View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6363_low_9 (Length: 411)
Name: NF6363_low_9
Description: NF6363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6363_low_9 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 30 - 411
Target Start/End: Complemental strand, 10069415 - 10069032
Alignment:
| Q |
30 |
aaagaggcatgtgagtatctgcgttgcgtttagttaatcgtctcaaaaacaagaagaatgaaaccaccaaaacttatttcctctctcatcaacaagacaa |
129 |
Q |
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| T |
10069415 |
aaagaggcatgtgagtttctgcgttgcgttcagttaatcgtctcaaaaacaagaagaatgaaaccaccaaaacttatttcctctctcatcaacaagacaa |
10069316 |
T |
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| Q |
130 |
ttgtcatcatccttgaaatcctcgaaaacaataagttgaggcaggctggccatcagaaattaaataatcccaaaaatttgctttattttattttcatcct |
229 |
Q |
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| T |
10069315 |
ttgtcatcatccttgaaatcctcgaaaacaataagttgaggcaggctggccatcaaaaattaaataatcccaaaaatttgctttattttattttcatcct |
10069216 |
T |
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| Q |
230 |
ctattgcaactatataaagtcacatagacatacacttaatattcatccactacctatccttgtctttgcctaaccacttttctcgatttctttcctcgca |
329 |
Q |
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| T |
10069215 |
ctattgcaactatataaagtcgcatagacatacacttaatattcatccactacctatccttgtctttgcctaaccacttctctcgatttctttccttgca |
10069116 |
T |
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| Q |
330 |
ag-aaagaaacaaaatttccaagaaaa-tttcagaaatggaagcattgaagatgaagcaattttttgctatggttgtagtggcc |
411 |
Q |
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| T |
10069115 |
agaaaagaaacaaaatttccaagaaaattttcagaaatggaagcattgaagatgaagcaattttttgctatgctggtagtggcc |
10069032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 236 - 409
Target Start/End: Complemental strand, 10106970 - 10106792
Alignment:
| Q |
236 |
caactatataaagtcacatagacatacacttaatattcatccactacctatccttgtctttgcctaaccacttttctcgatttctttcctcgcaag-aaa |
334 |
Q |
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| T |
10106970 |
caactatataaagtcacatagacatacacttaatattcatccactacctatccttgtatttgcctacccattcctctcactttctttcctcaaaagaaaa |
10106871 |
T |
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| Q |
335 |
gaaacaaaatttccaagaaaattt----cagaaatggaagcattgaagatgaagcaattttttgctatggttgtagtgg |
409 |
Q |
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| T |
10106870 |
gaaagaaaatttccaagttttttttttatagaaatggaggcattgaagatgaatcaaatttttgctatggtggtagtgg |
10106792 |
T |
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