View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_low_8 (Length: 439)
Name: NF6363_low_8
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 173 - 429
Target Start/End: Complemental strand, 10069266 - 10069011
Alignment:
| Q |
173 |
attacaaacataaacaaaataaataatgaaattggataatgattttatagccatgcagcacttatagtcatacataaaatagcttaccnnnnnnnnctag |
272 |
Q |
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| T |
10069266 |
attacaaacataaacaacctaaataatgaaattggataatcattttatagccatgcaccacttatagtcatacataaaatagcttaccttttttt-ctag |
10069168 |
T |
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| Q |
273 |
ttatgtgtgaactcaaaaattctaatttcaagatggattttgcagggttgcagtgaattttctgttgttcaagtaaagtgtatttcctataaagcatgac |
372 |
Q |
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| T |
10069167 |
ttatgtgtgaactcaaaaattctaatttcaagatggatttttcagggatgcagtgaattttctgttgttcaagtaaagtgtatttcctataaagcatgac |
10069068 |
T |
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| Q |
373 |
tacaaatgaaaagaaatttgtgaggtttgtaatgttattttagcatcacaggttctg |
429 |
Q |
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| T |
10069067 |
tacaaatgaaaagaaatttgtgaggtttgcagtgttattttagcatcacatgttctg |
10069011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 10069551 - 10069424
Alignment:
| Q |
1 |
ttttaaactcttcgtctctctgctttggttcctattgttaaggtaacagaaaaagaaacttcattttctcacttatctatcaaaaccaaccttggtggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10069551 |
ttttaaactcttcgtctctctgctttggttcctattgttaaggtaacagaaaaagaaacttcattttctcacttatctatcaaaaccaaccttggtggtg |
10069452 |
T |
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| Q |
101 |
tttactgtttttccttttccttctacta |
128 |
Q |
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| T |
10069451 |
tttactgtttttccttttccttctacta |
10069424 |
T |
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