View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_high_10 (Length: 478)
Name: NF6365_high_10
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 486209 - 485747
Alignment:
| Q |
1 |
accttaagtgtggagaatctaggatttgaatcaagacacctacatgttaacgtccttgcagctaccaattgagttgtacgtacaacaagactaatgtcat |
100 |
Q |
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| T |
486209 |
accttaagtgtggagaatctaggatttgaatcaagacacctacatgttaacgtccttgcagctaccaattgagttgtacgtacaacaagactaatgtcat |
486110 |
T |
|
| Q |
101 |
ttttagtattgtattgtgtgactactaatctaaaagaacttggttagggaattttaatgtggccgcaccaagtatatatttttcatttacaaagctcgaa |
200 |
Q |
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| T |
486109 |
ttttagtattgtattgtgtgactattaatctaaaagaacttggttagggaattttaatgtggccgcaccaagtatatatttttcatttacaaagctcgaa |
486010 |
T |
|
| Q |
201 |
tccgatatcatgtttaaaaatatataaatctagttctacttgaatcagcgtaatgtttcaataatgattaaattattatgtttgcaaataagacatatta |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
486009 |
tccgatatcatgtttaaaaa-atataaatctagttctacttgaatcagcgtaatgtttcaataatgattaaattattatgtttgcaaataagacatatta |
485911 |
T |
|
| Q |
301 |
taataggaagtgagaagaagcatgctgtcatttaaaaaattagtgaatatattgagatcttgtatgtagatggaaaaataagggctggggacaaagtttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
485910 |
taataggaagtgagaagaagcatgctgtcatttaaaaaattagtgaatatattgagatcttgtatgtagatggaaaaataagggctagggacaaagtttt |
485811 |
T |
|
| Q |
401 |
tccattcttttaaaactcagaacaagaactttgactttcaaaagttagaattcaggatttgatg |
464 |
Q |
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| T |
485810 |
tccattcttttaaaattcagaacaagaactttgactttcaaaagttagaattcaggatttgatg |
485747 |
T |
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