View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6363_low_25 (Length: 265)

Name: NF6363_low_25
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6363_low_25
NF6363_low_25
[»] chr6 (2 HSPs)
chr6 (1-84)||(27966103-27966186)
chr6 (1-82)||(24475333-24475415)
[»] chr2 (11 HSPs)
chr2 (1-84)||(35672589-35672673)
chr2 (1-84)||(13806894-13806978)
chr2 (1-84)||(8360042-8360126)
chr2 (1-84)||(27095550-27095634)
chr2 (1-84)||(7692945-7693029)
chr2 (1-76)||(19793547-19793623)
chr2 (2-84)||(38459419-38459502)
chr2 (24-84)||(24318320-24318380)
chr2 (36-84)||(29650899-29650947)
chr2 (2-76)||(27499621-27499696)
chr2 (5-84)||(11953219-11953299)
[»] chr1 (3 HSPs)
chr1 (1-84)||(21876061-21876145)
chr1 (1-84)||(6183357-6183441)
chr1 (8-83)||(9809558-9809634)
[»] scaffold0003 (3 HSPs)
scaffold0003 (1-84)||(17635-17719)
scaffold0003 (1-84)||(31781-31865)
scaffold0003 (1-84)||(37978-38062)
[»] chr7 (2 HSPs)
chr7 (1-84)||(16428922-16429006)
chr7 (38-84)||(29167146-29167191)
[»] chr4 (5 HSPs)
chr4 (1-84)||(21527148-21527232)
chr4 (1-84)||(4876302-4876386)
chr4 (1-84)||(8777497-8777581)
chr4 (5-84)||(31189044-31189124)
chr4 (24-76)||(26133747-26133799)
[»] scaffold0884 (1 HSPs)
scaffold0884 (1-84)||(610-694)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-84)||(84335-84419)
[»] chr8 (1 HSPs)
chr8 (3-84)||(12464733-12464815)
[»] chr3 (3 HSPs)
chr3 (1-82)||(39291481-39291563)
chr3 (1-82)||(7424179-7424261)
chr3 (4-84)||(9010614-9010695)
[»] chr5 (1 HSPs)
chr5 (3-82)||(31132310-31132390)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 27966186 - 27966103
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27966186 agtgtgtatctttcccttcagattttttcctgctgatgtgaaaactaaaacccccttgatgttatatgtatattttgtagtagt 27966103  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 24475415 - 24475333
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 82  Q
    |||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  24475415 agtgtgtatctttctcttcagatattttccgtgctgatgtaaaaactaaaacccccttgatgttaaatgtatatttggtagta 24475333  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35672589 - 35672673
Alignment:
Q  1 agtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35672589 agtgtgtatctttcccttcagatatttttcgtgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 35672673  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 13806894 - 13806978
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13806894 agtgtgtatctttccctttagatattttccatgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagt 13806978  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8360042 - 8360126
Alignment:
Q  1 agtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8360042 agtgtgtatattttccttcagatatttttcgtgctgatgtgaaaactaaaacccccatgatgttaaatgtatattttgtagtagt 8360126  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27095550 - 27095634
Alignment:
Q  1 agtgtgtatctttcccttcagattttt-tcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||||||||||||||| |||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27095550 agtgtgtatctttccctttagatatttctcgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagt 27095634  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 7692945 - 7693029
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  7692945 agtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacccccttgtcgttaaatctatattttgtagtagt 7693029  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 19793547 - 19793623
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatatttt 76  Q
    |||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  19793547 agtgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatatttt 19793623  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 38459419 - 38459502
Alignment:
Q  2 gtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||||||||| || |||||| |||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||    
T  38459419 gtgtgtatcttttccatcagatattttccgtgctgatgtgaaaattaaaaccccattgatgttaaatctatattttgtagtagt 38459502  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 24318380 - 24318320
Alignment:
Q  24 tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||| ||||||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  24318380 tttttcgtgctgatgtgaaaactaaaacccctatgatgtgaaatgtatattttgtagtagt 24318320  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 29650899 - 29650947
Alignment:
Q  36 atgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29650899 atgtgaaaactaaaacccccttgatgttaaatatatattttgtagtagt 29650947  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 27499621 - 27499696
Alignment:
Q  2 gtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatatttt 76  Q
    ||||||||||||| | |||| | |||||| |||||||||||||||| ||| |||| |||||| |||||||||||||    
T  27499621 gtgtgtatctttctcatcaggtatttttcgtgctgatgtgaaaactgaaaaccccctgatgtcaaatgtatatttt 27499696  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 11953299 - 11953219
Alignment:
Q  5 tgtatctttcccttcagattttttc-ctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||||||||| |||| | ||| | ||||||||||||||||| ||| |||| || ||| ||| ||||||||| |||||||    
T  11953299 tgtatctttcccctcaggtatttcctctgctgatgtgaaaacttaaaaccccatgttgtcaaaagtatattttctagtagt 11953219  T

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Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21876061 - 21876145
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21876061 agtgtgtatctttcccttcagatattttccgtgctgatgtgaaaactaaaccccccttgatgttaaatgtatattttgtagtagt 21876145  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 6183441 - 6183357
Alignment:
Q  1 agtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  6183441 agtgtgtatctttcccttcaggtatttttcgtgctgatgtgaaaactaaaacagctttgatgttaaatgtatattttgtagtagt 6183357  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 9809558 - 9809634
Alignment:
Q  8 atctttcccttcagattttttc-ctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtag 83  Q
    ||||||||| |||||| ||||| |||| ||||||||||| |||| ||||||| ||| ||||||||||||| ||||||    
T  9809558 atctttcccatcagatattttctctgccgatgtgaaaaccaaaaaccccttgttgtcaaatgtatattttctagtag 9809634  T

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Target: scaffold0003 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 17719 - 17635
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17719 agtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagt 17635  T

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Target: scaffold0003; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 31865 - 31781
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31865 agtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagt 31781  T

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Target: scaffold0003; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 38062 - 37978
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38062 agtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagt 37978  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16429006 - 16428922
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16429006 agtgtgtatctttcccttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagt 16428922  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 29167191 - 29167146
Alignment:
Q  38 gtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||    
T  29167191 gtgaaaactaaa-cccccttgattttaaatgtatattttgtagtagt 29167146  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 21527232 - 21527148
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21527232 agtgtgtatctttccatttagatattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 21527148  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 4876386 - 4876302
Alignment:
Q  1 agtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||| |||||||| |||| ||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4876386 agtgtatatctttctcttctgatatttttcgtgctgatgtgaaaactaaaacccgcttgatgttaaatgtatattttgtagtagt 4876302  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 8777581 - 8777497
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||||||||||| |||||| | |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  8777581 agtgtgtatctttctcttcagttattttccgtgctgatgtaaaaactaaaacccccttgatgttaaatctatattttgtagtagt 8777497  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 31189124 - 31189044
Alignment:
Q  5 tgtatctttcccttcagattttttcctg-ctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||| | ||||||   |||||||||||| ||||| | || ||||||||||| |||||||| |||||||    
T  31189124 tgtatctttcccttcaggtattttccgcactgatgtgaaaattaaaaacaccctgatgttaaatttatattttctagtagt 31189044  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 26133799 - 26133747
Alignment:
Q  24 tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatatttt 76  Q
    |||||| |||||||||||||||| ||| |||| |||||| |||| ||||||||    
T  26133799 tttttcatgctgatgtgaaaactgaaaaccccctgatgtcaaatatatatttt 26133747  T

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Target: scaffold0884 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 610 - 694
Alignment:
Q  1 agtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||||||| | |||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  610 agtgtgtatctttcccttcaggtatttttcgtgctgatgtgaaaactaaaacacctttgatgttaaatgtatattttgtagtagt 694  T

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Target: scaffold0014 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 84419 - 84335
Alignment:
Q  1 agtgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  84419 agtgtgtatctttcccttcagatattttccgtgctgatgtgaaaactaaaacccctatgatgttaaatgtatattttatagtagt 84335  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 12464733 - 12464815
Alignment:
Q  3 tgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    |||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12464733 tgtgtatctttctcttcagttattttccgtgctgatgtgaaaactaaaacccccttgatgttaaatctatattttgtagtagt 12464815  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 39291563 - 39291481
Alignment:
Q  1 agtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 82  Q
    ||||||||||||| ||||||||  |||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  39291563 agtgtgtatcttttccttcagaaatttttcgtgctgatgtgaaaactgaaacccccgtgatgttaaatgtatattttgtagta 39291481  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7424179 - 7424261
Alignment:
Q  1 agtgtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 82  Q
    ||||||||||||| | ||||||| |||||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||    
T  7424179 agtgtgtatcttttctttcagatatttttcgtgctgatgtgaaaactaaaaccctcgtgatgttagatgtatattttgtagta 7424261  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 9010614 - 9010695
Alignment:
Q  4 gtgtatctttcccttcagat-tttttcctgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagtagt 84  Q
    ||||||||||||||||| || |||||| || ||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  9010614 gtgtatctttcccttcaaatatttttcgtgttgatgtgaaaactaaaacatccttaatgttaaatgtatattttgtagtagt 9010695  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 31132310 - 31132390
Alignment:
Q  3 tgtgtatctttcccttcagattttttcc-tgctgatgtgaaaactaaaacccccttgatgttaaatgtatattttgtagta 82  Q
    ||||||||||||||||||||| |||||| ||| |||||||||| |||| ||||  ||||||||||| ||||||||||||||    
T  31132310 tgtgtatctttcccttcagatattttccgtgccgatgtgaaaaataaaccccctctgatgttaaatatatattttgtagta 31132390  T

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