View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_low_5 (Length: 512)
Name: NF6363_low_5
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 44680372 - 44680335
Alignment:
| Q |
421 |
atgcttggaacatttctgctaaggtatctagagatgga |
458 |
Q |
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| T |
44680372 |
atgcttggaacatttctgctaaggtatctagagatgga |
44680335 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 4431961 - 4432034
Alignment:
| Q |
19 |
aaaacagcaagattggatcctatctatagatctccgattgattttacatgttcaagatacaaaacaaaagggaa |
92 |
Q |
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|||||||||||||||||||||||||| |||| | ||| ||||||||||||| | |||||||| | |||||| |
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| T |
4431961 |
aaaacagcaagattggatcctatctaaagatgtgtgataaattttacatgttccatctacaaaactagagggaa |
4432034 |
T |
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