View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6363_low_35 (Length: 224)

Name: NF6363_low_35
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6363_low_35
NF6363_low_35
[»] chr2 (20 HSPs)
chr2 (12-218)||(387487-387693)
chr2 (39-133)||(14436916-14437010)
chr2 (12-133)||(39338510-39338631)
chr2 (38-133)||(5254590-5254684)
chr2 (9-133)||(7874584-7874709)
chr2 (12-133)||(10524409-10524529)
chr2 (51-127)||(43248882-43248958)
chr2 (22-133)||(14405520-14405630)
chr2 (12-127)||(41877207-41877322)
chr2 (38-133)||(43816096-43816191)
chr2 (67-133)||(9823695-9823761)
chr2 (36-133)||(3745676-3745773)
chr2 (56-132)||(15457817-15457893)
chr2 (14-133)||(14106172-14106289)
chr2 (35-117)||(17116553-17116635)
chr2 (37-126)||(13512495-13512584)
chr2 (36-133)||(45311453-45311550)
chr2 (97-133)||(7461071-7461107)
chr2 (51-126)||(7455602-7455676)
chr2 (66-133)||(25280964-25281031)
[»] chr7 (22 HSPs)
chr7 (12-133)||(31971784-31971905)
chr7 (29-133)||(5859932-5860036)
chr7 (29-133)||(47325534-47325638)
chr7 (14-133)||(10244493-10244612)
chr7 (12-133)||(34391493-34391614)
chr7 (29-133)||(25161136-25161240)
chr7 (29-133)||(44353213-44353317)
chr7 (9-132)||(3867423-3867545)
chr7 (9-133)||(3419048-3419170)
chr7 (13-133)||(6585198-6585318)
chr7 (14-133)||(48161690-48161808)
chr7 (28-133)||(42454383-42454488)
chr7 (29-133)||(33434480-33434584)
chr7 (29-132)||(41089396-41089496)
chr7 (12-131)||(37795307-37795426)
chr7 (12-131)||(37795635-37795754)
chr7 (12-94)||(38306571-38306653)
chr7 (9-119)||(3419321-3419429)
chr7 (29-128)||(43482233-43482331)
chr7 (71-133)||(40726140-40726202)
chr7 (36-131)||(11378772-11378866)
chr7 (66-133)||(35745481-35745548)
[»] chr4 (19 HSPs)
chr4 (32-133)||(7703018-7703118)
chr4 (12-133)||(35329318-35329439)
chr4 (12-133)||(27555579-27555701)
chr4 (28-133)||(4306032-4306136)
chr4 (9-133)||(8255335-8255459)
chr4 (9-133)||(8268753-8268877)
chr4 (36-133)||(46698428-46698525)
chr4 (44-129)||(49528429-49528514)
chr4 (29-133)||(8705789-8705893)
chr4 (29-133)||(30964765-30964869)
chr4 (38-133)||(2826118-2826213)
chr4 (51-133)||(9750117-9750198)
chr4 (12-117)||(20464900-20465005)
chr4 (38-127)||(35341006-35341097)
chr4 (9-133)||(36689454-36689578)
chr4 (67-133)||(30167212-30167278)
chr4 (35-128)||(31050315-31050408)
chr4 (29-132)||(11281375-11281478)
chr4 (35-127)||(52868766-52868859)
[»] chr1 (15 HSPs)
chr1 (12-133)||(30685573-30685694)
chr1 (12-126)||(46814121-46814235)
chr1 (12-133)||(31584689-31584809)
chr1 (28-133)||(6804865-6804969)
chr1 (12-133)||(41920768-41920889)
chr1 (28-133)||(7002514-7002619)
chr1 (29-133)||(40216155-40216259)
chr1 (9-133)||(5459468-5459587)
chr1 (29-129)||(24449584-24449683)
chr1 (36-133)||(14320658-14320755)
chr1 (12-133)||(24684142-24684262)
chr1 (12-133)||(24659241-24659351)
chr1 (29-133)||(5389077-5389176)
chr1 (38-127)||(27031496-27031585)
chr1 (12-78)||(46692523-46692590)
[»] chr3 (22 HSPs)
chr3 (20-133)||(2392152-2392265)
chr3 (20-133)||(2393915-2394028)
chr3 (32-133)||(21343678-21343779)
chr3 (29-125)||(9583710-9583806)
chr3 (29-133)||(45164181-45164285)
chr3 (20-133)||(19176825-19176938)
chr3 (6-127)||(40023224-40023345)
chr3 (12-133)||(47236009-47236130)
chr3 (9-133)||(31483188-31483312)
chr3 (9-133)||(34475407-34475531)
chr3 (12-133)||(50305223-50305344)
chr3 (14-111)||(30352110-30352207)
chr3 (29-133)||(53248228-53248332)
chr3 (12-133)||(23327997-23328118)
chr3 (29-121)||(43012705-43012796)
chr3 (70-133)||(47439284-47439347)
chr3 (35-133)||(45399119-45399217)
chr3 (36-133)||(4463734-4463831)
chr3 (29-126)||(17551285-17551382)
chr3 (55-131)||(37158660-37158735)
chr3 (38-133)||(25506719-25506814)
chr3 (35-127)||(50559978-50560070)
[»] chr8 (23 HSPs)
chr8 (25-129)||(16457128-16457232)
chr8 (12-133)||(12897925-12898046)
chr8 (29-133)||(22773949-22774053)
chr8 (9-133)||(31207011-31207135)
chr8 (12-133)||(32065934-32066054)
chr8 (12-129)||(37986508-37986625)
chr8 (29-133)||(20138754-20138858)
chr8 (12-133)||(24995044-24995165)
chr8 (12-133)||(9519817-9519938)
chr8 (12-133)||(36631134-36631254)
chr8 (13-133)||(15821026-15821145)
chr8 (12-133)||(3584048-3584170)
chr8 (12-130)||(35815896-35816014)
chr8 (28-132)||(35821582-35821685)
chr8 (73-133)||(9659474-9659534)
chr8 (28-133)||(41893052-41893159)
chr8 (97-133)||(34866309-34866345)
chr8 (46-133)||(13538330-13538417)
chr8 (46-133)||(13686057-13686144)
chr8 (12-83)||(27889157-27889228)
chr8 (12-83)||(27947815-27947886)
chr8 (12-78)||(34388711-34388777)
chr8 (46-127)||(38577441-38577522)
[»] chr5 (9 HSPs)
chr5 (12-133)||(18593553-18593674)
chr5 (12-133)||(698678-698799)
chr5 (29-133)||(7452916-7453020)
chr5 (12-133)||(34378410-34378531)
chr5 (20-133)||(7161663-7161776)
chr5 (44-133)||(18313303-18313392)
chr5 (12-133)||(29087789-29087903)
chr5 (29-126)||(5656749-5656846)
chr5 (46-133)||(18255099-18255186)
[»] chr6 (7 HSPs)
chr6 (29-129)||(3117822-3117922)
chr6 (20-133)||(3254276-3254389)
chr6 (6-133)||(10542136-10542262)
chr6 (20-133)||(15944318-15944431)
chr6 (51-133)||(15132489-15132571)
chr6 (36-83)||(33697796-33697843)
chr6 (96-124)||(16598939-16598967)
[»] scaffold0172 (1 HSPs)
scaffold0172 (28-132)||(19244-19349)
[»] scaffold0085 (1 HSPs)
scaffold0085 (29-133)||(48663-48767)
[»] scaffold0343 (1 HSPs)
scaffold0343 (12-127)||(6016-6131)
[»] scaffold0434 (1 HSPs)
scaffold0434 (12-110)||(2345-2443)
[»] scaffold0068 (1 HSPs)
scaffold0068 (77-133)||(35473-35529)


Alignment Details
Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 387487 - 387693
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||| |||  |||||| ||||||| |||||| |||||||||||||| ||||||||||||| |||| ||| |||| |  | ||||||| |||||    
T  387487 gtttatcttcatgggtgtttttaagtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccctgcgacttgcggtgatga 387586  T
Q  112 cgtttaataatatttgccgattnnnnnnnnnnnntcagtcatgcaatagccaaaatcaagaaagtttggtacaaattattaggttgatgtaaatgtaatt 211  Q
    ||||||||||||| || |||||              ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  387587 cgtttaataatatctgtcgattaaaaaaaaaaaaaaagttatgcaatagccaaaatcaagaaagtttggtacaaattattaggttcatgtaaatgtaatc 387686  T
Q  212 catctca 218  Q
    |||||||    
T  387687 catctca 387693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 39 - 133
Target Start/End: Complemental strand, 14437010 - 14436916
Alignment:
Q  39 gttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||| |||||| |||||||||||||| ||||||||||||| |||| ||| ||||||  |||||||||||||| ||||||||||||||||| ||||    
T  14437010 gttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgctgatt 14436916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 39338631 - 39338510
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||| ||||||||| |||||| |||||||||||||| ||||||||||||| |||| ||| ||| ||  ||||| ||  ||||     
T  39338631 gtttatcttcaggggtgttttcaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacattgcgtcttacgatgatgg 39338532  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||||||||    
T  39338531 cgtttaataatatttgccgatt 39338510  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 5254590 - 5254684
Alignment:
Q  38 ggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||| |||||| |||||||||||||| |||||||||||| ||| | ||| ||||||| |||||||| ||||||||||||||||||||||| ||||    
T  5254590 ggttatggtgtaccgtctatatgcggcaccatttgtatctattt-cgtccataccttacgtcttgcgaggatgacgtttaataatatttgctgatt 5254684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 7874584 - 7874709
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    |||||||||  ||||||| ||| || |||||||| |||||| |||||||||||||| ||||||||||||| |||  ||  |||||| ||||||||| |||    
T  7874584 tgagtttatattcaggggctttgtttggtggttatggtgtaccgtctatatgcggcgccatttgtatcttgttttgtctataccttgtgtcttgcgagga 7874683  T
Q  109 tgacg-tttaataatatttgccgatt 133  Q
    || || ||||||||||||||| ||||    
T  7874684 tggcgttttaataatatttgctgatt 7874709  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 10524409 - 10524529
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||||||| |||||| | ||||||||| || |||||||||| || |||| ||| ||||||  ||||||| ||| ||     
T  10524409 gtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgctgcaccatttgtatattgtttcgtccataccttgcgtcttgcaggg-tgg 10524507  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||||||||    
T  10524508 cgtttaataatatttgccgatt 10524529  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 43248958 - 43248882
Alignment:
Q  51 cgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttg 127  Q
    |||||||||||||| |||||| |||||| |||| ||| |||||| ||||||| | ||||||||||||||||||||||    
T  43248958 cgtctatatgcggcgccatttatatcttgtttcgtccataccttgtgtcttgtgaggatgacgtttaataatatttg 43248882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 14405520 - 14405630
Alignment:
Q  22 aggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataa 121  Q
    ||||| ||| ||||||||||| |||||| ||||||||||| || ||||||||||| || ||| | | ||||||| ||||||| || || |||||||||||    
T  14405520 aggggctttgttaggtggttatggtgtaccgtctatatgcagcaccatttgtatc-ttgttcgttcataccttacgtcttgcaggaataacgtttaataa 14405618  T
Q  122 tatttgccgatt 133  Q
    ||||||| ||||    
T  14405619 tatttgctgatt 14405630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 41877322 - 41877207
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||| ||||||||| |||||| ||||||||| |||  |||||||||| || |||| ||| || |||  ||||||||||||||     
T  41877322 gtttatcttcaggggtgttttcaggtggttatggtgtaccgtctatatacggtaccatttgtatattgtttcgtccatatcttgcgtcttgcggggatgg 41877223  T
Q  112 cgtttaataatatttg 127  Q
     |||||||||||||||    
T  41877222 agtttaataatatttg 41877207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 43816191 - 43816096
Alignment:
Q  38 ggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||| |||||| ||||||||||||||  ||||||||  || |||| ||| ||||||  || ||||||| ||||||||||||||||||||||||||    
T  43816191 ggttatggtgtaccgtctatatgcggcatcatttgtactttgtttcgtccataccttgcgttttgcgggaatgacgtttaataatatttgccgatt 43816096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 9823695 - 9823761
Alignment:
Q  67 catttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||||||||||| |||||| | |||||| |||||||||| |||| ||||||||||||||||||||||    
T  9823695 catttgtatcttgtttcattcataccttgtgtcttgcggagatggcgtttaataatatttgccgatt 9823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 3745676 - 3745773
Alignment:
Q  36 gtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||||| | |||| | ||||||||| || ||||||||||||| |||| ||| ||||||  |||||  ||||||||| ||||||||||||||||||||    
T  3745676 gtggttatgatgtaccatctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttatggggatgacatttaataatatttgccgatt 3745773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 15457817 - 15457893
Alignment:
Q  56 atatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgat 132  Q
    ||||||||| ||||||||||||| |||| ||| || | |  |||||||||||||||||||||||| |||||||||||    
T  15457817 atatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaatattatttgccgat 15457893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 14106289 - 14106172
Alignment:
Q  14 ttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacg 113  Q
    ||||| ||||||| || ||| |||||||| |||||| |||||||||||||| |||||| |||||| |||| | | |||| |  |||||||| ||||| ||    
T  14106289 ttatcttcaggggcttgttt-ggtggttatggtgtaccgtctatatgcggcaccatttctatcttgtttcgt-cataccctgcgtcttgcgaggatggcg 14106192  T
Q  114 tttaataatatttgccgatt 133  Q
    ||||||||||||||| ||||    
T  14106191 tttaataatatttgctgatt 14106172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 117
Target Start/End: Complemental strand, 17116635 - 17116553
Alignment:
Q  35 ggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgttta 117  Q
    ||||||||  ||||| ||||||||||||||  |||||||||||| | || ||| ||||||  |||||||||||||||||||||    
T  17116635 ggtggttatagtgtaccgtctatatgcggcatcatttgtatcttgtctcgtccataccttgcgtcttgcggggatgacgttta 17116553  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 13512584 - 13512495
Alignment:
Q  37 tggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatattt 126  Q
    |||||| | |||| ||||||||||||||  ||||||||| || |||| ||| ||| ||  |||||||||| |||||||||||||||||||    
T  13512584 tggttatgttgtaccgtctatatgcggcatcatttgtattttgtttcgtccatacattgcgtcttgcgggaatgacgtttaataatattt 13512495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 45311550 - 45311453
Alignment:
Q  36 gtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||||| |||||  ||| |||||| ||| ||||||||||||| |||| ||| | ||||   |||||||||| || |||||||||||||| |||||||    
T  45311550 gtggttatggtgttccgtatatatgtggcaccatttgtatcttgtttcgtcctttccttgcatcttgcggggttggcgtttaataatattggccgatt 45311453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 7461071 - 7461107
Alignment:
Q  97 gtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||||||||||||||||||||||||||||||| ||||    
T  7461071 gtcttgcggggatgacgtttaataatatttgctgatt 7461107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 7455602 - 7455676
Alignment:
Q  51 cgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatattt 126  Q
    ||||||| |||||| ||||||||||||| |||| | | |||||   |||||||||||||||||||||||| |||||    
T  7455602 cgtctatttgcggcaccatttgtatcttatttcgttcatacctgc-gtcttgcggggatgacgtttaatattattt 7455676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 25281031 - 25280964
Alignment:
Q  66 ccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||||| |||||| |||| ||| |||| |  |||||| ||||||||||||||||||||||| ||||||    
T  25281031 ccatttatatcttgtttcgtccataccctgcgtcttgtggggatgacgtttaataatattttccgatt 25280964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 31971905 - 31971784
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||||||| |||||| |||||||||||||| ||||||||||||| |||| ||| ||||||  ||||||||||||||     
T  31971905 gtttatcttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgg 31971806  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||||||||    
T  31971805 cgtttaataatatttgccgatt 31971784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 5860036 - 5859932
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| |||||||||||||| ||||||||||||| |||| ||| || | |  ||||||||||||||||||||||||||||||||    
T  5860036 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatatcatgcgtcttgcggggatgacgtttaataatatttgc 5859937  T
Q  129 cgatt 133  Q
    |||||    
T  5859936 cgatt 5859932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 47325638 - 47325534
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| ||||||||||| || ||||||||||||| |||| ||| ||||||  ||||| || |||||||||||||||||||||||    
T  47325638 tttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttgcgtcttacgaggatgacgtttaataatatttgc 47325539  T
Q  129 cgatt 133  Q
    |||||    
T  47325538 cgatt 47325534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 10244493 - 10244612
Alignment:
Q  14 ttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacg 113  Q
    ||||| |||||||  |||||||||||||| ||||||  ||||||||||||| ||||||||||||| |||| ||| ||||||  ||||||||| ||||  |    
T  10244493 ttatcttcaggggtgtttttaggtggttatggtgtactgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggagatggag 10244592  T
Q  114 tttaataatatttgccgatt 133  Q
    ||||||||||||||||||||    
T  10244593 tttaataatatttgccgatt 10244612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 34391493 - 34391614
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||||||| ||| || |||||||| |||||||||||||||||||||   ||||||||||| |||| ||| |||| |  ||| |||||||||||    
T  34391493 gtttatcttcaggggctttgtttggtggttatggtgtatcgtctatatgcggcattatttgtatcttgtttcgtccataccctgcgtcctgcggggatga 34391592  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||| ||||    
T  34391593 cgtttaataatatttgctgatt 34391614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 25161136 - 25161240
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| ||||||||| |||| ||||||| ||||| |||| | | |||||||  |||| ||||||||||||||||||||||||||    
T  25161136 tttttaggtggttatggtgtaccgtctatatacggcaccatttgcatcttgtttcgttcataccttaaatcttacggggatgacgtttaataatatttgc 25161235  T
Q  129 cgatt 133  Q
    |||||    
T  25161236 cgatt 25161240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 44353317 - 44353213
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| | |||||||||||| ||||||||||||| |||| ||| ||| ||  |||||||||||||| ||||||||||||||| |    
T  44353317 tttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttac 44353218  T
Q  129 cgatt 133  Q
    |||||    
T  44353217 cgatt 44353213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 3867423 - 3867545
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    |||||||||| |||||||  |||||| || |||| |||||| |||||||||| ||| ||||||||||||| |||| ||  ||||||| ||||||| ||||    
T  3867423 tgagtttatcttcaggggtgtttttatgttgttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtcaataccttacgtcttgc-ggga 3867521  T
Q  109 tgacgtttaataatatttgccgat 132  Q
    ||| ||||||||||||||||||||    
T  3867522 tgaagtttaataatatttgccgat 3867545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 3419170 - 3419048
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    |||||||||| ||||| |  |||||||||||||| |||||| |||||||  |||||  | |||||||||| |||| ||| ||||||  ||||||||||||    
T  3419170 tgagtttatcttcaggagtgtttttaggtggttatggtgtaccgtctat--gcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcgggga 3419073  T
Q  109 tgacgtttaataatatttgccgatt 133  Q
    ||||||||||||||||||| |||||    
T  3419072 tgacgtttaataatatttgtcgatt 3419048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 6585198 - 6585318
Alignment:
Q  13 tttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgac 112  Q
    |||||| ||||||| ||| || |||||||| |||||| |||||||||| ||| ||||||||||||| |||| ||| | ||||   ||||||||||||| |    
T  6585198 tttatcttcaggggttttgtttggtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccattccttgcatcttgcggggatggc 6585297  T
Q  113 gtttaataatatttgccgatt 133  Q
    |||||||||||||||| ||||    
T  6585298 gtttaataatatttgctgatt 6585318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 48161808 - 48161690
Alignment:
Q  14 ttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacg 113  Q
    ||||| ||||||| ||| ||||||||||| |||||  |||||||||||||| | |||||||| ||| ||| ||| || ||| |||||||| |||||||||    
T  48161808 ttatcttcaggggctttgttaggtggttatggtgtgccgtctatatgcggcactatttgtat-tttgttcgtccatatcttgtgtcttgcagggatgacg 48161710  T
Q  114 tttaataatatttgccgatt 133  Q
    ||||||||||||||| ||||    
T  48161709 tttaataatatttgctgatt 48161690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 42454488 - 42454383
Alignment:
Q  28 ttttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttg 127  Q
    ||||||||||||||| ||||||  ||||||||||||| ||||||||| ||| |||| ||  || |||  ||||||||||||||| |||||||||||||||    
T  42454488 ttttttaggtggttatggtgtactgtctatatgcggcaccatttgtaccttgtttcgtctatatcttgcgtcttgcggggatgatgtttaataatatttg 42454389  T
Q  128 ccgatt 133  Q
    | ||||    
T  42454388 ctgatt 42454383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 33434584 - 33434480
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| ||||||||| | |  |||||||||||||  ||| ||| ||||||  || ||||||||||| |||||||||||||||||    
T  33434584 tttttaggtggttatggtgtaccgtctatatacagaaccatttgtatcttgcttcgtccataccttgcgtattgcggggatggcgtttaataatatttgc 33434485  T
Q  129 cgatt 133  Q
    |||||    
T  33434484 cgatt 33434480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 41089496 - 41089396
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| |||||||||||||| ||| ||||||||| |||| ||| |||||  |||||||| | |||| | |||||||||||||||    
T  41089496 tttttaggtggttatggtgtaccgtctatatgcggcacca-ttgtatcttgtttcgtccatacct--tgtcttgcagagatggcatttaataatatttgc 41089400  T
Q  129 cgat 132  Q
    ||||    
T  41089399 cgat 41089396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 37795307 - 37795426
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||| |||  |||||||||||||| |||||| ||| ||   ||| | ||||||||||||| |||| ||| ||||||  |||||| ||||| ||    
T  37795307 gtttatcttcatgggtgtttttaggtggttatggtgtaccgtttaatcgcgacaccatttgtatcttgtttcgtccataccttgcgtcttgtggggacga 37795406  T
Q  112 cgtttaataatatttgccga 131  Q
    ||||||||||||||||||||    
T  37795407 cgtttaataatatttgccga 37795426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 37795635 - 37795754
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||| |||  |||||||||||||| |||||| ||| ||   ||| | ||||||||||||| |||| ||| ||||||  |||||| ||||| ||    
T  37795635 gtttatcttcatgggtgtttttaggtggttatggtgtaccgtttaatcgcgacaccatttgtatcttgtttcgtccataccttgcgtcttgtggggacga 37795734  T
Q  112 cgtttaataatatttgccga 131  Q
    ||||||||||||||||||||    
T  37795735 cgtttaataatatttgccga 37795754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 38306571 - 38306653
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctacctt 94  Q
    ||||||| | |||||  |||||||||||||| |||||| |||||||||||||| ||||||||||||| |||| ||| ||||||    
T  38306571 gtttatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatacctt 38306653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 3419429 - 3419321
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    |||||||||| ||||| |  |||||||||||||| |||||| |||||||  |||||  | |||||||||| |||| ||| ||||||  ||||||||||||    
T  3419429 tgagtttatcttcaggagtgtttttaggtggttatggtgtaccgtctat--gcggcaacgtttgtatcttgtttcgtccataccttgcgtcttgcgggga 3419332  T
Q  109 tgacgtttaat 119  Q
    || ||||||||    
T  3419331 tggcgtttaat 3419321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 43482233 - 43482331
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||  |||||| ||||| ||||| || | ||||||||||| |||| ||| ||||||  ||| | ||||||||||||||||||||||||||    
T  43482233 tttttaggtggttgtggtgtaccgtctgtatgcagcactatttgtatcttatttcgtccataccttgcgtc-tacggggatgacgtttaataatatttgc 43482331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 40726202 - 40726140
Alignment:
Q  71 tgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||||||| |||| ||| ||||||  |||||||||||||||| ||||||||||||||||||||    
T  40726202 tgtatcttgtttcgtccataccttgcgtcttgcggggatgacatttaataatatttgccgatt 40726140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 11378866 - 11378772
Alignment:
Q  36 gtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccga 131  Q
    ||||||| |||||| ||| ||||||||||  ||| |||||||| || | ||| ||||||  ||||||||||| || ||||||||||||||||||||    
T  11378866 gtggttatggtgtaccgtttatatgcggcatcatctgtatcttatt-cgtccataccttgcgtcttgcggggttggcgtttaataatatttgccga 11378772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 35745548 - 35745481
Alignment:
Q  66 ccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||||||||||| |||| ||| ||||||  || || ||| |||||||||||||||||||||| ||||    
T  35745548 ccatttgtatcttgtttcgtccataccttgcgttttacggagatgacgtttaataatatttgctgatt 35745481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 7703018 - 7703118
Alignment:
Q  32 ttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccga 131  Q
    ||||||||||| |||||| |||||||||||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  7703018 ttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttttt-catccataccttgtgtcttgcggggatgacgtttaataatatttgccga 7703116  T
Q  132 tt 133  Q
    ||    
T  7703117 tt 7703118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 35329318 - 35329439
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||| |||  |||||||||||||| |||||| ||||||||||| || ||||||||||||| |||| ||| ||||||| ||||||||||||||     
T  35329318 gtttatcttcatgggtatttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttacgtcttgcggggatgg 35329417  T
Q  112 cgtttaataatatttgccgatt 133  Q
    |||||| |||||||||||||||    
T  35329418 cgtttactaatatttgccgatt 35329439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 27555701 - 27555579
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgc-ggggatg 110  Q
    ||||||| |||||||  |||||||||||||| |||||| | |||||||||||| | ||||||||||| |||| ||| ||||||  ||||||| |||||||    
T  27555701 gtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgcggcacaatttgtatcttgtttcgtccataccttgcgtcttgcgggggatg 27555602  T
Q  111 acgtttaataatatttgccgatt 133  Q
     ||||||||||||||||||||||    
T  27555601 gcgtttaataatatttgccgatt 27555579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 4306032 - 4306136
Alignment:
Q  28 ttttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttg 127  Q
    ||||||||||||||| |||||| |||||||||||||| |||||| |||| |||||| | | ||||||  ||||| |||||||||| ||||||||||||||    
T  4306032 ttttttaggtggttatggtgtaccgtctatatgcggcaccatttatatc-tttttcgttcataccttgcgtcttccggggatgacatttaataatatttg 4306130  T
Q  128 ccgatt 133  Q
    ||||||    
T  4306131 ccgatt 4306136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 8255335 - 8255459
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    |||||||||| ||||| |  |||||||||||||| | |||| ||||||||||||||  |||||||||||| | || |||  ||||||| |||||||| ||    
T  8255335 tgagtttatcttcaggagtgtttttaggtggttatgatgtaccgtctatatgcggcatcatttgtatcttgtctcgtccacaccttatatcttgcggaga 8255434  T
Q  109 tgacgtttaataatatttgccgatt 133  Q
    |  ||||||||||||||||||||||    
T  8255435 tagcgtttaataatatttgccgatt 8255459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 8268753 - 8268877
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    |||||||||| ||||| |  |||||||||||||| | |||| ||||||||||||||  |||||||||||| | || |||  ||||||| |||||||| ||    
T  8268753 tgagtttatcttcaggagtgtttttaggtggttatgatgtaccgtctatatgcggcatcatttgtatcttgtctcgtccacaccttatatcttgcggaga 8268852  T
Q  109 tgacgtttaataatatttgccgatt 133  Q
    |  ||||||||||||||||||||||    
T  8268853 tagcgtttaataatatttgccgatt 8268877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 46698525 - 46698428
Alignment:
Q  36 gtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||||| |||||| |||||||||||||| ||||||||||||| ||||  || ||||||  ||||| |  ||||||||||||||||||||||| ||||    
T  46698525 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgaccataccttgcgtctttcatggatgacgtttaataatatttgctgatt 46698428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 49528429 - 49528514
Alignment:
Q  44 ggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgcc 129  Q
    |||||| |||||||||||||| ||||||||||||| |||| ||| |||||||||| |||||||| ||  ||||||| |||||||||    
T  49528429 ggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttatgttttgcggggttggtgtttaatgatatttgcc 49528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 8705893 - 8705789
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| ||||||||||| || ||||||||||| |   || ||| |||||   ||||||  ||||||||||||||||||||||||    
T  8705893 tttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcctgcctcgtccatacctcgcgtcttgaagggatgacgtttaataatatttgc 8705794  T
Q  129 cgatt 133  Q
    |||||    
T  8705793 cgatt 8705789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 30964765 - 30964869
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| |||||||||||  |  |||||||||||| |||| ||| ||||||  ||||||| ||||||  |||||||||||||||     
T  30964765 tttttaggtggttatggtgtaccgtctatatgcaacatcatttgtatcttgtttcgtccataccttgcgtcttgcagggatggtgtttaataatatttgt 30964864  T
Q  129 cgatt 133  Q
    |||||    
T  30964865 cgatt 30964869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 2826118 - 2826213
Alignment:
Q  38 ggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||| |||||| ||| |||||||||| ||||||||||||| || | ||| ||||||  ||||||| | |||||||||||||||||||||| ||||    
T  2826118 ggttatggtgtaccgtatatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgcagagatgacgtttaataatatttgctgatt 2826213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 9750117 - 9750198
Alignment:
Q  51 cgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||||||||||||| ||||||||||||| |||| |||  ||||   ||||||||||||||||||||||||||||||| |||||    
T  9750117 cgtctatatgcggcaccatttgtatcttgtttcgtccaaacctgc-gtcttgcggggatgacgtttaataatatttgtcgatt 9750198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 20464900 - 20465005
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||||||| |||||| ||||||||| |||| ||||||||||||| |||| | | ||||||   ||||| | ||||||    
T  20464900 gtttatcttcaggggtgtttttaggtggttatggtgtaccgtctatatacggcaccatttgtatcttgtttctttcataccttgcatcttgtgaggatga 20464999  T
Q  112 cgttta 117  Q
    ||||||    
T  20465000 cgttta 20465005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 35341097 - 35341006
Alignment:
Q  38 ggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgc--ggggatgacgtttaataatatttg 127  Q
    ||||| |||||| |||||||||| ||| ||||||||||||| |||| ||| ||| ||  |||||||  ||||||||||||||||||||||||    
T  35341097 ggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccatacattgcgtcttgcggggggatgacgtttaataatatttg 35341006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 36689578 - 36689454
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    |||||||||| |||||||  |||||| |||||||  ||||| ||||||||||||   ||||||||||||| |||| ||| |||||   ||||||||| ||    
T  36689578 tgagtttatcttcaggggtgtttttaagtggttatagtgtaccgtctatatgcgataccatttgtatcttatttcgtccatacctcgcgtcttgcggaga 36689479  T
Q  109 tgacgtttaataatatttgccgatt 133  Q
    ||   |||||||||||||| |||||    
T  36689478 tggtatttaataatatttgtcgatt 36689454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 30167278 - 30167212
Alignment:
Q  67 catttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||||||||||| |||| ||| ||||||  |||||||| |||||||||||||||||||||| |||||    
T  30167278 catttgtatcttgtttcgtccataccttgcgtcttgcgaggatgacgtttaataatatttgtcgatt 30167212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 31050408 - 31050315
Alignment:
Q  35 ggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||| |||||| |||||||||||| |  |||||||||||| |||| ||| ||| |    ||||||||||| |||||||||||||||||||    
T  31050408 ggtggttatggtgtaccgtctatatgcgacatcatttgtatcttgtttcgtccatacatcgcatcttgcggggacgacgtttaataatatttgc 31050315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 11281478 - 11281375
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| ||| || ||||||||| | || |||||| |||| | |||| ||| || |||  |||||| || ||||||||| ||||||||||||    
T  11281478 tttttaggtggttatggtataccgtctatatacagcaccatttatatcatgtttcgtccatatcttgcgtcttgtggagatgacgttcaataatatttgc 11281379  T
Q  129 cgat 132  Q
    ||||    
T  11281378 cgat 11281375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 52868859 - 52868766
Alignment:
Q  35 ggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacg-tttaataatatttg 127  Q
    |||||||| |||||| |||||||| ||| | |||||||||||||  ||| | | ||||||| |||||| |  ||||||| ||||||||||||||    
T  52868859 ggtggttatggtgtaccgtctatacgcgacaccatttgtatcttaattcgttcataccttacgtcttgtgaagatgacgttttaataatatttg 52868766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 30685694 - 30685573
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||||||| |||||| | |||||||||||| ||||||||||||| |||| ||| ||||||  |||||||||||||||    
T  30685694 gtttatcttcaggggtgtttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatga 30685595  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||||||||    
T  30685594 cgtttaataatatttgccgatt 30685573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 46814235 - 46814121
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||||||| ||| || |||||||| |||||| |||||||||||||| ||||||||||||| |||| ||| ||||||| |||||||| |||||     
T  46814235 gtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttacgtcttgcgaggatgg 46814136  T
Q  112 cgtttaataatattt 126  Q
    |||||||||||||||    
T  46814135 cgtttaataatattt 46814121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 31584809 - 31584689
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| | | ||||||  |||||||| |||||     
T  31584809 gtttatcttcaggggtgtttttaggtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttcgt-cataccttgcgtcttgcgaggatgg 31584711  T
Q  112 cgtttaataatatttgccgatt 133  Q
     |||||||||||||||||||||    
T  31584710 tgtttaataatatttgccgatt 31584689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 6804865 - 6804969
Alignment:
Q  28 ttttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttg 127  Q
    ||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||| ||| ||||||  |||||||||||||  |||||||||||||||     
T  6804865 ttttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatc-tttttcgtccataccttgcgtcttgcggggatagcgtttaataatattta 6804963  T
Q  128 ccgatt 133  Q
    ||||||    
T  6804964 ccgatt 6804969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 41920768 - 41920889
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||| |||  |||||||||||||| |||||| ||||||||||| || | |||||||| || |||| ||| ||||||| ||||||||| |||||    
T  41920768 gtttatcttcacgggtgtttttaggtggttacggtgtaccgtctatatgcagcacaatttgtattttatttcgtccataccttacgtcttgcggagatga 41920867  T
Q  112 cgtttaataatatttgccgatt 133  Q
    |||||||||||||||| |||||    
T  41920868 cgtttaataatatttgtcgatt 41920889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 7002514 - 7002619
Alignment:
Q  28 ttttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttg 127  Q
    ||||||| ||||||| |||||| ||| |||||||||| || |||||||||| |||| ||| |||||||  | ||||| ||||||||||||||||||||||    
T  7002514 ttttttaagtggttatggtgtaccgtttatatgcggcaccttttgtatcttgtttcgtccataccttacattttgcgaggatgacgtttaataatatttg 7002613  T
Q  128 ccgatt 133  Q
    ||||||    
T  7002614 ccgatt 7002619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 40216259 - 40216155
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| | |||| |||||||||||||| |||||||||||||  ||| ||| || ||   |||||||| |||||||||||||||||||||||    
T  40216259 tttttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgattcgtccatatctggcgtcttgcgaggatgacgtttaataatatttgc 40216160  T
Q  129 cgatt 133  Q
     ||||    
T  40216159 tgatt 40216155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 5459468 - 5459587
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    |||||||||| |||||||  |||||||||||||| |||||| |||||||||||||| |||||||||| ||  ||| ||| ||||||  || |||||||      
T  5459468 tgagtttatcttcaggggtatttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatgttgcttcgtccataccttgcgtattgcggg-- 5459565  T
Q  109 tgacgtttaataatatttgccgatt 133  Q
       ||||||||||||||||| ||||    
T  5459566 ---cgtttaataatatttgctgatt 5459587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 24449683 - 24449584
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||| ||||||| |||||| ||||||||||| || ||||||||||||| |||| ||| ||||||   |||||| |||||| |||||||||||||||||    
T  24449683 tttttatgtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccataccttgcatcttgc-gggatggcgtttaataatatttgc 24449585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 14320658 - 14320755
Alignment:
Q  36 gtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||||| |||||| |||||||||||| | |||||||||| |  |||  ||| ||||||   ||||| ||||||||||||||||||||||||||||||    
T  14320658 gtggttatggtgtaccgtctatatgcgacaccatttgtatttggttttgtccataccttgcatcttgtggggatgacgtttaataatatttgccgatt 14320755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 24684262 - 24684142
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||| ||| |||||| |||||||||| ||| ||||||||||||| |||  | | ||||||   |||||| |||||||    
T  24684262 gtttatcttcaggggtgtttttaggtgattatggtgtaccgtctatatgtggcaccatttgtatcttgttt-gttcataccttgcatcttgcagggatga 24684164  T
Q  112 cgtttaataatatttgccgatt 133  Q
    | | ||||||||||||||||||    
T  24684163 catataataatatttgccgatt 24684142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 24659241 - 24659351
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||||||| ||| || |||||||| |||||| |||||||||||||| ||||||||||||| ||||             |||||||||||||||    
T  24659241 gtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgc-----------gtcttgcggggatga 24659329  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||| ||||    
T  24659330 cgtttaataatatttgctgatt 24659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 5389176 - 5389077
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    ||||||||||||||  ||||  |||||||||||||| ||||||||||||| |||| ||| ||||||  ||     ||||||| ||||||||||||||| |    
T  5389176 tttttaggtggttatagtgtgccgtctatatgcggcaccatttgtatcttatttcgtccataccttgcgt-----ggggatggcgtttaataatattttc 5389082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 27031585 - 27031496
Alignment:
Q  38 ggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttg 127  Q
    ||||| |||||| ||| |||||||||| |||||| ||| || || | ||| || |||  |||||||| ||||||||||||||||||||||    
T  27031585 ggttatggtgtaccgtatatatgcggcaccatttatatattgttccgtccatatcttgcgtcttgcgaggatgacgtttaataatatttg 27031496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 46692590 - 46692523
Alignment:
Q  12 gtttatcgtcagggga-ttttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatctt 78  Q
    ||||||| |||||||  ||||||||||||||| |||||| ||||| |||||||| |||||| ||||||    
T  46692590 gtttatcttcaggggtgttttttaggtggttatggtgtaccgtctttatgcggcaccatttttatctt 46692523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 2392265 - 2392152
Alignment:
Q  20 tcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaat 119  Q
    |||||||  |||||||||||||| |||||| |||||||||||||| ||||||||||||| |||| ||| ||||||  |||||||||||||||||||||||    
T  2392265 tcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaat 2392166  T
Q  120 aatatttgccgatt 133  Q
    ||||||| ||||||    
T  2392165 aatattttccgatt 2392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 2394028 - 2393915
Alignment:
Q  20 tcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaat 119  Q
    |||||||  |||||||||||||| |||||| |||||||||||||| ||||||||||||| |||| ||| ||||||  |||||||||||||||||||||||    
T  2394028 tcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaat 2393929  T
Q  120 aatatttgccgatt 133  Q
    ||||||| ||||||    
T  2393928 aatattttccgatt 2393915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 21343678 - 21343779
Alignment:
Q  32 ttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccga 131  Q
    ||||||||||| | |||| |||||||||||||| ||||||||||||| |||| ||| |||||| |||||||| ||||||||||||||||||||||| |||    
T  21343678 ttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgtgtcttgccgggatgacgtttaataatatttgtcga 21343777  T
Q  132 tt 133  Q
    ||    
T  21343778 tt 21343779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 9583806 - 9583710
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatt 125  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||| ||  |||||| |||||| ||| |||| ||||||||||||||    
T  9583806 tttttaggtggttatggtgtatcgtctatatgcggcaccatttgtatcttgtttcgtctataccttgtgtcttacggagatggcgtttaataatatt 9583710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 45164181 - 45164285
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| |||||||||||||| ||||||||||||| |||  ||| ||||||   |||||||||||| | ||||||||||||||||    
T  45164181 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttagtccataccttgcatcttgcggggataatgtttaataatatttgc 45164280  T
Q  129 cgatt 133  Q
    |||||    
T  45164281 cgatt 45164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 19176825 - 19176938
Alignment:
Q  20 tcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaat 119  Q
    |||||||  ||||||||| |||| |||||| |||||||||||||| ||||||||||| | |||| ||| ||| ||  ||||||| || ||||||||||||    
T  19176825 tcaggggtatttttaggtcgttatggtgtaccgtctatatgcggcaccatttgtatcatgtttcgtccatactttgcgtcttgcaggaatgacgtttaat 19176924  T
Q  120 aatatttgccgatt 133  Q
    ||||||||||||||    
T  19176925 aatatttgccgatt 19176938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 40023345 - 40023224
Alignment:
Q  6 tgatgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgg 105  Q
    ||||| ||||||| ||||||| ||| || |||||||| |||||| ||||||||||||||  |||||||||||| |||| ||| |||  |  |||||||||    
T  40023345 tgatgggtttatcttcaggggctttgtttggtggttatggtgtaccgtctatatgcggcatcatttgtatcttgtttcgtccatacaatgcgtcttgcgg 40023246  T
Q  106 ggatgacgtttaataatatttg 127  Q
    |||||| |||||||||||||||    
T  40023245 ggatgatgtttaataatatttg 40023224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 47236009 - 47236130
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    |||||||  ||||||  ||||||| |||||| ||| || |||||||||||||| ||||||||||||| |||| ||| ||||||  ||||||| ||||||     
T  47236009 gtttatctccaggggtgtttttagatggttatggtataccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcagggatgg 47236108  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||| ||||    
T  47236109 cgtttaataatatttgctgatt 47236130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 31483188 - 31483312
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    ||||||||||  ||||||  |||||||||||||| |||||| ||||||||||| || ||||||||||||| |||  | | ||||||  |||||| |||||    
T  31483188 tgagtttatctccaggggtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgttttgttcataccttgcgtcttgtgggga 31483287  T
Q  109 tgacgtttaataatatttgccgatt 133  Q
    ||  |||||||||||||||||||||    
T  31483288 tggtgtttaataatatttgccgatt 31483312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 34475531 - 34475407
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    ||||||||||  ||||||  || ||||||||||| ||| || |||||||||| ||| ||||||||||||| |||| | | |||| |  ||||||||||||    
T  34475531 tgagtttatctccaggggtgttcttaggtggttatggtataccgtctatatggggcaccatttgtatcttgtttcgttcataccctgcgtcttgcgggga 34475432  T
Q  109 tgacgtttaataatatttgccgatt 133  Q
    |||||||||||||||| ||||||||    
T  34475431 tgacgtttaataatatgtgccgatt 34475407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 50305344 - 50305223
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||||||| ||| || | |||||| |||||| |||||||||||| | ||||||||||||| || | ||| ||||||  |||||||||| |||     
T  50305344 gtttatcttcaggggctttatttgatggttatggtgtaccgtctatatgcgacaccatttgtatcttgttccgtccataccttgcgtcttgcgggaatgg 50305245  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||| ||||    
T  50305244 cgtttaataatatttgctgatt 50305223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 30352207 - 30352110
Alignment:
Q  14 ttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||| |||||||  |||||||||||||| |||||| | |||||||||||| ||||||||||||| |||| ||| ||||||  |||||||||| ||||    
T  30352207 ttatcttcaggggtgtttttaggtggttatggtgtaccttctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgcgggaatga 30352110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 53248228 - 53248332
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    ||||||| |||||| ||||||    ||||||||| | ||||||||||||| |||  ||| ||||||| | |||||||||||||||||||||||||||||     
T  53248228 tttttagatggttatggtgtacaacctatatgcgacaccatttgtatcttgttttgtccataccttacgccttgcggggatgacgtttaataatatttgt 53248327  T
Q  129 cgatt 133  Q
    |||||    
T  53248328 cgatt 53248332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 23328118 - 23327997
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||| ||| ||| || |||||||| |||||| ||| |||||||||| |||||| |||||| |||| ||| ||||||  || |||| |||||      
T  23328118 gtttatcctcaagggctttgtttggtggttatggtgtaccgtatatatgcggcaccatttatatcttgtttcgtccataccttgcgtattgcagggatag 23328019  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||| ||||    
T  23328018 cgtttaataatatttgctgatt 23327997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 121
Target Start/End: Original strand, 43012705 - 43012796
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataa 121  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||| || |||| | | ||||||  |||||||  ||||||| ||||||||    
T  43012705 tttttaggtggttatggtgtatcgtctatatgcggcaccatttgtatattgtttcgttcataccttgcgtcttgc-aggatgacatttaataa 43012796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 47439284 - 47439347
Alignment:
Q  70 ttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||||||| |||| ||| ||||||||||||||  ||||||||||||| |||||||||||||||    
T  47439284 ttgtatcttgtttcgtccataccttatgtcttgtagggatgacgtttagtaatatttgccgatt 47439347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 45399119 - 45399217
Alignment:
Q  35 ggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||||||| |||||| |||||||||||||| || |||||||||| |||| | | |||||   ||||| ||| |||| ||||||||||||||||| ||||    
T  45399119 ggtggttatggtgtaccgtctatatgcggcaccgtttgtatcttgtttcgttcatacctcgcgtctttcggagatgtcgtttaataatatttgctgatt 45399217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 4463831 - 4463734
Alignment:
Q  36 gtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||||| |||| | |||||||||||||| |||||||| | || |||| ||| |  |||  |||||| |||| |||||||||||||||||||||||||    
T  4463831 gtggttatggtgcaccgtctatatgcggcaccatttgtgtgttgtttcgtccatgtcttgcgtcttgtggggttgacgtttaataatatttgccgatt 4463734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 17551285 - 17551382
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatattt 126  Q
    |||||||||||||| ||||||  ||||||||||||| |||||||||| || |||| | | |||| |   |||||| ||||| ||||||||||||||||    
T  17551285 tttttaggtggttatggtgtacagtctatatgcggcaccatttgtattttgtttcgttcataccctgcatcttgcagggataacgtttaataatattt 17551382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 37158660 - 37158735
Alignment:
Q  55 tatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccga 131  Q
    |||||||||| ||||||||||| | |||| ||| ||||||  |||||||||||||| ||||| ||||||||||||||    
T  37158660 tatatgcggcaccatttgtatcctgtttcgtccataccttgcgtcttgcggggatggcgttt-ataatatttgccga 37158735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 25506814 - 25506719
Alignment:
Q  38 ggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||| |||||| |||||||||||||| |||||||||| || |||  |   || |||  ||||||||||||||| ||||||||||||||| |||||    
T  25506814 ggttatggtgtaccgtctatatgcggcaccatttgtatattgttttgtttatatcttgggtcttgcggggatgatgtttaataatatttgtcgatt 25506719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 50559978 - 50560070
Alignment:
Q  35 ggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttg 127  Q
    |||||||| |||| | ||||||| ||||||  | |||||||||| |||| ||| || |||  || ||||| ||||||||||||||||||||||    
T  50559978 ggtggttatggtgcaccgtctatgtgcggcatcttttgtatcttgtttcgtccatatcttgcgtattgcgaggatgacgtttaataatatttg 50560070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 16457232 - 16457128
Alignment:
Q  25 ggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatat 124  Q
    |||||||||||||||||| |||||| |||||||||| ||| ||||||||||||| |||| ||| ||||||| ||||||| ||||||||||||||||||||    
T  16457232 ggattttttaggtggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccataccttacgtcttgcagggatgacgtttaataatat 16457133  T
Q  125 ttgcc 129  Q
    |||||    
T  16457132 ttgcc 16457128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 12898046 - 12897925
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||||| | |||||| |||||||||||||| ||||||||||||| |||| ||| || |||   ||||||||||||||    
T  12898046 gtttatcttcaggggtgtttttaggtggtaatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatatcttgcatcttgcggggatga 12897947  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||||||||    
T  12897946 cgtttaataatatttgccgatt 12897925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 22773949 - 22774053
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    ||||||| |||||| |||||| |||||||||||||| ||||||||||||  |||| ||| ||||||  |||||||||||||| |||||||||||||||||    
T  22773949 tttttagatggttatggtgtaccgtctatatgcggcaccatttgtatctagtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgc 22774048  T
Q  129 cgatt 133  Q
    |||||    
T  22774049 cgatt 22774053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 31207135 - 31207011
Alignment:
Q  9 tgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgggga 108  Q
    |||||||||| ||||| |  |||||||||||||| |||||| ||| ||||| |||| ||||||||||||| |||| ||| ||||||  |||||||| |||    
T  31207135 tgagtttatcttcaggagtgtttttaggtggttatggtgtaccgtttatatacggcaccatttgtatcttgtttcgtccataccttgcgtcttgcgagga 31207036  T
Q  109 tgacgtttaataatatttgccgatt 133  Q
    || ||||||||||||||||||||||    
T  31207035 tggcgtttaataatatttgccgatt 31207011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 32066054 - 32065934
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||||||| | |||| |||||||||||||| ||||||||||||| |||| ||| ||||||   |||||||| ||||     
T  32066054 gtttatcttcaggggtgtttttaggtggttatg-tgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcatcttgcggtgatgg 32065956  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||||||||    
T  32065955 cgtttaataatatttgccgatt 32065934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 37986625 - 37986508
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| | |||||  |||||||||||||| |||||| ||||||||||| || ||||||||||||| |||| ||| | ||||  |||||||||||||||    
T  37986625 gtttatctttaggggtgtttttaggtggttatggtgtaccgtctatatgcagcaccatttgtatcttgtttcgtccgtgccttgcgtcttgcggggatga 37986526  T
Q  112 cgtttaataatatttgcc 129  Q
    | ||||||||||||||||    
T  37986525 catttaataatatttgcc 37986508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 20138754 - 20138858
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| | |||||||||||| ||||||||||||| |||| ||| ||| ||  |||||||||||||| ||||||||||||||| |    
T  20138754 tttttaggtggttatggtgtaccatctatatgcggcaccatttgtatcttgtttcgtccatactttgcgtcttgcggggatggcgtttaataatatttac 20138853  T
Q  129 cgatt 133  Q
    |||||    
T  20138854 cgatt 20138858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 24995165 - 24995044
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||||||| ||||||  ||||||| ||||| ||||||||||||| |||| ||| ||||||  ||||| ||||||||     
T  24995165 gtttatcttcaggggtgtttttaggtggttatggtgtactgtctataagcggcaccatttgtatcttgtttcgtccataccttgcgtcttacggggatgg 24995066  T
Q  112 cgtttaataatatttgccgatt 133  Q
    |||| |||||||||||| ||||    
T  24995065 cgttcaataatatttgctgatt 24995044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 9519817 - 9519938
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||||||| | ||||  ||||||||||||| ||||||||||||| |||| ||| ||||||  ||||||  ||||||     
T  9519817 gtttatcatcaggggtgtttttaggtggttatgatgtactgtctatatgcggcaccatttgtatcttgtttcgtccataccttgcgtcttgtagggatgg 9519916  T
Q  112 cgtttaataatatttgccgatt 133  Q
     ||||||||||||||| |||||    
T  9519917 tgtttaataatatttgtcgatt 9519938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 36631134 - 36631254
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||| ||| |||||| |||||||||||||| ||||||||||||| |||| | | ||||||  ||||||| ||||||     
T  36631134 gtttatcttcaggggtgtttttaggtgattatggtgtaccgtctatatgcggcaccatttgtatcttgtttc-ttcataccttgcgtcttgcagggatgg 36631232  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||| ||||||||||| ||||||    
T  36631233 cgtataataatattttccgatt 36631254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 15821145 - 15821026
Alignment:
Q  13 tttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgac 112  Q
    |||||| ||||||| ||| || |||||||| ||| || |||||||||||||| ||||||||||||| || | ||| ||||||  |||||||  |||||||    
T  15821145 tttatcttcaggggttttatttggtggttatggtataccgtctatatgcggcaccatttgtatcttgttccgtccataccttgcgtcttgc-aggatgac 15821047  T
Q  113 gtttaataatatttgccgatt 133  Q
    |||||||||||||||| ||||    
T  15821046 gtttaataatatttgctgatt 15821026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 3584048 - 3584170
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttt-tttcatccctaccttatgtcttgcggggatg 110  Q
    ||||||| | ||||| ||| || |||||||| |||||| |||||||||||||| |||||||||||||| |||| | | |||||   |||||| |||||||    
T  3584048 gtttatcttaaggggctttgtttggtggttatggtgtaccgtctatatgcggcaccatttgtatctttgtttcgttcatacctcgcgtcttgtggggatg 3584147  T
Q  111 acgtttaataatatttgccgatt 133  Q
     ||||||||||||||||| ||||    
T  3584148 gcgtttaataatatttgctgatt 3584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 35816014 - 35815896
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||| ||| ||| || || ||||| |||||| |||||||||| ||| ||||||||||||| |||| ||| ||||||  || ||||| |||||     
T  35816014 gtttatcttcatgggctttgtttgggggttatggtgtaccgtctatatgtggcaccatttgtatcttgtttcgtccataccttgcgttttgcgaggatgg 35815915  T
Q  112 cgtttaataatatttgccg 130  Q
    |||||||||||||||||||    
T  35815914 cgtttaataatatttgccg 35815896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 35821582 - 35821685
Alignment:
Q  28 ttttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttg 127  Q
    ||||||| ||||||| |||||| ||||||||||||||  |||||||||| | |||| ||| | ||||  ||||||||| |||| ||||||||||||||||    
T  35821582 ttttttaagtggttatggtgtaccgtctatatgcggcatcatttgtatcatgtttcgtccat-ccttgcgtcttgcggagatggcgtttaataatatttg 35821680  T
Q  128 ccgat 132  Q
    |||||    
T  35821681 ccgat 35821685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 9659474 - 9659534
Alignment:
Q  73 tatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||||| |||| ||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  9659474 tatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaataatatttgccgatt 9659534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 41893159 - 41893052
Alignment:
Q  28 ttttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatg---tcttgcggggatgacgtttaataatat 124  Q
    ||||||||||||||| |||||| |||||||||||| | |||||||||| ||||||| | | |||||| ||   ||||  ||||| |||||||||||||||    
T  41893159 ttttttaggtggttatggtgtaccgtctatatgcgacaccatttgtat-ttttttcgttcataccttgtgacatcttatggggacgacgtttaataatat 41893061  T
Q  125 ttgccgatt 133  Q
    ||| |||||    
T  41893060 ttgtcgatt 41893052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 34866345 - 34866309
Alignment:
Q  97 gtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||||||||||||||||||||||||||||||||||||    
T  34866345 gtcttgcggggatgacgtttaataatatttgccgatt 34866309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 13538330 - 13538417
Alignment:
Q  46 tgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||| |||||||||||||  |||||||||| || |||| ||| ||||||  |||||| || |||| ||||||||||||||||| ||||    
T  13538330 tgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgatt 13538417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 13686144 - 13686057
Alignment:
Q  46 tgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||| |||||||||||||  |||||||||| || |||| ||| ||||||  |||||| || |||| ||||||||||||||||| ||||    
T  13686144 tgtaccgtctatatgcggtaccatttgtatattctttcgtccataccttgcgtcttgtggagatggcgtttaataatatttgctgatt 13686057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 27889157 - 27889228
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttc 83  Q
    |||||||  ||||||  |||||||||||||| ||||||  ||||||||||||| ||||||||||||| ||||    
T  27889157 gtttatctccaggggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttc 27889228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 27947815 - 27947886
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttc 83  Q
    |||||||  ||||||  |||||||||||||| ||||||  ||||||||||||| ||||||||||||| ||||    
T  27947815 gtttatctccaggggtgtttttaggtggttatggtgtacagtctatatgcggcaccatttgtatcttgtttc 27947886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 34388777 - 34388711
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatctt 78  Q
    ||||||| ||| |||  |||||||||||||| |||||| ||||||||||| || | |||||||||||    
T  34388777 gtttatcttcacgggtgtttttaggtggttatggtgtaccgtctatatgcagcactatttgtatctt 34388711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 38577522 - 38577441
Alignment:
Q  46 tgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttg 127  Q
    |||| ||||||||||||||  ||||||||| || |||| | | ||| |||  ||||||||  ||||||||||||||||||||    
T  38577522 tgtaccgtctatatgcggcatcatttgtatattgtttcgttcatacattacatcttgcggaaatgacgtttaataatatttg 38577441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 18593553 - 18593674
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  |||||||||||||| |||||| |||||||||||||| |||| | |||||| |||| ||| ||||||   ||||||||||||||    
T  18593553 gtttatcttcaggggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatatttatcttgtttcgtccataccttgcatcttgcggggatga 18593652  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||||||||    
T  18593653 cgtttaataatatttgccgatt 18593674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 698678 - 698799
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||| |||  ||||||||||||||  ||||| |||||||||||||| ||||||||||| | |||||||| ||||||| ||||||| | ||||     
T  698678 gtttatcttcaagggtgtttttaggtggttatagtgtaccgtctatatgcggcaccatttgtatcatatttcatccataccttacgtcttgcagagatgt 698777  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||||| ||||    
T  698778 cgtttaataatatttgctgatt 698799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 7452916 - 7453020
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||||||  ||  ||| ||||||  |||||||  |||||| ||||||||||||||||    
T  7452916 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgatttgtccataccttgcgtcttgcatggatgatgtttaataatatttgc 7453015  T
Q  129 cgatt 133  Q
    |||||    
T  7453016 cgatt 7453020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 34378410 - 34378531
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||||||  ||||||| |||||| |||||| |||||||||||||| ||||||||||||  | || ||| | ||||  ||||||||| ||||     
T  34378410 gtttatcttcaggggtgtttttagatggttatggtgtaccgtctatatgcggcaccatttgtatctcgtctcgtccatgccttgcgtcttgcggagatgg 34378509  T
Q  112 cgtttaataatatttgccgatt 133  Q
    |||||||||||||||| |||||    
T  34378510 cgtttaataatatttgtcgatt 34378531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 7161776 - 7161663
Alignment:
Q  20 tcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaat 119  Q
    |||||||  |||||||||| ||| |||||| |||||||||||  | | ||||||||||| |||| ||| || |||  |||||| ||||| ||||||||||    
T  7161776 tcaggggtgtttttaggtgattatggtgtaccgtctatatgctacactatttgtatcttatttcgtccatatcttgcgtcttgtggggaagacgtttaat 7161677  T
Q  120 aatatttgccgatt 133  Q
    ||||||||||||||    
T  7161676 aatatttgccgatt 7161663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 18313392 - 18313303
Alignment:
Q  44 ggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||||| |||||||||||||| ||||||| ||||| |||||||| ||||||  ||||| | || ||||||||||||||||||| ||||||    
T  18313392 ggtgtaccgtctatatgcggcaccatttgcatcttgtttcatccataccttgcgtcttacaggaatgacgtttaataatatttaccgatt 18313303  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 29087789 - 29087903
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| ||||||   |||||||||||||| | |||| |||||||||||||| ||||||||||||| |||| ||| |||       ||||| |||||||    
T  29087789 gtttatcttcagggttgtttttaggtggttatgatgtaccgtctatatgcggcaccatttgtatcttgtttcgtccatac-------cttgcagggatga 29087881  T
Q  112 cgtttaataatatttgccgatt 133  Q
    ||||||||||||||| ||||||    
T  29087882 cgtttaataatattttccgatt 29087903  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 5656846 - 5656749
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatattt 126  Q
    ||||||||||||||   |||| ||||||||||||||  |||||||||||| |||| | | ||||||  ||||||||| |||| |||||||||||||||    
T  5656846 tttttaggtggttatcatgtaccgtctatatgcggcatcatttgtatcttatttcgttcataccttgcgtcttgcggtgatggcgtttaataatattt 5656749  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 18255186 - 18255099
Alignment:
Q  46 tgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    |||| |||||||||||||| | ||||||||||| |||| ||  |||| |   |||| ||||||| |||||||| ||||||||||||||    
T  18255186 tgtaccgtctatatgcggcactatttgtatcttgtttcgtctataccctgcatcttacggggataacgtttaacaatatttgccgatt 18255099  T

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Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 3117822 - 3117922
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| ||||||||||| || ||||||||||||| |||| ||| ||||||| ||||||| || |||||||||||||||||||||    
T  3117822 tttttaggtggttatggtgtagcgtctatatgctgcaccatttgtatcttatttcgtccataccttacgtcttgcaggaatgacgtttaataatatttgc 3117921  T
Q  129 c 129  Q
    |    
T  3117922 c 3117922  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 3254276 - 3254389
Alignment:
Q  20 tcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaat 119  Q
    |||||||  ||||||||||| || ||||||   ||||||| |||| ||||||||||||| |||| ||| ||||||  |||||||||||||||||||||||    
T  3254276 tcaggggtgtttttaggtggctatggtgtactatctatatacggcaccatttgtatcttgtttcgtccataccttgcgtcttgcggggatgacgtttaat 3254375  T
Q  120 aatatttgccgatt 133  Q
    ||||||||||||||    
T  3254376 aatatttgccgatt 3254389  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 133
Target Start/End: Original strand, 10542136 - 10542262
Alignment:
Q  6 tgatgagtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcgg 105  Q
    ||||| ||||||| |||||||  |||||||||||||| ||||||||||||||||||||| || |||||||||| |||| | | || |||   |||||| |    
T  10542136 tgatgggtttatcttcaggggtgtttttaggtggttatggtgtatcgtctatatgcggcaccttttgtatcttgtttcgttcatatcttgcatcttgc-g 10542234  T
Q  106 ggatgacgtttaataatatttgccgatt 133  Q
    ||||| || |||||||||||| ||||||    
T  10542235 ggatggcgcttaataatattttccgatt 10542262  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 15944318 - 15944431
Alignment:
Q  20 tcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaat 119  Q
    |||||||  |||||||||| ||| |||||| |||||||||||| | ||||||||||||| ||   ||| ||||||  ||||| | |||||| ||||||||    
T  15944318 tcaggggtatttttaggtgtttatggtgtaccgtctatatgcgacaccatttgtatcttcttctgtccataccttgcgtcttacagggatggcgtttaat 15944417  T
Q  120 aatatttgccgatt 133  Q
    ||||||||||||||    
T  15944418 aatatttgccgatt 15944431  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 15132571 - 15132489
Alignment:
Q  51 cgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||||||| ||||  |||||||||||| |||  ||| ||||||| ||||||||  |||| ||||||||||||||||| ||||    
T  15132571 cgtctatatacggcatcatttgtatcttgttttgtccataccttacgtcttgcgatgatggcgtttaataatatttgctgatt 15132489  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 33697843 - 33697796
Alignment:
Q  36 gtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttc 83  Q
    ||||||| |||||| |||||||||||||| ||||||||||||| ||||    
T  33697843 gtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttc 33697796  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 16598967 - 16598939
Alignment:
Q  96 tgtcttgcggggatgacgtttaataatat 124  Q
    |||||||||||||||||||||||||||||    
T  16598967 tgtcttgcggggatgacgtttaataatat 16598939  T

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Target: scaffold0172 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 19244 - 19349
Alignment:
Q  28 ttttttaggtgg-ttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatattt 126  Q
    |||||||||||| ||| |||||| |||||||||||||| ||||||||||||| |||| ||| |||| |  |||||||| |||||||||||||||||||||    
T  19244 ttttttaggtgggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttcgtccataccatgcgtcttgcgaggatgacgtttaataatattt 19343  T
Q  127 gccgat 132  Q
    ||||||    
T  19344 gccgat 19349  T

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Target: scaffold0085 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 48663 - 48767
Alignment:
Q  29 tttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgc 128  Q
    |||||||||||||| |||||| |||||||||||||| ||||||||||||| |||  ||| || ||| ||||||||||||| |||||| ||||||||||||    
T  48663 tttttaggtggttatggtgtaccgtctatatgcggcaccatttgtatcttgtttagtccatatcttgtgtcttgcggggaggacgttgaataatatttgc 48762  T
Q  129 cgatt 133  Q
     ||||    
T  48763 ggatt 48767  T

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Target: scaffold0343 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 6016 - 6131
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatga 111  Q
    ||||||| |||| ||  |||||||||||||| | |||| ||||||||| |||| ||||||||||||| | || | | || |||  |||||||||||||||    
T  6016 gtttatcttcagaggtgtttttaggtggttatgatgtaacgtctatatacggcaccatttgtatcttgtctcgttcatatcttgcgtcttgcggggatga 6115  T
Q  112 cgtttaataatatttg 127  Q
    ||||||||||||||||    
T  6116 cgtttaataatatttg 6131  T

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Target: scaffold0434 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 2443 - 2345
Alignment:
Q  12 gtttatcgtcaggggattttttaggtggttaaggtgtatcgtctatatgcggccccatttgtatcttttttcatccctaccttatgtcttgcggggatg 110  Q
    ||||||| ||| |||  |||||||||||||| |||||| |||||||||||||| |||| |||||||| |||| ||| ||||||  |||||| |||||||    
T  2443 gtttatcttcaagggtgtttttaggtggttatggtgtaccgtctatatgcggcaccatctgtatcttgtttcgtccataccttgcgtcttgtggggatg 2345  T

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Target: scaffold0068 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 35529 - 35473
Alignment:
Q  77 ttttttcatccctaccttatgtcttgcggggatgacgtttaataatatttgccgatt 133  Q
    ||||||| ||| ||||||| ||||| ||||||||||||| |||||||||||||||||    
T  35529 ttttttcgtccataccttacgtcttacggggatgacgttcaataatatttgccgatt 35473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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