T  3419682 tctttgactcaagttggtttttgggcttt-gtttctgtgctctttcggtggatcagaggtcacaaggtttgtgatagctgcttgatccttcggttaggtg 3419584  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    | ||||||   |||||| | ||||||||||||||| | ||||||||||||| ||||||||||||| | ||||||||||  ||||  |||||||| || |     
T  3419583 cgcttcgaattgtggcttaacttgggtgttggggtttgggagttttattttaagggtgttctttgtgagtgagtagtgacgatgaacggtggtggatatc 3419484  T
Q  221 gtgtttacagtgcttgtttttt 242  Q
     |||||||| || |||||||||    
T  3419483 atgtttacaatgnttgtttttt 3419462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 10244236 - 10244480
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||||||||||| |||||||| ||||   | |||||||||||  |||| ||||||||||||||||||  || || |||||| || ||| || ||||    
T  10244236 ttctttgactcaagttagtttttggcctttg--tgttgtgctctttcagtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggt 10244333  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    |||||| ||   ||||||||||||||||||| |||||| ||| ||||| || ||||||| |||||| ||||||||||||  |||||||| ||||| ||      
T  10244334 gctctttgaattgtggctcagcttgggtgtttgggtctgggatttttagttggagggtggtctttgtgggtgagtagtgacgatgggcgatggtggatac 10244433  T
Q  220 tgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
      ||||||| |||||| |||||||     |||| ||||||||||| ||||||    
T  10244434 catgtttacggtgcttattttttg-----gagtttgttttaggtggtgatgt 10244480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 48162053 - 48161964
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcatt 110  Q
    ||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||| ||||||||    
T  48162053 ttctttggctcaaattgatttttggacttttgtttttgtgctcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcatt 48161964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 25160900 - 25161086
Alignment:
Q  56 ttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttgggg 154  Q
    ||||||||||| ||||||| ||||||| | ||||||  || |||||  || || |||||| |||||||||| || | |||||||| ||| | ||||||||    
T  25160900 ttgtgctctttcggtggattggaggtctcaaggtttgtgatagctgtgtgatccttcagttaggtgctcttggaaatgtggctcaacttagatgttgggg 25160999  T
Q  155 tctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttg 243  Q
    |||  |||||||  ||| | ||||||||||| ||||||||||||  |||||||| ||||| ||  | |||||||| |||||||||||||    
T  25161000 tctgagagtttt--tttaaaggtgttctttgtgggtgagtagtgacgatgggcgttggtggatactatgtttacattgcttgttttttg 25161086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 6584964 - 6585046
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgt 105  Q
    |||||| || ||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| ||||| ||||||||    
T  6584964 tctttggcttaagttggtttttgggcttttgtttt-gtgctctttcggtggatcggaggttgagaggttgtggaacctgcatgt 6585046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 3419313 - 3419203
Alignment:
Q  132 gtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagt 231  Q
    |||||| | ||||||||||||||| | ||||||||||||| |||||||| |||| | |||||||||| |||||  |||||||| || |  |||||||| |    
T  3419313 gtggcttaacttgggtgttggggtttgggagttttattttaagggtgttttttgtgagtgagtagtgatgatgaacggtggtggatatcatgtttacaat 3419214  T
Q  232 gcttgtttttt 242  Q
    |||||||||||    
T  3419213 gcttgtttttt 3419203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 40726392 - 40726293
Alignment:
Q  161 agttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgtttta 260  Q
    |||||||||||||||||||||||| | ||||||||||| |||| |||||||||| ||   |||||||| ||||||| ||||| |   |||||||||||||    
T  40726392 agttttattttgagggtgttcttt-gtggtgagtagtgatgataggcggtggtggataccgtgtttaccgtgcttgattttttt---ggagtctgtttta 40726297  T

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Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 198
Target Start/End: Original strand, 8745245 - 8745384
Alignment:
Q  62 tcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctagga 161  Q
    ||||| |||||||||||||||| |||||| ||||||||||||| || |||||  ||| ||| ||||  | |||||||||||| ||||||   | || |||    
T  8745245 tctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcg-gatgtggctcagctttggtgttcaagactggga 8745343  T
Q  162 gttttattttgaggg----tgttctttgggggtgagtagtg 198  Q
    |||| ||||||||||    | ||||||||||||||||||||    
T  8745344 gtttaattttgaggggtgtttttctttgggggtgagtagtg 8745384  T

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Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 6585045 - 6585112
Alignment:
Q  132 gtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtg 198  Q
    ||||||||||||||||||||  |||| ||||||||||||||| ||||| | ||||| |||||||||||    
T  6585045 gtggctcagcttgggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtg 6585112  T

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Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 8255081 - 8255327
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||  || |||||| || ||  ||||| ||||    
T  8255081 ttctttgactcaagttggtttttgggctttg--ttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggt 8255178  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||  | ||||||||||||||||||| ||||||  |||||||||||||||||||||||||| ||||||||||||  ||||||  |||||| ||      
T  8255179 gctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgggatgtggtggatac 8255278  T
Q  220 tgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    ||||||||||||||||||||| | |   ||||||||||||||||| ||||||    
T  8255279 tgtgtttacagtgcttgttttattt---ggagtctgttttaggtggtgatgt 8255327  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 8268499 - 8268745
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||||||||  || |||||| || ||  ||||| ||||    
T  8268499 ttctttgactcaagttggtttttgggctttg--ttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggt 8268596  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||  | ||||||||||||||||||| ||||||  |||||||||||||||||||||||||| ||||||||||||  ||||||  |||||| ||      
T  8268597 gctcttcgtaatgtggctcagcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgggatgtggtggatac 8268696  T
Q  220 tgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    ||||||||||||||||||||| | |   ||||||||||||||||| ||||||    
T  8268697 tgtgtttacagtgcttgttttattt---ggagtctgttttaggtggtgatgt 8268745  T

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Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 30964495 - 30964737
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||||||||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||||  || ||||||||| |||||| || ||||    
T  30964495 ttctttgactcaagttggtttttggg-ttttgtgtt-gtgctcttttggtggttcggaggtcgcgaggtttgtgatagctgcatgatcattcggttaggt 30964592  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||| | ||||| | ||||||||| |     || ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |    
T  30964593 gctcttcgaaatgtggccctgcttgggtggta----ctgggagttttattttgagggtgttctttgtgggtgagtagtgatgatgggcggtggtgaatat 30964688  T
Q  220 tgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
     || |||||||||| || ||||| |   ||||||||||||||||| ||||||    
T  30964689 cgtatttacagtgcgtgattttttt---ggagtctgttttaggtggtgatgt 30964737  T

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Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 31050677 - 31050478
Alignment:
Q  33 agttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgatagg 132  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||| || ||| ||| ||||||  |    
T  31050677 agttggtttttgggcttttgtttttgtgctctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttaggagcttttcgat-tg 31050579  T
Q  133 tggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagt 231  Q
    ||||| |||||||||||||  |||| |  |||||||||||| |||||||| ||||||||||||||||  |||||  | ||||| || |||||||||||||    
T  31050578 tggctaagcttgggtgttgaagtctggctgttttattttgaggggtgttccttgggggtgagtagtgacgatggatgatggtggatgttgtgtttacagt 31050479  T

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Target: chr4; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 35341364 - 35341148
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||||| | | ||    
T  35341364 tctttggctcaagttggtttttggccttttgtttt-gtgctctttcggtggatcggagttcgagaggttgtggaagctgcatgttcattcagttatgagc 35341266  T
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    | ||||| | ||||||||| || |||||||  || | ||||||||||||||| ||||||||| | |||||||||||||  |||||| ||| | | ||  |    
T  35341265 ttttcga-atgtggctcag-tttggtgttgaagtttgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggtggttgcggatact 35341169  T
Q  221 gtgtttacagtgcttgttttt 241  Q
    |||||||||||| ||||||||    
T  35341168 gtgtttacagtgtttgttttt 35341148  T

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Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 132 - 242
Target Start/End: Complemental strand, 8706061 - 8705951
Alignment:
Q  132 gtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagt 231  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||  ||||||| |||||| ||  ||||||||||||    
T  8706061 gtggctcagcttgggtgttggggtctaagagttttattttgagggtgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttacagt 8705962  T
Q  232 gcttgtttttt 242  Q
    |||||||||||    
T  8705961 gcttgtttttt 8705951  T

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Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 262
Target Start/End: Complemental strand, 30167591 - 30167355
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||| |||||||| |||   | ||||||||||| |||||  |||||||||||||||||  || |||||||||  | ||| || | |     
T  30167591 ttctttgactcaagttgatttttggggtttg--tgttgtgctctttcggtggtccggaggtcgcgaggtttatgatagctgcatgacccttcggttaagc 30167494  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||| | ||||| || ||||||||||||||| | ||||||||||||||||||||||||||| |||||||| |||  | | |||||||||| ||      
T  30167493 gctcttcgaaatgtggcccaacttgggtgttggggtatgggagttttattttgagggtgttctttgtgggtgagtggtgacg-ttggcggtggtggatac 30167395  T
Q  220 tgtgtttacagtgcttgttttttgtgaaggagtctgttttagg 262  Q
     |||||||||||||||| ||||| |   |||||||||||||||    
T  30167394 cgtgtttacagtgcttgattttttt---ggagtctgttttagg 30167355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 2825838 - 2826084
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    |||||| |||||  |||||||||||||||| |||| || |||||| |||||||||||||||  |||||| |||||||||||||||||||| || ||| ||    
T  2825838 tctttggctcaatgtggtttttgggcttttatttt-gtactctttcggtggatcggaggtctagaggttgtggaagctgcatgttcattcggttaggagc 2825936  T
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    | ||||| |||||| |||| ||||||||||  || | ||||||||||||||| ||||||||| | |||||||||||||  ||||||  || ||| ||  |    
T  2825937 ttttcga-aggtggttcagtttgggtgttgaagtttgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggacgttgtggatact 2826034  T
Q  221 gtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    | |||||||| | ||| ||| ||| |||| || ||| ||||||||||||||    
T  2826035 gcgtttacagggtttg-tttctgttaaggtgtttgtcttaggtgatgatgt 2826084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 4305779 - 4305951
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||| ||||||||||||||| ||||||   | |||||||||||||||||  | |||||||| ||||||  || | ||||||| || ||| || ||||    
T  4305779 ttctttgtctcaagttggtttttaggctttg--tgttgtgctcttttggtggtccagaggtcgcaaggtttgtgataactgcatgatccttcggtgaggt 4305876  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagta 195  Q
    ||||||||| | |||||||| ||||||| || |||| | ||||||||||||| |||||| |||||| |||||||||    
T  4305877 gctcttcga-atgtggctcaacttgggtatttgggtttgggagttttattttcagggtgatctttgtgggtgagta 4305951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 20464786 - 20464864
Alignment:
Q  164 tttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgtttttt 242  Q
    ||||||||||||||||| |||||||||||||||||  |||||||||||||| ||   |||||||||| | |||||||||    
T  20464786 tttattttgagggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgtttttt 20464864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 24449957 - 24449737
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||| || ||||||||||||||| |||   | ||||||||||||||||||||||||||||||||||||  || || |||||| || ||| || ||||    
T  24449957 ttctttgtcttaagttggtttttgggatttg--tgttgtgctcttttggtggatcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggt 24449860  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||  |||||||||||||| ||      
T  24449859 gctcttcgaaatgcggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtggatac 24449760  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
     ||||||||||||||||||||||    
T  24449759 cgtgtttacagtgcttgtttttt 24449737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 5389448 - 5389204
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 119  Q
    |||||||||||||||| |||||||||||||   | ||||||||||| ||||| |||||||||||||||||| ||  |||| |||| || ||| || | ||    
T  5389448 ttctttgactcaagtttgtttttgggctttg--tgttgtgctctttcggtggttcggaggtcgcgaggtttgtgttagctacatggtccttcggttaagt 5389351  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||   ||||||||||  |||||||||||||| ||      
T  5389350 gctcttcgatatgtggctcagcttgggtgttggggtctgggagttttattttgagggtgttc-ttgtaagtgagtagtgacgatgggcggtggtggatac 5389252  T
Q  220 tgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
     |||||||| ||||||||||||||    ||||| ||||||||||| ||||||    
T  5389251 cgtgtttacggtgcttgttttttg----ggagtttgttttaggtggtgatgt 5389204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 46692846 - 46692626
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||| ||||||||||||||||||||||   | ||||||||||| ||||| ||||||||||||||||||  || ||||||||  || | | || | ||    
T  46692846 ttctttggctcaagttggtttttgggctttg--tgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcattatcctccggttaagt 46692749  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||| | |||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||||||||||||  |||||||||||||  || |    
T  46692748 gctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgatat 46692649  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
     ||||||||||||||||||||||    
T  46692648 cgtgtttacagtgcttgtttttt 46692626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 41920506 - 41920731
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcat-----tcagt 114  Q
    |||||||||||||||||| |||||||||||   | ||||||||||| ||||||||||||||||||||||||  || ||||||||| || |     |||||    
T  41920506 ttctttgactcaagttggattttgggctttg--tgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatcctaaccttcagt 41920603  T
Q  115 caggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtg 214  Q
     |||||||||||   | |||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||  ||| ||||||||||    
T  41920604 taggtgctcttcatcatgtggctcagcttgggtgttggggtcttggagttttattttgagggtgttttttgtgggtgagtagtgacgataggcggtggtg 41920703  T
Q  215 aattttgtgtttacagtgcttgtttttt 242  Q
    |||   ||||||||| ||||||||||||    
T  41920704 aataccgtgtttacattgcttgtttttt 41920731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 5459213 - 5459435
Alignment:
Q  19 aattctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcag 117  Q
    |||| ||||| |||||||| ||||||||||||   | |||||||||||  |||| |||||||| |||||||||  || ||||||||| || |||||| ||    
T  5459213 aattatttgattcaagttgatttttgggctttg--tgttgtgctctttcagtggttcggaggttgcgaggtttgtgatagctgcatgatccttcagttag 5459310  T
Q  118 gtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaat 217  Q
    |||||||| || | |||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||  |||||||||||||| ||    
T  5459311 gtgctctttgaaatgtggctcagcttgggtgttggggtctggaagttttattttgatggtgttctttgtgggtgagtagtgacgatgggcggtggtggat 5459410  T
Q  218 tttgtgtttacagtgcttgtttttt 242  Q
       |||||||||||| |||||||||    
T  5459411 accgtgtttacagtgattgtttttt 5459435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 24684505 - 24684370
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtg 120  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||| || ||| ||||||||    
T  24684505 ttctttgactctagttggtttttgggcttttgtttt-gtgctctttcggtggatcggaggtcgcgaggttgtggaagatgcatgatccttcggtcaggtg 24684407  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtct 157  Q
    |||||||| | |||||||| ||||| ||| |||||||    
T  24684406 ctcttcgaaatgtggctcaacttggatgtcggggtct 24684370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 271
Target Start/End: Original strand, 7857718 - 7857954
Alignment:
Q  32 aagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgatag 131  Q
    |||||||||||||| |||||||||| ||||||||| |||||||||| ||||| |||||| |||||||||| ||| ||||| || ||| ||| || || |     
T  7857718 aagttggtttttggccttttgtttt-gtgctctttcggtggatcggtggtcgagaggttgtggaagctgcttgtccattcggttaggagct-tttgaaat 7857815  T
Q  132 gtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacag 230  Q
    ||||||||| ||||||||||  |||| ||||||||||||||| ||||||||| |||||||||||||||| |||||| ||| ||| |    ||||||||||    
T  7857816 gtggctcagtttgggtgttgaagtctgggagttttattttgaggggtgttctatgggggtgagtagtggcgatgggtggttgtgga--ccgtgtttacag 7857913  T
Q  231 tgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    || ||  ||| ||| |||| ||| || ||||||||||||||    
T  7857914 tgttttgtttctgttaaggtgtccgtcttaggtgatgatgt 7857954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 31585787 - 31585610
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||||||||||   | ||||||| ||| ||||| ||||||||||||||||||  || ||||| ||| || ||  || ||||    
T  31585787 ttctttgactcaagttggtttttgggctttg--tgttgtgctatttcggtgggtcggaggtcgcgaggtttgtgatagctgtatgatcctttggttaggt 31585690  T
Q  120 gctcttcgataggtggctcagcttgggtgttgggg-tctaggagttttattttgagggtgttctttgggggtgagtagtg 198  Q
    ||||||||| | |||||| |||||||||||||||| |||  |||||||||||||||||||||||||| ||||||||||||    
T  31585689 gctcttcgaaatgtggctaagcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgagtagtg 31585610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 27031866 - 27031692
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    |||||| |||||||||||||| ||| ||||||||| ||||||||| |||||||||||||| | |||||| |||||||||||||||||||| || | | ||    
T  27031866 tctttggctcaagttggttttagggattttgtttt-gtgctctttcggtggatcggaggttgagaggttgtggaagctgcatgttcattcggttaagagc 27031768  T
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtg 198  Q
    | ||||| | ||||||||| |||| |||||  |||| ||||||||||||||| ||||||||| | |||||||||||||    
T  27031767 ttttcga-atgtggctcagtttggatgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtg 27031692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 24658984 - 24659158
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    |||||| || ||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||| |||||||  ||||||||||| || ||  ||    
T  24658984 tctttggctgaagttggtttttgggctttggtttt-gtgctctttcggtggatcggaggtcgagaggttgtggaagcatcatgttcattcggttagaagc 24659082  T
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtg 198  Q
    | ||||| | |||||||||| |||| |||   |||| ||||||||||||||| ||||||| |||||||||||||||||    
T  24659083 ttttcga-atgtggctcagcctgggagtt-aagtctgggagttttattttgaggggtgttatttgggggtgagtagtg 24659158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 46814491 - 46814246
Alignment:
Q  24 tttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctc 123  Q
    |||| ||||||||||||||| |||||||||||| ||||||||| ||||||||||| |||| ||||||   ||||||||| ||||||||  | ||| |||     
T  46814491 tttggctcaagttggttttttggcttttgtttt-gtgctctttcggtggatcggatgtcgagaggttgcagaagctgcaagttcattcgattaggagctt 46814393  T
Q  124 ttcgataggtggctcagcttgggtgttggggtctaggagttttattttga-gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgt 222  Q
    ||||| | ||||||| || |||||||||  || | |||||||||||| || ||||||| ||||| |||||||||||  ||||| |||| ||| ||  |||    
T  46814392 ttcga-atgtggctcggcgtgggtgttgaagtatgggagttttatttcgaggggtgttatttggaggtgagtagtgacgatggacggttgtggatactgt 46814294  T
Q  223 gtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    |||||||| | ||| ||| ||| |||| |||||| ||||||| ||||||    
T  46814293 gtttacagggtttg-tttctgttaaggtgtctgtcttaggtggtgatgt 46814246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 30685931 - 30685800
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttt-tggaagctgcatgttcattcagtcaggt 119  Q
    |||||||||||||||||| |||||||||||   | ||||||||||| ||||| |||||||||||||||||| ||  ||||||||| || ||  || ||||    
T  30685931 ttctttgactcaagttggcttttgggctttg--tgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatcctttggttaggt 30685834  T
Q  120 gctcttcgataggtggctcagcttgggtgttggg 153  Q
    |||| | |||| ||||||||||||||||||||||    
T  30685833 gctccttgatatgtggctcagcttgggtgttggg 30685800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 6764334 - 6764232
Alignment:
Q  96 agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagta 195  Q
    ||||||||| || ||| || ||||||||||||| | |||||||| ||||| |  |||||||| ||||||||||||| ||| ||||||||| |||||||||    
T  6764334 agctgcatggtccttcggttaggtgctcttcgaaatgtggctcaacttggatactggggtctgggagttttattttcaggatgttctttgtgggtgagta 6764235  T
Q  196 gtg 198  Q
    |||    
T  6764234 gtg 6764232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 242
Target Start/End: Original strand, 6804739 - 6804814
Alignment:
Q  167 attttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgtttttt 242  Q
    ||||| ||||||||||||| ||||||| ||||  |||||||||||||| ||  ||| |||||||||||||||||||    
T  6804739 attttcagggtgttctttgtgggtgaggagtgacgatgggcggtggtggatactgtatttacagtgcttgtttttt 6804814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 30685797 - 30685705
Alignment:
Q  176 gtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    |||||||||| ||||| ||||||  |||||||||||||| ||   ||||||||| ||||||||||   ||  ||||||||||||||||| ||||||    
T  30685797 gtgttctttgtgggtgtgtagtgaagatgggcggtggtggataccgtgtttacattgcttgtttt---tgttggagtctgttttaggtggtgatgt 30685705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 32882583 - 32882668
Alignment:
Q  185 gggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    ||||||||||||||  |||||| |||| || || | |||||||||||||| | |||| ||||||||||| |||||||| | ||||||    
T  32882583 gggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcg-ttttcgtgaaggagtcagttttaggcggtgatgt 32882668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 29087535 - 29087778
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtg 120  Q
    |||||||| |||| ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| ||| |||| |||| || ||  ||||||||    
T  29087535 ttctttgaatcaaattggtttctgggcttttgtttt-gtgctctttcggtggatcggaggtcgcgaggttatggtagctccatgatcctttggtcaggtg 29087633  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    ||||||| || |||||||| ||| | ||||||||||| |||| |||||||||||||| |||||| |||||||||||||  |||||||||||||||||       
T  29087634 ctcttcg-tatgtggctcaacttagatgttggggtctgggagctttattttgagggt-ttctttaggggtgagtagtgacgatgggcggtggtgaatacc 29087731  T
Q  221 gtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    ||||||||||||||||||||||     ||||||||||||||||| ||||||    
T  29087732 gtgtttacagtgcttgtttttt----tggagtctgttttaggtgctgatgt 29087778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 92 - 263
Target Start/End: Complemental strand, 7161973 - 7161803
Alignment:
Q  92 tggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtg 191  Q
    ||||||||||||| || ||  |||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  7161973 tggaagctgcatgatcctttggtcaggtgttcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtg 7161874  T
Q  192 agtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggt 263  Q
    |||||||  | |||| ||||||| |  | ||||||||||||||||| |||||||||||||||||||||||||    
T  7161873 agtagtgacgttgggtggtggtggaaatcgtgtttacagtgcttgt-ttttgtgaaggagtctgttttaggt 7161803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 18593297 - 18593517
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||||||||||||||||||||||||    | ||||||||||| ||||| |||||||||||||| |||  || || |||||| || ||| || ||||    
T  18593297 ttctttgactcaagttggtttttgggcttag--tgttgtgctctttcggtggttcggaggtcgcgagatttgtgataggtgcatgatccttcggttaggt 18593394  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    | ||||||| | |||||||| ||||||||||||||||| |||||||||||| |||| ||||||||| ||||||||||||  |||||||||||||| ||      
T  18593395 gttcttcgaaatgtggctcaacttgggtgttggggtctgggagttttatttggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggatac 18593494  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
     ||||||||||||||||||||||    
T  18593495 cgtgtttacagtgcttgtttttt 18593517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 34378152 - 34378371
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||| ||||||||||||||||||||   ||||||||||||| |||||| |||||||||||||||||  || || ||  || || ||| || || |    
T  34378152 ttctttgacacaagttggtttttgggctttg--ttttgtgctctttcggtggaccggaggtcgcgaggtttgtgatagttgtttgatccttcggttagat 34378249  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||  | |||||||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||||||  ||||| |||||||| ||      
T  34378250 gctcttcgtaatgtggctcagcttgggtgttggggtttgagagttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggatac 34378349  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
     ||||||||| ||||||||||||    
T  34378350 cgtgtttaca-tgcttgtttttt 34378371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 698416 - 698591
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtg 120  Q
    |||||||||||||||||||||||||||||   | |||| ||||||  |||| || ||||| |||||||||  || ||||||||  || ||| || |||||    
T  698416 tctttgactcaagttggtttttgggctttg--tgttgtactctttctgtggttcagaggttgcgaggtttgtgatagctgcataatccttcggttaggtg 698513  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtg 198  Q
    ||||| || | ||||||||||||||||||||||||||  ||||||||||| |||||||||||||| ||||||||||||    
T  698514 ctctttgaaatgtggctcagcttgggtgttggggtctgagagttttatttggagggtgttctttgtgggtgagtagtg 698591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 7162344 - 7162267
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagct 99  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||||||||| ||||||||    
T  7162344 ttctttgactcaagttggtttttgggtttttgtttt-gtgctctttcgatggatcggaggtcgcgaggttatggaagct 7162267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 271
Target Start/End: Complemental strand, 18313636 - 18313425
Alignment:
Q  56 ttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttgggg 154  Q
    |||| |||||| ||||||| | ||||||||||||||  || ||||||||| ||||||  | ||||||||||||| | |||||| || |||||| || ||     
T  18313636 ttgtactctttcggtggattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagtttgggttttagga 18313537  T
Q  155 tctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttttttgtgaaggagtct 254  Q
    | | |||||||| | || |||||||||||   ||||||||||||  |||| | |||| || || | |||||||| ||| |||||||||     |||||||    
T  18313536 ttttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgagtggtgatggatatcgtgtttacggtgtttgtttttt----tggagtct 18313442  T
Q  255 gttttaggtgatgatgt 271  Q
    |||||||||| ||||||    
T  18313441 gttttaggtggtgatgt 18313425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 24995422 - 24995201
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||||||||||   | |||||||||||  |||| || |||||||||||||||  || ||||||||| || ||| || ||||    
T  24995422 ttctttgactcaagttggtttttgggctttg--tgttgtgctctttcagtgggtcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggt 24995325  T
Q  120 gctcttcgataggtggctcagcttgggtgttgggg-tctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatt 218  Q
    ||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||  |||||||||||||| ||     
T  24995324 gctcttcgaaatatggctcagcttgggtgttgggggtctaggagttttattttgagggtgttctttgtgcgtgagtagtgacgatgggcggtggtggata 24995225  T
Q  219 ttgtgtttacagtgcttgtttttt 242  Q
      ||||||||| ||||||||||||    
T  24995224 ccgtgtttacaatgcttgtttttt 24995201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 271
Target Start/End: Complemental strand, 31207389 - 31207143
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||||||||||||| ||||||| |||   | ||||||| ||| ||||||||||||||||||||||||  || ||||| |||  | ||| || ||||    
T  31207389 ttctttgactcaagttggattttgggatttg--tgttgtgctttttcggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggt 31207292  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||| | ||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||  |||||||| ||||| ||      
T  31207291 gctcttcgaaatgtggctcagcttgggtgttggagtatgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatac 31207192  T
Q  220 tgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    |||||||||||||||| |||||| |    |||||||||||||||| ||||||    
T  31207191 tgtgtttacagtgcttttttttttt---tgagtctgttttaggtggtgatgt 31207143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 9519553 - 9519774
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||||||||||   | ||||||||||| ||||| |||||||| |||| ||||  || ||||||||| |||||| || ||||    
T  9519553 ttctttgactcaagttggtttttgggctttg--tgttgtgctctttcggtgggtcggaggttgcgaagtttgtgatagctgcatgatcattcggttaggt 9519650  T
Q  120 gctcttcgataggtggctcagcttgggtgttgggg-tctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatt 218  Q
    ||||||||| |  |||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||||||||  |||||||||||||| ||     
T  9519651 gctcttcgaaatatggctcagcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcggtggtggata 9519750  T
Q  219 ttgtgtttacagtgcttgtttttt 242  Q
      |||||||||||| || ||||||    
T  9519751 ccgtgtttacagtgattttttttt 9519774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 20138480 - 20138726
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||||| | |||||||||||||||||   | ||||||||||| ||||||||||||||||||||||||  || ||||||||| || ||| || ||||    
T  20138480 ttctttgacttatgttggtttttgggctttg--tgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggt 20138577  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagtttta-ttttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatt 218  Q
    ||||||||| | ||| | | |||||||||||||||||| ||||||||| ||||||||||||||||||  |||||||||||  ||||| |||||||| ||     
T  20138578 gctcttcgaaatgtgacccggcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggata 20138677  T
Q  219 ttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
      |||||||||||||||| |||||     ||||||||||||||||| ||||||    
T  20138678 ccgtgtttacagtgcttgattttt----tggagtctgttttaggtggtgatgt 20138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 37986885 - 37986665
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||||||||||||||||||| |||||   | ||||||||||| ||||| ||||||||||||||||||  || |||||| || || ||| || ||||    
T  37986885 ttctttgactcaagttggtttttgtgctttg--tgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggt 37986788  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||| | |||||||||||||||||||  ||||| |||||||||||| |||||||||||||| ||||||||| ||  |||||| ||||||  ||      
T  37986787 gctcttcgaaatgtggctcagcttgggtgtttcggtctgggagttttatttggagggtgttctttgtgggtgagtaatgacgatgggtggtggtagatac 37986688  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
     ||||||||| ||||||||||||    
T  37986687 cgtgtttacaatgcttgtttttt 37986665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 32066321 - 32066130
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtg 120  Q
    |||||||||| ||||||||||||||||||   | ||||||||||| ||||| || ||||| |||||||||  || ||||||||| |||||| || || ||    
T  32066321 tctttgactccagttggtttttgggctttg--tgttgtgctctttcggtggttcagaggttgcgaggtttgtgatagctgcatgatcattcggttagatg 32066224  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtg 214  Q
    ||||| || | |||| |||||||||||||||||||||  ||||||||||| |||||||||||||| | ||||||||||  ||||||||||||||    
T  32066223 ctctttgaaatgtggttcagcttgggtgttggggtctgagagttttatttggagggtgttctttgtgagtgagtagtgacgatgggcggtggtg 32066130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 12898294 - 12898126
Alignment:
Q  28 actcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttc 126  Q
    ||||||||||||||| |||||||   | ||||||||||| | ||| ||||||||||||||||||  || |||||| || || ||| || |||||||||||    
T  12898294 actcaagttggttttggggctttg--tgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgc-tgatccttcggttaggtgctcttc 12898198  T
Q  127 gataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtg 198  Q
    || | ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  12898197 gaaatgtggctcagcttgggtgttggggtcttagagttttattttgagggtgttctttgtgggtgagtagtg 12898126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 36630891 - 36631047
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtg 120  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||| ||||||||| || ||| ||||||||    
T  36630891 ttctttgactctagtttgtttttgggcttttgtttt-gtgctctttcgatggatcggaggtcgcgaggttgtgggagctgcatgatccttcggtcaggtg 36630989  T
Q  121 ctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtg 178  Q
    |||||||| | |||||||| ||||| ||| |||||||  | |||||| |||| |||||    
T  36630990 ctcttcgaaatgtggctcaacttggatgtgggggtctgcgtgttttagtttgggggtg 36631047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 41893427 - 41893209
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||| ||||||||| ||||||||||||   | ||||||||||||||||| |  |||||||| ||||||  || ||||||||| || |||  | ||||    
T  41893427 ttctttgtctcaagttg-tttttgggctttg--tgttgtgctcttttggtggttaagaggtcgcaaggtttgtgatagctgcatgatccttctat-aggt 41893332  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
     |||||||| | |||||||||||||||||||| ||||| |||||| |||||| ||||||||||||| ||||||||||||  ||||| |||||||| ||      
T  41893331 actcttcgaaatgtggctcagcttgggtgttgaggtctgggagttctattttcagggtgttctttgtgggtgagtagtgacgatggtcggtggtggatac 41893232  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
     ||||||||||| ||||||||||    
T  41893231 cgtgtttacagttcttgtttttt 41893209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 271
Target Start/End: Complemental strand, 15821405 - 15821157
Alignment:
Q  22 tctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgc 121  Q
    ||||||||| | ||||||||||||||||||||||| |||||||||  ||||||| ||||||| |||||| ||||| |  | ||||||||  || ||| ||    
T  15821405 tctttgacttatgttggtttttgggcttttgtttt-gtgctctttcagtggatcagaggtcgagaggttgtggaaacaacttgttcatttggttaggagc 15821307  T
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagg-gtgttctttgggggtgagtagtggtgatgggcggtggtgaatttt 220  Q
    | ||||| | ||||||||||| || |||||  |||| ||||||||||||||||| ||||||||| || ||||||||||| |||| | ||| ||| |||||    
T  15821306 ttttcga-atgtggctcagctcggatgttgaagtctgggagttttattttgaggagtgttcttttggagtgagtagtggcgatgagtggttgtggatttt 15821208  T
Q  221 gtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    ||||||||  || ||  ||| ||| |||| |||||| ||||||| ||||||    
T  15821207 gtgtttaccttgttttgtttctgttaaggtgtctgtcttaggtggtgatgt 15821157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 34389032 - 34388841
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||||||||||   | ||||||| ||| ||||||||| |||||| |||||||  || ||||   || || |||||| ||||    
T  34389032 ttctttgactcaagttggtttttgggctttg--tgttgtgctatttcggtggatcgtaggtcgtgaggtttgtgatagctag-tgatccttcagttaggt 34388936  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtg 214  Q
    | |||||   | |||||||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||||||  ||| ||||||||||    
T  34388935 gttcttcatcatgtggctcagcttgggtgttggggtatgagagttttattttgagggtgttctttgtgggtgagtagtgacgataggcggtggtg 34388841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 38577806 - 38577640
Alignment:
Q  32 aagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgatag 131  Q
    |||||||||||||| |||||||||| ||||||||| |||||||| ||||||| ||| || |||||||||||||||||||| ||  || ||| ||||| |     
T  38577806 aagttggtttttggacttttgtttt-gtgctctttcggtggatcagaggtcgagagtttgtggaagctgcatgttcattcggtttggagcttttcga-at 38577709  T
Q  132 gtggctcagcttgggtgttggggtct-aggagttttattttgagg-gtgttctttgggggtgagtagtg 198  Q
     |||| || |||||||||||  ||||  |||||||||||||| || ||||||||||||| |||||||||    
T  38577708 atggcgcaacttgggtgttgaagtctggggagttttattttgtggagtgttctttggggatgagtagtg 38577640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 239
Target Start/End: Complemental strand, 35816238 - 35816056
Alignment:
Q  54 ttttgtgctcttttggtggatcggaggtcgcgaggttttggaagctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggg 153  Q
    |||||||||||||||||||||||||||| | ||| || |||||||||||||||||||| || | | | | ||||| | ||||||||| |||| |||||      
T  35816238 ttttgtgctcttttggtggatcggaggttgagagattgtggaagctgcatgttcattcggttaagagtttttcga-atgtggctcagtttggatgttgaa 35816140  T
Q  154 gtctaggagttttattttga-gggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgttt 239  Q
    |||   |||||   |||||| ||||||||||||||||||||||||| ||||||| ||| ||| ||  |||||||||| || ||||||    
T  35816139 gtcagagagtt---ttttgaggggtgttctttgggggtgagtagtgatgatgggtggttgtggatactgtgtttacaatgtttgttt 35816056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 242
Target Start/End: Original strand, 35821432 - 35821514
Alignment:
Q  160 gagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttgtgtttacagtgcttgtttttt 242  Q
    |||||||||||| ||||||||||||| || ||||||||| |||||||||||| |  ||  |||||||||||||||||||||||    
T  35821432 gagttttattttaagggtgttctttgaggatgagtagtgatgatgggcggtgctagatactgtgtttacagtgcttgtttttt 35821514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 16457488 - 16457282
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||| ||||||   | ||||||||||| ||||| ||||| |||| |||||||  || ||||||||| || |   || ||||    
T  16457488 ttctttgactcaagttggtttttaggctttg--tgttgtgctctttcggtggttcggatgtcgtgaggtttgtgatagctgcatgatcttgtggttaggt 16457391  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    |||||| || | |||||||||||||||              ||||||||||| |||||| |||||  ||||||||||||  ||||| |||||||| ||      
T  16457390 gctctttgaaatgtggctcagcttggg--------------agttttattttcagggtggtctttatgggtgagtagtgacgatggacggtggtggatac 16457305  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
     ||||||||||||||||||||||    
T  16457304 cgtgtttacagtgcttgtttttt 16457282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 168
Target Start/End: Original strand, 22773598 - 22773699
Alignment:
Q  68 ggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttggggtctaggagtttt 166  Q
    ||||||| ||||||| ||||||||  || | || |||| || ||| || ||||||||||||| | ||||||||| |||||||||||||||| ||||||||    
T  22773598 ggtggattggaggtcacgaggtttgtgatatctacatgatccttctgttaggtgctcttcgaaatgtggctcagtttgggtgttggggtctgggagtttt 22773697  T
Q  167 at 168  Q
    ||    
T  22773698 at 22773699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 22773815 - 22773861
Alignment:
Q  168 ttttgagggtgttctttgggggtgagtagtggtgatgggcggtggtg 214  Q
    |||||||||||||||||| ||||||||||||  ||||||| ||||||    
T  22773815 ttttgagggtgttctttgtgggtgagtagtgacgatgggcagtggtg 22773861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 5759 - 5980
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||  || |||| | || || ||| || ||||    
T  5759 ttctttgactcaggttggtttttgggcttt-gtttttgtgctctttcggtagatcggaggtcgcaaggtttgtgatagctacttgatccttcggttaggt 5857  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||  | |||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||| ||      
T  5858 gctcttcgtaatgtggctcagcttgggtgttgggatctgggagttttattttgagggtgttttttgtgggtgagtagtgatgatgggaggtggtggatac 5957  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
      ||||||| |||||||||||||    
T  5958 catgtttacggtgcttgtttttt 5980  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 3117547 - 3117767
Alignment:
Q  21 ttctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcaggt 119  Q
    ||||||||||||||||||||||||||||||   | |||||||||||  |||| ||||||||||||||||||  || || |||||| || |||  | | ||    
T  3117547 ttctttgactcaagttggtttttgggctttg--tgttgtgctctttatgtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcgattatgt 3117644  T
Q  120 gctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattt 219  Q
    ||||||||| | |||||||| ||||||||||||||||| ||||||||||||  ||||||||||||| |||| ||||| |  |||| |||||||||  |      
T  3117645 gctcttcgaaatgtggctcaacttgggtgttggggtctgggagttttatttatagggtgttctttgtgggtaagtagagacgatgagcggtggtggttac 3117744  T
Q  220 tgtgtttacagtgcttgtttttt 242  Q
     ||||||||||||||||||||||    
T  3117745 cgtgtttacagtgcttgtttttt 3117767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 271
Target Start/End: Original strand, 14663231 - 14663380
Alignment:
Q  122 tcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaattttg 221  Q
    ||||||| | ||||||| |||||| ||||||||| | ||||||||||||||||| ||||||||| ||||||||||||  |||||||||||||| || |||    
T  14663231 tcttcgaaatgtggctcggcttggatgttggggtttgggagttttattttgaggatgttctttgcgggtgagtagtgacgatgggcggtggtggatattg 14663330  T
Q  222 tgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
    |||||||||||||| || ||| |   ||||||||||||||||| ||||||    
T  14663331 tgtttacagtgctttttgttttttttggagtctgttttaggtggtgatgt 14663380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 10541980 - 10542106
Alignment:
Q  116 aggtgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtga 215  Q
    ||||||||||||| | |||||||||||||||||||||||||| | |||||||||| |||||| ||||||| ||||||||||||  ||||||||||||||     
T  10541980 aggtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtattctttgtgggtgagtagtgacgatgggcggtggtgg 10542079  T
Q  216 attttgtgtttacagtgcttgtttttt 242  Q
    ||   || |||| ||||||||||||||    
T  10542080 ataccgtatttaaagtgcttgtttttt 10542106  T

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Target: scaffold0068 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 35800 - 35558
Alignment:
Q  20 attctttgactcaagttggtttttgggcttttgtttttgtgctcttttggtggatcggaggtcgcgaggttttgga-agctgcatgttcattcagtcagg 118  Q
    ||||||||||| |||||||||||||||||||   | ||||||||||| ||||||||||||||| |||| |||  || ||||||||| ||  || || |||    
T  35800 attctttgacttaagttggtttttgggcttta--tgttgtgctctttcggtggatcggaggtcacgagatttgtgatagctgcatgatccatcggttagg 35703  T
Q  119 tgctcttcgataggtggctcagcttgggtgttggggtctaggagttttattttgagggtgttctttgggggtgagtagtggtgatgggcggtggtgaatt 218  Q
    |||||||||| | | |||||||||||||||||||||| | |||||||  |||| || |||||||| |  ||||||| |||  ||||||| |||||| ||     
T  35702 tgctcttcgaaatgaggctcagcttgggtgttggggtgtgggagttt--tttttagagtgttcttagcaggtgagt-gtgacgatgggcagtggtggata 35606  T
Q  219 ttgtgtttacagtgcttgttttttgtgaaggagtctgttttaggtgatgatgt 271  Q
     |||||||||||||||||||||||     ||||||||||||||||||||||||    
T  35605 ctgtgtttacagtgcttgtttttt-----ggagtctgttttaggtgatgatgt 35558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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