View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_low_21 (Length: 277)
Name: NF6363_low_21
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 14678179 - 14678422
Alignment:
| Q |
12 |
agtagcaaaggattctagtatgaaatcaagaccttgtctggcagcaaggaagtattacatttattcaatgtattgcctcttttgggaaaactgagaaaag |
111 |
Q |
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| T |
14678179 |
agtagcaaaggattctagtatgaaatcaagaccttgtctggcagcaaggaagtattacatttattcaatgtattgcctcttttgggaaaactgagaaagg |
14678278 |
T |
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| Q |
112 |
ttgggttcggtttacaatatagattcacagaataagatgaacttgcacttgcactttttctgccaattactaagttgatataaaacttcaaaatatttaa |
211 |
Q |
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| T |
14678279 |
ttgggttcggtttacaatatagattcgcagagtaagatgaacttgcacttgcactttttctgccaattactaagttgatataaagctttaaaatatttaa |
14678378 |
T |
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| Q |
212 |
ggggttccagtcaaatgtatgcgaagtacgttacctgttcagcg |
255 |
Q |
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| T |
14678379 |
ggggttccattcaaatgtatgcgaggtatgttacctgttcagcg |
14678422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 255
Target Start/End: Complemental strand, 14660900 - 14660657
Alignment:
| Q |
12 |
agtagcaaaggattctagtatgaaatcaagaccttgtctggcagcaaggaagtattacatttattcaatgtattgcctcttttgggaaaactgagaaaag |
111 |
Q |
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| T |
14660900 |
agtagcaaaggattctagtatgaaatcaagaccttgtctggcagcaaggaagtattacatttattcaatgtattgcctcttttgggaaaactgagaaagg |
14660801 |
T |
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| Q |
112 |
ttgggttcggtttacaatatagattcacagaataagatgaacttgcacttgcactttttctgccaattactaagttgatataaaacttcaaaatatttaa |
211 |
Q |
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| T |
14660800 |
ttgggttcggtttacaatataaattcacagagtaagatgaacttgcacttgcactttttctgccaattactaagttgatataaagctttaaaatatttaa |
14660701 |
T |
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| Q |
212 |
ggggttccagtcaaatgtatgcgaagtacgttacctgttcagcg |
255 |
Q |
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| T |
14660700 |
ggggttccattctaatgtatgcgaggaatgttacatgttcagcg |
14660657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 14644423 - 14644668
Alignment:
| Q |
12 |
agtagcaaaggattctagtatgaaatcaagaccttgtctggcagcaaggaagtattacatttattcaatgtattgcctcttttgggaaaa--ctgagaaa |
109 |
Q |
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| T |
14644423 |
agtagcaaaggattctagaatgaaatcaagaccttgtctggcagcaaggaagtattacatttattcaacgtattgcctcttttgggaaaaaactgagaaa |
14644522 |
T |
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| Q |
110 |
agttgggttcggtttacaatatagattcacagaataagatgaacttgcacttgcactttttctgccaattactaagttgatataaaacttcaaaatattt |
209 |
Q |
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| T |
14644523 |
ggttgggttcggtttacaatatagattcacagaataagatgaacttgcacttgcactttttctgctaattactaagttgatataaaactttaaaatattt |
14644622 |
T |
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| Q |
210 |
aaggggttccagtcaaatgtatgcgaagtacgttacctgttcagcg |
255 |
Q |
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| T |
14644623 |
aatgggttccattcaaatgtatgtgaagtatgttacctgttcagcg |
14644668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 14689325 - 14689471
Alignment:
| Q |
23 |
attctagtatgaaatcaagaccttgtctggcagcaaggaagtattaca---------tttattcaatgtattgcctcttttgggaaaactgagaaaagtt |
113 |
Q |
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| T |
14689325 |
attcttgtatgaaatcaagaccttgtccagcagcaaggaaatattacagtttttacatttcttcaatgcattgcctcttctgggaaaactgagaaagttt |
14689424 |
T |
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| Q |
114 |
gggttcggtttacaatatagattcacagaataagatgaacttgcact |
160 |
Q |
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| T |
14689425 |
gggttttgtttacaatatagattcacggagtaagatgaacatgcact |
14689471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 14689534 - 14689585
Alignment:
| Q |
210 |
aaggggttccagtcaaatgtatgcgaagtacgttacctgttcagcgtgatga |
261 |
Q |
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| T |
14689534 |
aaggggttccattcaaatgtatacgaggtatgttacctgttcagcgcgatga |
14689585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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