View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_low_7 (Length: 440)
Name: NF6363_low_7
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 44308510 - 44308922
Alignment:
| Q |
12 |
caaacaactctcaaaggctgtcattgaaatggccttnnnnnnngctgtcgaaggacaagcttttcttaaaggattggcacnnnnnnntccaaaacttgaa |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44308510 |
caaacaactctcaaaggctgtcattgaaatggccttaaaaaaagctgtcgaaggacaagcttttcttaaaggattggcacaaaaaaatccaaaacttgaa |
44308609 |
T |
|
| Q |
112 |
acatgtgcaggttttgcttatgatggagtagtagggtctttcaaaagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcggtg |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44308610 |
acatgtgcaggttttgcttatgatggagtagtagggtctttcaaaagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcggtg |
44308709 |
T |
|
| Q |
212 |
ttgttggcgacggacctactcaatgcgatagaataatggctgatgcgcatattgttaaccctgctattactgctcttaacaagcaaatcctattccttag |
311 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44308710 |
ttgttggtgacggacctactcaatgcgatagaataatggctgatgcgcatattgttaaccctgctattactgctcttaacaagcaaatcctattccttag |
44308809 |
T |
|
| Q |
312 |
ttctcttgcatccagagccgttgataaactttaaattgcattccttgcatggttatgttattttgggtataatcagacccaaaatgagaagaaaagtcgt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
44308810 |
ttctcttgcatccagagccgttgataaactttaaattgcattccttgcatggttatgttattttgggtataatcaaacccaaaatgagaaaaaaagtcgt |
44308909 |
T |
|
| Q |
412 |
ttaattttagggt |
424 |
Q |
| |
|
||||||||||||| |
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| T |
44308910 |
ttaattttagggt |
44308922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 56 - 404
Target Start/End: Original strand, 44194595 - 44194942
Alignment:
| Q |
56 |
ctgtcgaaggacaagcttttcttaaaggattggcacnnnnnnntccaaaacttgaaacatgtgcaggttttgcttatgatggagtagtagggtctttcaa |
155 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44194595 |
ctgtcgaaggacaagcttttcttaaaggattggcacaaaaaaatccaaaacttgaaacatgtgcaggttttgcttatgatggagtagtagggtctttcaa |
44194694 |
T |
|
| Q |
156 |
aagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcggtgttgttggcgacggacctactcaatgcgatagaataatggctgat |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||| |||||| ||||||||||| |
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| T |
44194695 |
aagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcaaagttgctgttgatggacctactcaatgtgatagagtaatggctgat |
44194794 |
T |
|
| Q |
256 |
gcgcatattgttaaccctgctattactgctcttaacaagcaaatcctattccttagttctcttgcatccagagccgttgataaactttaaattgcattcc |
355 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
44194795 |
gagcatattgttaaccctgctattactgctcttaacaagcaaatcgcattccttagtgaacttgcatccaaagccgttgataaactttaaattgcattcc |
44194894 |
T |
|
| Q |
356 |
ttgcatggttatgttattttgggtataatcagacccaaaatgagaagaa |
404 |
Q |
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||| |||||| |||||||||||||||| | | ||||||||||||||||| |
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| T |
44194895 |
ttgtatggttgtgttattttgggtatactta-acccaaaatgagaagaa |
44194942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 56 - 404
Target Start/End: Original strand, 44301029 - 44301376
Alignment:
| Q |
56 |
ctgtcgaaggacaagcttttcttaaaggattggcacnnnnnnntccaaaacttgaaacatgtgcaggttttgcttatgatggagtagtagggtctttcaa |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44301029 |
ctgtcgaaggacaagcttttcttaaaggattggcacaaaaaaatccaaaacttgaaacatgtgcaggttttgcttatgatggagtagtagggtctttcaa |
44301128 |
T |
|
| Q |
156 |
aagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcggtgttgttggcgacggacctactcaatgcgatagaataatggctgat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||| |||||| ||||||||||| |
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| T |
44301129 |
aagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcaaagttgctgttgatggacctactcaatgtgatagagtaatggctgat |
44301228 |
T |
|
| Q |
256 |
gcgcatattgttaaccctgctattactgctcttaacaagcaaatcctattccttagttctcttgcatccagagccgttgataaactttaaattgcattcc |
355 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
44301229 |
gagcatattgttaaccctgctattactgctcttaacaagcaaatcgcattccttagtgaacttgcatccaaagccgttgataaactttaaattgcattcc |
44301328 |
T |
|
| Q |
356 |
ttgcatggttatgttattttgggtataatcagacccaaaatgagaagaa |
404 |
Q |
| |
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||| |||||| |||||||||||||||| | | ||||||||||||||||| |
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| T |
44301329 |
ttgtatggttgtgttattttgggtatactta-acccaaaatgagaagaa |
44301376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 44315804 - 44315854
Alignment:
| Q |
259 |
catattgttaaccctgctattactgctcttaacaagcaaatcctattcctt |
309 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||||||| |
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|
| T |
44315804 |
catattgttaaccctgctgttactgctcttaaccgtcaaatcttattcctt |
44315854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 23715028 - 23714954
Alignment:
| Q |
17 |
aactctcaaaggctgtcattgaaatggccttnnnnnnngctgtcgaaggacaagcttttcttaaaggattggcac |
91 |
Q |
| |
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||||||||||||||||| |||||| ||| | |||||||||||| ||||||| |||||||||||||||| |
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| T |
23715028 |
aactctcaaaggctgtcgctgaaatcgccattaaaaaagctgtcgaaggagaagctttccttaaaggattggcac |
23714954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 23733484 - 23733410
Alignment:
| Q |
17 |
aactctcaaaggctgtcattgaaatggccttnnnnnnngctgtcgaaggacaagcttttcttaaaggattggcac |
91 |
Q |
| |
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||||||||||||||||| |||||| ||| | |||||||||||| ||||||| |||||||||||||||| |
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| T |
23733484 |
aactctcaaaggctgtcgctgaaatcgccattaaaaaagctgtcgaaggagaagctttccttaaaggattggcac |
23733410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 23751939 - 23751865
Alignment:
| Q |
17 |
aactctcaaaggctgtcattgaaatggccttnnnnnnngctgtcgaaggacaagcttttcttaaaggattggcac |
91 |
Q |
| |
|
||||||||||||||||| |||||| ||| | |||||||||||| ||||||| |||||||||||||||| |
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| T |
23751939 |
aactctcaaaggctgtcgctgaaatcgccattaaaaaagctgtcgaaggagaagctttccttaaaggattggcac |
23751865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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