View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6364_high_2 (Length: 316)
Name: NF6364_high_2
Description: NF6364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6364_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 39631406 - 39631687
Alignment:
| Q |
18 |
atgaattatgataccacgcaaatctttctgacttattcagaattaaaaagggagcaaaagatttccaaaaccttgacaatatatgcctttgaaacttgtt |
117 |
Q |
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| T |
39631406 |
atgaattatgataccactcaaatctttctgacttattcagaattaaaaagggagcaaaagatttccaaaaccttgacaatatatgcctttgaaacttgtt |
39631505 |
T |
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| Q |
118 |
taactcataacttaaggtatgtacaactaatcttaatactataattgattaaa-tactgatggctgatcatcttttgtttattgattaaacgtacgtggc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631506 |
taactcataacttaaggtatgtacaactaatcttaatactataattgattaaattactgatggctgatcatcttttgtttattgattaaacgtacgtggc |
39631605 |
T |
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| Q |
217 |
atcttaatctccccgaaatgttaaagctcattcaaacaaattgttannnnnnnnaatatttctagtggcataatattctgtg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39631606 |
atcttaatctccccgaaatgttaaagctcattcaaacaaattgttattttttttaatatttctagtggcataatattctgtg |
39631687 |
T |
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