View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_low_38 (Length: 204)
Name: NF6363_low_38
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 12 - 189
Target Start/End: Original strand, 6552477 - 6552654
Alignment:
| Q |
12 |
gataatactacattgaactgtgtgtgctaagactctgatacatcataaggtaacccttaaagtaatgtttgtatagagtttaccaacaactcctatctgt |
111 |
Q |
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| T |
6552477 |
gataatactacattgaactgtgtgtgctaagactctgatacatcataaggtaacccttaaagtaatgtttgtatagagtttaccaacaactcctatttgt |
6552576 |
T |
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| Q |
112 |
cttacaaatttctcaggatagtccttccagaaatggtgttaatcagggaacgcttgaagtatttttatatgattcatc |
189 |
Q |
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| T |
6552577 |
cttacaaatttctcaggatagtccttccagaaatggtgttaatcagggaacgcttgaagtatttttatatgattcatc |
6552654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 49060354 - 49060232
Alignment:
| Q |
68 |
ttaaagtaatgtttgtatagagtttaccaacaactcctatctgtcttacaaat-ttctcaggatagtccttccagaaatggtgttaatcagggaacgctt |
166 |
Q |
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| T |
49060354 |
ttaaactaatgtttgtatagagtttgctagtgactcctatttgtcctacaactattttcaggatagtccttccaggaaaggagtgaatcagggcacactt |
49060255 |
T |
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| Q |
167 |
gaagtatttttatatgattcatc |
189 |
Q |
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| T |
49060254 |
gcagtatttttatatgattcatc |
49060232 |
T |
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