View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6363_low_36 (Length: 217)
Name: NF6363_low_36
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_low_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 2460842 - 2460659
Alignment:
| Q |
16 |
atgaacaagcaccatattaaattaattatatgaataatgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2460842 |
atgaacaagcaccatattaaattaattatatgaataatgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattc |
2460743 |
T |
|
| Q |
116 |
aaccaagcctttactgttcatcaagaatccaagcactaaagactcgttgaaaggtactttacatagaagagacactacaatagt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2460742 |
aaccaagcctttactgttcatcaagaatccaagcactaaagactcgttgaaaggtactttacatagaagagacactacaatagt |
2460659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 2449815 - 2449641
Alignment:
| Q |
26 |
accatattaaattaatt-atatgaataatgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattcaaccaagcc |
124 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2449815 |
accatattaaattaatttataggaataatgagagcaagaaaataaactcaaatacctttctatctttaccaatgttgaggacaattaattcaaccaagcc |
2449716 |
T |
|
| Q |
125 |
tttactgttcatcaagaatccaagcactaaagactcgttgaaaggtactttacatagaagagacactacaatagt |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
2449715 |
tttactattcatcaagaatccaagcactaaagactcgttgaaaggtactttacatataagagacacaacaatagt |
2449641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 2445034 - 2444887
Alignment:
| Q |
48 |
aataatgagagcaagaaaatcaattcaaatacctttctatctttaccgatgttgaggacaattaattcaaccaagcctttactgttcatcaagaatccaa |
147 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2445034 |
aatagtgagagcaagaa----aattcaaatacctttcgatctttaccaatgttgaggacaattaattcaaccaagcctttactattcatcaagaatccaa |
2444939 |
T |
|
| Q |
148 |
gcactaaagactcgttgaaaggtactttacatagaagagacactacaatagt |
199 |
Q |
| |
|
||||||||||||| || |||| |||||||||| ||||||||| |||||||| |
|
|
| T |
2444938 |
gcactaaagactcattaaaagacactttacataaaagagacacaacaatagt |
2444887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University