View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_low_26 (Length: 251)
Name: NF6363_low_26
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_low_26 |
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| [»] scaffold0003 (3 HSPs) |
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| [»] scaffold0884 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 24475538 - 24475715
Alignment:
| Q |
8 |
gaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctctatccgtaaaat |
107 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24475538 |
gaaaactttggctaacttattcttacatcagtgggtgagaactgcctgaggtaaaaacaaattttcacttttaactaatccattcctctatccgtaaaac |
24475637 |
T |
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| Q |
108 |
gtatccacacaaatttgcactttatcactctcaaacaaaccgtccaactctcaaat-caaataccaccgtttccttgc |
184 |
Q |
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|||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||| ||| |||||||||||||||| |
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| T |
24475638 |
gtatccacacaaattttcactttatcactctcaaaaaaatcgtcctactctcaaataaaaaaaccaccgtttccttgc |
24475715 |
T |
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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 24475729 - 24475791
Alignment:
| Q |
178 |
tccttgcaatcgatgctcaattgaactctcagagaatcccgttgaagctcaatcgaactctct |
240 |
Q |
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| T |
24475729 |
tccttgcaatcgatgctcaatcgaactctcaaagaatcccgtcgaagctcaatcgaactctct |
24475791 |
T |
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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 27095434 - 27095337
Alignment:
| Q |
1 |
tttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctctat |
98 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||||| |||| ||||||| || |||||| |
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| T |
27095434 |
tttgactgaaaactttggctaacttatttttacttcagtggatgagaactgcctgatgtaaaaacaaattttcacctttaccttatccctttctctat |
27095337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 13806765 - 13806683
Alignment:
| Q |
17 |
ggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctctatc |
99 |
Q |
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| T |
13806765 |
ggctaacttatttttacttaagtggatgagaactgactgaggtaaaaacaaattttcacctttaccttatccctttctctatc |
13806683 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 38459298 - 38459207
Alignment:
| Q |
5 |
agtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctctatc |
99 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| || ||||| |||| ||||||| |||||||||| |
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| T |
38459298 |
agtgaaaactttggctaacttatttttacatcattgggtgagaactgcttgacgtaaaaaaaa---ttcacctttaccttatcccttcctctatc |
38459207 |
T |
|
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Target: scaffold0003 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38178 - 38252
Alignment:
| Q |
1 |
tttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcac |
75 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||| ||||| |
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| T |
38178 |
tttgagtgaaaactttggctaacttattactacatcagtgggtgacaagtgcctgaggtaaaaacaaatgttcac |
38252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17835 - 17909
Alignment:
| Q |
1 |
tttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcac |
75 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||| || || ||||||||||||||||| ||||| |
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| T |
17835 |
tttgagtgaaaactttggctaatttattactacatcagtgggtgacaagtgcctgaggtaaaaacaaatgttcac |
17909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31981 - 32055
Alignment:
| Q |
1 |
tttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcac |
75 |
Q |
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|
|||||||||||||||||||||| ||||| ||||||||||||||| || || ||||||||||||||||| ||||| |
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| T |
31981 |
tttgagtgaaaactttggctaatttattactacatcagtgggtgacaagtgcctgaggtaaaaacaaatgttcac |
32055 |
T |
|
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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 16429122 - 16429196
Alignment:
| Q |
1 |
tttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcac |
75 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||| || || ||||||||||||||||| ||||| |
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| T |
16429122 |
tttgagtgaaaactttggctaatttattactacatcagtgggtgacaagtgcctgaggtaaaaacaaatgttcac |
16429196 |
T |
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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 31189244 - 31189336
Alignment:
| Q |
1 |
tttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctc |
95 |
Q |
| |
|
|||| |||||||||||||||||| | |||| |||||||||| ||||||||| ||||||||||| ||||||||||| |||| ||||||| |||||| |
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| T |
31189244 |
tttgggtgaaaactttggctaaccttttttcacatcagtgg-tgagaactgcctgaggtaaaaccaaattttcac-tttaccttatcccttcctc |
31189336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26133940 - 26134017
Alignment:
| Q |
1 |
tttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcactttta |
80 |
Q |
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|
|||||||||||| |||||||||| | |||| |||||||||| ||||||||| ||||| |||||||||||||||| |||| |
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| T |
26133940 |
tttgagtgaaaattttggctaacat-ttttcacatcagtgg-tgagaactgcatgagggaaaaacaaattttcaccttta |
26134017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4876502 - 4876573
Alignment:
| Q |
1 |
tttgagtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttca |
74 |
Q |
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|
||||||||||||||||||||||||| |||| ||||||| ||| | ||||| ||||||| |||||||||||||| |
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| T |
4876502 |
tttgagtgaaaactttggctaactt-ttttcacatcaggtggttaaaactgcctgaggt-aaaacaaattttca |
4876573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 6183561 - 6183648
Alignment:
| Q |
6 |
gtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctc |
95 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||| ||||| ||||| |||| | |||||| ||||||||||| | ||||||| |||||| |
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| T |
6183561 |
gtgaaaactttggctaactt-ttttcacatcagt-ggtgaaaactgcctgaagggaaaacacattttcactttgaccttatcccttcctc |
6183648 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 31132187 - 31132130
Alignment:
| Q |
6 |
gtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaa |
64 |
Q |
| |
|
||||||||||| ||||| || |||| |||||||||||||| ||||| |||||||||||| |
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|
| T |
31132187 |
gtgaaaactttagctaattt-ttttcacatcagtgggtgaaaactgcctgaggtaaaaa |
31132130 |
T |
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Target: scaffold0884 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0884
Description:
Target: scaffold0884; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 489 - 402
Alignment:
| Q |
6 |
gtgaaaactttggctaacttatttttacatcagtgggtgagaactggctgaggtaaaaacaaattttcacttttaacttatccattcctc |
95 |
Q |
| |
|
||||||||| |||||||||| |||| |||||||||| ||| ||||| |||| | |||||| ||||||||||| | ||||||| |||||| |
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| T |
489 |
gtgaaaactatggctaactt-ttttcacatcagtgg-tgaaaactgcctgaagggaaaacacattttcactttgaccttatcccttcctc |
402 |
T |
|
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