View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6365_high_24 (Length: 365)

Name: NF6365_high_24
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6365_high_24
NF6365_high_24
[»] chr1 (9 HSPs)
chr1 (17-347)||(11818084-11818414)
chr1 (192-299)||(3527724-3527831)
chr1 (18-93)||(11826646-11826721)
chr1 (182-299)||(32815199-32815316)
chr1 (190-274)||(38788671-38788755)
chr1 (188-299)||(894750-894861)
chr1 (191-230)||(12047253-12047292)
chr1 (37-107)||(11804333-11804403)
chr1 (183-255)||(4044864-4044936)
[»] chr6 (2 HSPs)
chr6 (189-302)||(40015-40128)
chr6 (182-305)||(7984534-7984657)
[»] chr2 (11 HSPs)
chr2 (182-297)||(13490814-13490929)
chr2 (192-299)||(12956873-12956979)
chr2 (182-254)||(40821210-40821282)
chr2 (187-297)||(36903935-36904045)
chr2 (182-238)||(7670187-7670243)
chr2 (182-254)||(9047629-9047701)
chr2 (221-297)||(39491066-39491142)
chr2 (192-299)||(2854399-2854506)
chr2 (186-299)||(38402508-38402621)
chr2 (187-235)||(7920228-7920276)
chr2 (182-254)||(14812304-14812376)
[»] chr3 (11 HSPs)
chr3 (187-299)||(27213970-27214082)
chr3 (191-279)||(52525478-52525566)
chr3 (182-297)||(44455062-44455177)
chr3 (182-279)||(2528048-2528140)
chr3 (182-298)||(23629286-23629400)
chr3 (187-299)||(45249394-45249506)
chr3 (182-230)||(50888883-50888931)
chr3 (182-254)||(53199786-53199858)
chr3 (182-235)||(25122360-25122413)
chr3 (182-238)||(15568513-15568569)
chr3 (182-238)||(15664492-15664548)
[»] chr4 (13 HSPs)
chr4 (182-280)||(34236717-34236815)
chr4 (182-298)||(29927278-29927394)
chr4 (182-272)||(10097949-10098039)
chr4 (187-299)||(2168424-2168536)
chr4 (182-240)||(33335278-33335336)
chr4 (182-238)||(22575376-22575432)
chr4 (202-254)||(4512819-4512871)
chr4 (187-299)||(9093615-9093727)
chr4 (203-299)||(21935291-21935386)
chr4 (187-299)||(37624798-37624910)
chr4 (182-225)||(32922841-32922884)
chr4 (187-305)||(4452812-4452930)
chr4 (201-254)||(43771856-43771909)
[»] chr8 (11 HSPs)
chr8 (182-272)||(42446555-42446645)
chr8 (182-299)||(13177784-13177901)
chr8 (245-298)||(38573263-38573316)
chr8 (185-253)||(34505188-34505256)
chr8 (182-268)||(2072197-2072283)
chr8 (189-279)||(32967694-32967784)
chr8 (182-297)||(515149-515262)
chr8 (182-295)||(7621449-7621560)
chr8 (202-299)||(24999438-24999535)
chr8 (191-243)||(32094367-32094419)
chr8 (182-238)||(41909214-41909270)
[»] chr5 (6 HSPs)
chr5 (196-299)||(36487184-36487287)
chr5 (182-295)||(16054401-16054513)
chr5 (187-299)||(37447268-37447380)
chr5 (245-299)||(34338876-34338930)
chr5 (192-279)||(39351064-39351151)
chr5 (182-272)||(3135629-3135719)
[»] chr7 (8 HSPs)
chr7 (182-295)||(29414609-29414722)
chr7 (210-280)||(46515466-46515536)
chr7 (187-299)||(10624917-10625029)
chr7 (206-295)||(29555769-29555858)
chr7 (187-275)||(1111733-1111821)
chr7 (192-312)||(25119981-25120101)
chr7 (187-254)||(37869753-37869820)
chr7 (245-304)||(40199051-40199110)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 11818414 - 11818084
Alignment:
Q  17 aattcttttactgatatgcatgctgctttgttctctatgcccattaaccttcctggttttgcttttcgtaaaggactcatggtaactatttcctatattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11818414 aattcttttactgatatgcatgctgctttgttctctatgcccattaaccttcctggttttgcttttcgtaaaggactcatggtaactatttcctatattt 11818315  T
Q  117 tcatttttaccttcatataataacgatattattgacataaatagcccctagggcattgtttaagctttatattgaaaattgtatagttatgacttttaca 216  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11818314 tcagttttaccttcatataataacgatattattgacataaatagcccctagggcattgtttaagcattatattgaaaattgtatagttatgacttttaca 11818215  T
Q  217 tgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttgttagcaagaccatttttctatttataaa 316  Q
    ||| |||||||||| |||| || |||||||||||||||| |||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||    
T  11818214 tgtttttgacttgtattttcaagacaagatttctttttatgggttctttaaacaatgcctttagagtacttgttagtaagaccatttttctatttataaa 11818115  T
Q  317 atccattattttactaaaatttgcaactttc 347  Q
    |||||||||||||||||||||||||||||||    
T  11818114 atccattattttactaaaatttgcaactttc 11818084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 3527724 - 3527831
Alignment:
Q  192 aaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttgtta 291  Q
    ||||||| ||||||||||||||| || | |||||||||| |||  | ||||| ||||||||||  || ||| |||||||||| |||||||||||||||||    
T  3527724 aaattgtgtagttatgacttttatatatgtttgacttgtatttccataacaaaatttctttttgtggattccttaaacaatgctcttagagtacttgtta 3527823  T
Q  292 gcaagacc 299  Q
    ||||||||    
T  3527824 gcaagacc 3527831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 11826721 - 11826646
Alignment:
Q  18 attcttttactgatatgcatgctgctttgttctctatgcccattaaccttcctggttttgcttttcgtaaaggact 93  Q
    ||||||||||||| ||  | | |||| | ||||||||||||||||||||||||||||||||||| | |||||||||    
T  11826721 attcttttactgaaatttacggtgctctattctctatgcccattaaccttcctggttttgctttccataaaggact 11826646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 32815199 - 32815316
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    |||| ||| |||||| | || |||| |||||||||| | |||||||||| ||||||| | || || |||||||  | ||||||||||||||||| ||| |    
T  32815199 tttacattaaaaattatgtaattattacttttacatatgtttgacttgtatttttaagataaaatatctttttgtgagttctttaaacaatgtttttaaa 32815298  T
Q  282 gtacttgttagcaagacc 299  Q
    | |||| |||| ||||||    
T  32815299 gcacttattagtaagacc 32815316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 274
Target Start/End: Complemental strand, 38788755 - 38788671
Alignment:
Q  190 gaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgt 274  Q
    ||||||||| ||||||||||||| ||| || |||||||||  |||  || |||| ||||| ||||| ||| ||||||||||||||    
T  38788755 gaaaattgtttagttatgactttcacaagtgtttgacttgaatttacaagacaaaatttccttttatgggctctttaaacaatgt 38788671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 894861 - 894750
Alignment:
Q  188 ttgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtactt 287  Q
    ||||||||||||   |||||||||| ||| || ||||||||||  ||| || |||  ||||| ||||  |||||| ||||||||||  ||||| | ||||    
T  894861 ttgaaaattgtacgattatgactttaacaagtgtttgacttgtactttcaagacataatttccttttgtgggttccttaaacaatgcccttagggcactt 894762  T
Q  288 gttagcaagacc 299  Q
    ||||||||||||    
T  894761 gttagcaagacc 894750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 12047253 - 12047292
Alignment:
Q  191 aaaattgtatagttatgacttttacatgtctttgacttgt 230  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  12047253 aaaattgtgtagttatgacttttacatgtgtttgacttgt 12047292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 11804403 - 11804333
Alignment:
Q  37 tgctgctttgttctctatgcccattaaccttcctggttttgcttttcgtaaaggactcatggtaactattt 107  Q
    ||||||||| | || |||||| ||| |||||||||| |||||||| | ||||||||||| ||||| |||||    
T  11804403 tgctgctttatactgtatgcctattgaccttcctggctttgctttccataaaggactcaaggtaaatattt 11804333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 4044936 - 4044864
Alignment:
Q  183 ttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttcttttta 255  Q
    |||| ||| |||||||||||||||||||| || || | |||||||||| |||| || ||||  ||||||||||    
T  4044936 ttatcttggaaattgtatagttatgacttgtatatatgtttgacttgtattttcaagacaaactttcttttta 4044864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 40128 - 40015
Alignment:
Q  189 tgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttg 288  Q
    ||||||||| ||||||||||||||||||||| ||||| |||| |||| || |||| |||||||| |  |||||| ||||||||||| ||||| | |||||    
T  40128 tgaaaattgcatagttatgacttttacatgtgtttgatttgtattttcaagacaaaatttctttatgtgggttccttaaacaatgtccttagggcacttg 40029  T
Q  289 ttagcaagaccatt 302  Q
    ||||||||||||||    
T  40028 ttagcaagaccatt 40015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 182 - 305
Target Start/End: Complemental strand, 7984657 - 7984534
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    |||| |||||||||| | |||||||||||||||||||| |||||||||| |||| || ||||  |||||||||  |||||| ||||||||||| || |||    
T  7984657 tttacattgaaaattttgtagttatgacttttacatgtgtttgacttgtattttcaagacaaagtttctttttgtgggttcattaaacaatgtcctcaga 7984558  T
Q  282 gtacttgttagcaagaccattttt 305  Q
      |||||||||||| ||| |||||    
T  7984557 acacttgttagcaaaacctttttt 7984534  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 13490929 - 13490814
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    ||||||||||||||||||||||||||| |||||||||| |||| ||| | |||| || |||| |||| |||||  ||||||||||||||||| | ||||     
T  13490929 tttatattgaaaattgtatagttatgatttttacatgtgtttgccttatattttcaagacaaaatttatttttgtgggttctttaaacaatgcttttagg 13490830  T
Q  282 gtacttgttagcaaga 297  Q
    | ||||||||||||||    
T  13490829 gcacttgttagcaaga 13490814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 12956873 - 12956979
Alignment:
Q  192 aaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttgtta 291  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||| | || |||| | ||||  || || ||||||||| | |||||||| |||||||    
T  12956873 aaattgtatagttatgactttgacatgtgtttgacttgtatttttaagataaaattt-tctttagtggatccttaaacaatatccttagagtgcttgtta 12956971  T
Q  292 gcaagacc 299  Q
    ||||||||    
T  12956972 gcaagacc 12956979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 40821282 - 40821210
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttcttttt 254  Q
    |||| ||||||||||||| |||||||||||||| || | |||||||| | |||||||||||| |||| |||||    
T  40821282 tttacattgaaaattgtacagttatgacttttaaatatatttgacttatatttttaaaacaaaatttattttt 40821210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 297
Target Start/End: Complemental strand, 36904045 - 36903935
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtact 286  Q
    |||| ||||||||  ||||||||||| | | || |||||||||| |||| || |||  ||||||||||  |||||| ||||||||||  ||||| | |||    
T  36904045 attggaaattgtacggttatgactttaataagtgtttgacttgtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcact 36903946  T
Q  287 tgttagcaaga 297  Q
    |||||||||||    
T  36903945 tgttagcaaga 36903935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 7670243 - 7670187
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaa 238  Q
    |||| ||||||||||||||| ||||||||||| ||| | |||||||||| |||||||    
T  7670243 tttacattgaaaattgtataattatgacttttccatatgtttgacttgtatttttaa 7670187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 9047629 - 9047701
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttcttttt 254  Q
    |||| |||||||||||||  ||||||||||| ||| || |||||||||| |||| ||||||  ||||||||||    
T  9047629 tttacattgaaaattgtacggttatgactttaacaagtgtttgacttgtattttcaaaacataatttcttttt 9047701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 39491066 - 39491142
Alignment:
Q  221 tttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttgttagcaaga 297  Q
    ||||| |||| |||| || |||| ||||||||||| || ||||||||||||| || |||||  ||||||||||||||    
T  39491066 tttgatttgtattttgaagacaacatttctttttatggattctttaaacaatatttttagaacacttgttagcaaga 39491142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 2854399 - 2854506
Alignment:
Q  192 aaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttgtta 291  Q
    ||||||| ||||||||||||||| || | ||| |||||| |||| || |||| |||||||| |  || ||| |||||| |||  ||||| | ||||||||    
T  2854399 aaattgtgtagttatgacttttagatatgtttaacttgtattttcaagacaaaatttctttatgtggattccttaaacgatgcccttagggcacttgtta 2854498  T
Q  292 gcaagacc 299  Q
    ||||||||    
T  2854499 gcaagacc 2854506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 299
Target Start/End: Complemental strand, 38402621 - 38402508
Alignment:
Q  186 tattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtac 285  Q
    ||||| ||||||||  ||||||||||| | | || ||| |||||| |||| ||||||  ||||||||||| || ||| ||||||||||  ||||    ||    
T  38402621 tattggaaattgtacggttatgactttaagaagtgtttaacttgtattttcaaaacataatttctttttatggattccttaaacaatgcccttatgacac 38402522  T
Q  286 ttgttagcaagacc 299  Q
    ||||||||||||||    
T  38402521 ttgttagcaagacc 38402508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 7920276 - 7920228
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttt 235  Q
    |||||||||||| ||||||||| |||||||||| ||||| |||| ||||    
T  7920276 attgaaaattgtgtagttatgatttttacatgtgtttgatttgtatttt 7920228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 14812304 - 14812376
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttcttttt 254  Q
    |||| |||||||||||| || |||| |||||||||| | |||||||||| |||| || | || ||||||||||    
T  14812304 tttacattgaaaattgtgtaattataacttttacatatgtttgacttgtattttcaagataaaatttcttttt 14812376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 27213970 - 27214082
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtact 286  Q
    |||| |||||||||||||||||||||||||| | |||||||||| ||||||| ||||  |||||||||  | |||| ||||||||||| ||||||  |||    
T  27213970 attggaaattgtatagttatgacttttacatatgtttgacttgtatttttaagacaaagtttctttttgtgtgttccttaaacaatgtccttagaacact 27214069  T
Q  287 tgttagcaagacc 299  Q
    ||||| |||||||    
T  27214070 tgttaacaagacc 27214082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 52525478 - 52525566
Alignment:
Q  191 aaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttctta 279  Q
    |||||| |||| ||||||||||||||||| |||||||| | |||||||||||| ||||||||||| |||||| ||||| ||||| ||||    
T  52525478 aaaattatataattatgacttttacatgtatttgacttatatttttaaaacaaaatttctttttatgggttccttaaataatgtactta 52525566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 182 - 297
Target Start/End: Complemental strand, 44455177 - 44455062
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    |||| ||||||||||||||||||||||||||||  ||| |||||||||| |||| || |||| |||||||| |  | |||  |||||||| || ||||||    
T  44455177 tttacattgaaaattgtatagttatgacttttatgtgtgtttgacttgtattttcaagacaaaatttctttctgtgagtttcttaaacaacgtccttaga 44455078  T
Q  282 gtacttgttagcaaga 297  Q
      ||||||||||||||    
T  44455077 acacttgttagcaaga 44455062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 279
Target Start/End: Complemental strand, 2528140 - 2528048
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttctta 279  Q
    |||||||||||| ||||||||||||||||||||   || |||||||||||||||||| |||  |||||||||   | ||||||||||||||| |||||    
T  2528140 tttatattgaaatttgtatagttatgactttta---gtgtttgacttgtgtttttaagaca--atttcttttcgtgtgttctttaaacaatgatctta 2528048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 298
Target Start/End: Original strand, 23629286 - 23629400
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||| |||| |||| |||||||  ||| |||| |||| ||| ||||||||||  |||| |    
T  23629286 tttacattgaaaattgtataattatgacttttacatgtgtttgatttgtattttcaaaacaa-ttttattttgaaggtttc-ttaaacaatgcgcttaaa 23629383  T
Q  282 gtacttgttagcaagac 298  Q
    | | |||||||||||||    
T  23629384 gaatttgttagcaagac 23629400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 45249394 - 45249506
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtact 286  Q
    |||| ||||||||  ||||||||||| |||  | |||||||||| |||| || |||  ||||||||||  |||||| ||||||||||  ||||| | |||    
T  45249394 attggaaattgtacggttatgactttaacaaatgtttgacttgtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcact 45249493  T
Q  287 tgttagcaagacc 299  Q
    ||||| |||||||    
T  45249494 tgttaacaagacc 45249506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 50888931 - 50888883
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgt 230  Q
    |||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  50888931 tttatattaaaaattgtgtagttataacttttacatgtgtttgacttgt 50888883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 53199786 - 53199858
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttcttttt 254  Q
    |||| |||||||||||| ||||||||||||| |||||| ||||| || | ||||||| ||||| ||| |||||    
T  53199786 tttacattgaaaattgtttagttatgactttaacatgtgtttgatttttatttttaagacaagtttttttttt 53199858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 25122360 - 25122413
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttt 235  Q
    ||||||||||||||||| ||||||||||||| || | | |||||||||| ||||    
T  25122360 tttatattgaaaattgtgtagttatgactttcacgtatgtttgacttgtatttt 25122413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 15568569 - 15568513
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaa 238  Q
    |||||||| |||||||||||||||||  ||||| |||| |||||||||  |||||||    
T  15568569 tttatattaaaaattgtatagttatgctttttatatgtgtttgacttgcatttttaa 15568513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 15664548 - 15664492
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaa 238  Q
    |||||||| ||| || ||||||||||| |||||||||| ||| |||||| |||||||    
T  15664548 tttatattaaaagttatatagttatgatttttacatgtgtttaacttgtatttttaa 15664492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 280
Target Start/End: Complemental strand, 34236815 - 34236717
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttag 280  Q
    |||| |||| ||||||| ||||||||| |||||||||| ||||| |||| ||||||| |||| ||||||||||  |||||||||||||||||| |||||    
T  34236815 tttacattgcaaattgtgtagttatgatttttacatgtttttgaattgtatttttaagacaaaatttctttttgtgggttctttaaacaatgtccttag 34236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 182 - 298
Target Start/End: Complemental strand, 29927394 - 29927278
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    |||| |||||||||||||||||||||||||||| |||| |||||||||| |||  || ||||  |||||||||  || ||| ||||||||||  |||||     
T  29927394 tttacattgaaaattgtatagttatgacttttatatgtgtttgacttgtatttccaagacaaagtttctttttgtggattccttaaacaatgcccttagg 29927295  T
Q  282 gtacttgttagcaagac 298  Q
    | |||||||||||||||    
T  29927294 gcacttgttagcaagac 29927278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 10097949 - 10098039
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaat 272  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| | |||| || |||| |||||| |||  || ||| |||||||||    
T  10097949 tttatattgaaaattgtatagttatgacttttacatgtatttgccttatattttcaagacaaaatttctctttgtggattccttaaacaat 10098039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 2168536 - 2168424
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtact 286  Q
    |||||||||||||  |||| |||||| ||| || |||||||||| |||| |  |||  |||| |||||| |||||||||||||||||| ||||| | |||    
T  2168536 attgaaaattgtacggttacgactttaacaagtgtttgacttgtattttcaggacataatttatttttatgggttctttaaacaatgtccttagggcact 2168437  T
Q  287 tgttagcaagacc 299  Q
    ||||| |||||||    
T  2168436 tgttaacaagacc 2168424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 33335336 - 33335278
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaa 240  Q
    ||||||||||||||||| |||||||||  ||||||||| |||||||||| |||||||||    
T  33335336 tttatattgaaaattgtgtagttatgatatttacatgtatttgacttgtatttttaaaa 33335278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 22575432 - 22575376
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaa 238  Q
    ||||||||||||||| | || ||||||||||||||||| |||||||||| |||||||    
T  22575432 tttatattgaaaattatgtaattatgacttttacatgtgtttgacttgtatttttaa 22575376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 4512871 - 4512819
Alignment:
Q  202 gttatgacttttacatgtctttgacttgtgtttttaaaacaagatttcttttt 254  Q
    ||||| |||||||||||| |||||||| ||||||||| |||| ||||||||||    
T  4512871 gttataacttttacatgtgtttgacttatgtttttaagacaaaatttcttttt 4512819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 9093615 - 9093727
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtact 286  Q
    |||||||||||||  ||||| ||||  ||| || |||||||| | |||| ||  ||| ||||||||||| |||||| ||||||||||| |||||   |||    
T  9093615 attgaaaattgtacggttataacttaaacaagtgtttgacttatattttcaaggcaaaatttctttttatgggttccttaaacaatgtccttaggacact 9093714  T
Q  287 tgttagcaagacc 299  Q
    ||||| |||||||    
T  9093715 tgttaacaagacc 9093727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 299
Target Start/End: Complemental strand, 21935386 - 21935291
Alignment:
Q  203 ttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttgttagcaagacc 299  Q
    |||||| |||||||| | ||| |||||| ||||| | |||||||||||||||  | |||| ||||| ||||||||||||| ||||| || |||||||    
T  21935386 ttatgatttttacat-tgtttaacttgtatttttgagacaagatttctttttttgagttccttaaataatgttcttagagcacttgctaacaagacc 21935291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 37624910 - 37624798
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtact 286  Q
    |||||||||||||  ||||| ||||| ||| || |||||||| | |||| ||| ||  ||||||||||| |||||| |||||||||||  |||  | |||    
T  37624910 attgaaaattgtacggttataactttaacaagtgtttgacttatattttcaaagcattatttctttttatgggttccttaaacaatgtctttatggaact 37624811  T
Q  287 tgttagcaagacc 299  Q
    ||||| |||||||    
T  37624810 tgttaacaagacc 37624798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 32922884 - 32922841
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttga 225  Q
    ||||||||||||||| ||||||||| |||||||||||| |||||    
T  32922884 tttatattgaaaattatatagttatcacttttacatgtatttga 32922841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 305
Target Start/End: Complemental strand, 4452930 - 4452812
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtact 286  Q
    ||||||||||   ||||||||||||||| || | |||||||||| | || ||||||| ||||| |||||  | ||| ||| |||||  | |||||  |||    
T  4452930 attgaaaattacgtagttatgacttttagatatatttgacttgtatattcaaaacaaaatttcattttatagattccttagacaatacttttagaacact 4452831  T
Q  287 tgttagcaagaccattttt 305  Q
    |||||||||||| ||||||    
T  4452830 tgttagcaagacaattttt 4452812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 43771909 - 43771856
Alignment:
Q  201 agttatgacttttacatgtctttgacttgtgtttttaaaacaagatttcttttt 254  Q
    |||||||||||| |||||| |||||||||| ||||||| ||||  |||||||||    
T  43771909 agttatgactttaacatgtgtttgacttgtatttttaagacaaagtttcttttt 43771856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 42446645 - 42446555
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaat 272  Q
    ||||||||||||||||| ||||||| |||||||||| | ||| |||| | |||||||||||| ||||||||||   |||||||||||||||    
T  42446645 tttatattgaaaattgtgtagttataacttttacatatatttaacttatatttttaaaacaaaatttctttttgtaggttctttaaacaat 42446555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 13177784 - 13177901
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    ||||||||| ||||| | |||||||||||||||||||| |||||||||| |||| || ||||  ||||||||| | | ||| ||||||||||  |||||     
T  13177784 tttatattggaaattatgtagttatgacttttacatgtgtttgacttgtattttcaagacaaactttctttttgaagattccttaaacaatgcccttagg 13177883  T
Q  282 gtacttgttagcaagacc 299  Q
      ||||||||||||||||    
T  13177884 acacttgttagcaagacc 13177901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 38573316 - 38573263
Alignment:
Q  245 atttctttttaagggttctttaaacaatgttcttagagtacttgttagcaagac 298  Q
    ||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||    
T  38573316 atttctttttatgggttccttaaacaatgttcttagagcacttgttaacaagac 38573263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 34505256 - 34505188
Alignment:
Q  185 atattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttt 253  Q
    ||||||||||||||||| ||||||||||||||||| |||||||| | |||| |||| || | |||||||    
T  34505256 atattgaaaattgtataattatgacttttacatgtgtttgacttattttttcaaaaaaaaaattctttt 34505188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 2072197 - 2072283
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaa 268  Q
    |||||||| |||||||| ||||||| ||||||| |||| ||||| |||| |||| || | || |||||||||||||  |||||||||    
T  2072197 tttatattaaaaattgtgtagttataacttttatatgtgtttgatttgtattttcaagagaaaatttctttttaagcattctttaaa 2072283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 32967784 - 32967694
Alignment:
Q  189 tgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttctta 279  Q
    |||||||||||||||||||| |||||||||  |||||||||| |||| || | || |||||| |||| |  ||| ||||||||||| ||||    
T  32967784 tgaaaattgtatagttatgatttttacatgagtttgacttgtattttgaagataaaatttctctttatgaattccttaaacaatgtcctta 32967694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 297
Target Start/End: Original strand, 515149 - 515262
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    |||| |||| ||||||| |||||||||||||||||| | |||||||||| |||| || |||   |||| ||||| |||||| |||||||||   ||||      
T  515149 tttaaattggaaattgtgtagttatgacttttacatatatttgacttgtattttcaagaca--gtttccttttatgggttccttaaacaatacccttacg 515246  T
Q  282 gtacttgttagcaaga 297  Q
     |||||||||||||||    
T  515247 atacttgttagcaaga 515262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 295
Target Start/End: Complemental strand, 7621560 - 7621449
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    |||| |||||| ||| |||| ||||||||||||||||| |||||||| | || |||| |||| ||||||||| |||  ||| ||||||||| | |||| |    
T  7621560 tttacattgaacattttataattatgacttttacatgtgtttgacttatattcttaagacaa-atttcttttgaagttttc-ttaaacaatatccttaaa 7621463  T
Q  282 gtacttgttagcaa 295  Q
    | | ||||||||||    
T  7621462 gaatttgttagcaa 7621449  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 24999438 - 24999535
Alignment:
Q  202 gttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttgttagcaagacc 299  Q
    ||||||||||| ||| || |||||||||| |||| || |||  ||||||||||  |||||| || |||||||  ||||| | |||||||| |||||||    
T  24999438 gttatgactttaacaagtgtttgacttgtattttcaagacataatttctttttgtgggttcctttaacaatgcccttagggcacttgttaacaagacc 24999535  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 32094419 - 32094367
Alignment:
Q  191 aaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaa 243  Q
    |||||| |||| ||||||||||||||||| |||||||| | |||||| |||||    
T  32094419 aaaattatataattatgacttttacatgtatttgacttatatttttataacaa 32094367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 41909270 - 41909214
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaa 238  Q
    |||| ||| |||||||||||||||||||||||| || | ||| |||||| |||||||    
T  41909270 tttacattaaaaattgtatagttatgacttttagatatgtttaacttgtatttttaa 41909214  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 36487287 - 36487184
Alignment:
Q  196 tgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttgttagcaa 295  Q
    |||| |||||||||||| |||| | ||||| |||| |||| || |||  ||||||||||  |||||| |||||||||||||||| || ||||||||||||    
T  36487287 tgtacagttatgactttaacatatgtttgatttgtattttcaatacataatttctttttgtgggttccttaaacaatgttcttatagcacttgttagcaa 36487188  T
Q  296 gacc 299  Q
    ||||    
T  36487187 gacc 36487184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 16054401 - 16054513
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    |||| |||||||||| | || |||||||||||| |||| |||||||||| |||| ||||||| ||||||||||  |||||  ||||||||||| |||||     
T  16054401 tttacattgaaaattatgta-ttatgacttttatatgtgtttgacttgtattttaaaaacaaaatttctttttgtgggtttcttaaacaatgtccttagg 16054499  T
Q  282 gtacttgttagcaa 295  Q
      ||||||||||||    
T  16054500 acacttgttagcaa 16054513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 37447268 - 37447380
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtact 286  Q
    |||||||||| |  |||||||| ||||| |||| |||||||| | |||| || ||||  |||||||||   ||||| ||||||||||||||||| | |||    
T  37447268 attgaaaattatgcagttatgaattttatatgtgtttgacttatattttcaagacaaagtttctttttgtaggttccttaaacaatgttcttagggcact 37447367  T
Q  287 tgttagcaagacc 299  Q
    |||||||||||||    
T  37447368 tgttagcaagacc 37447380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 299
Target Start/End: Complemental strand, 34338930 - 34338876
Alignment:
Q  245 atttctttttaagggttctttaaacaatgttcttagagtacttgttagcaagacc 299  Q
    ||||||||||| |||||||||||||||||| ||||| | |||||||| |||||||    
T  34338930 atttctttttatgggttctttaaacaatgtccttagggcacttgttaacaagacc 34338876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 39351064 - 39351151
Alignment:
Q  192 aaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttctta 279  Q
    |||||||||| |||||||||||| |||| |||||||||| |||| |  | || |||| |||||  | ||||||||||||||| |||||    
T  39351064 aaattgtataattatgacttttagatgtgtttgacttgtattttcatgataaaatttatttttctgagttctttaaacaatgctctta 39351151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 3135629 - 3135719
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaat 272  Q
    |||| ||| |||||||| ||||||||||||||| || | |||||||||| ||||||  ||||  ||||||||||  ||||  |||||||||    
T  3135629 tttacattaaaaattgtgtagttatgacttttatatatgtttgacttgtatttttatgacaaactttctttttattggtttcttaaacaat 3135719  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 182 - 295
Target Start/End: Complemental strand, 29414722 - 29414609
Alignment:
Q  182 tttatattgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttaga 281  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||| |||| || ||||  || | ||||  || ||| |||||||||||| ||||     
T  29414722 tttacattgaaaattgtataggtatgacttttacatgtatttgacttgtattttcaagacaaagttccattttgtggcttccttaaacaatgtttttagg 29414623  T
Q  282 gtacttgttagcaa 295  Q
    | | ||||||||||    
T  29414622 gcatttgttagcaa 29414609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 46515536 - 46515466
Alignment:
Q  210 ttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttag 280  Q
    ||||| |||| |||||||||| ||||||||| || ||||||||||| | |||||||||||||||| |||||    
T  46515536 ttttatatgtgtttgacttgtatttttaaaataatatttctttttatgagttctttaaacaatgtccttag 46515466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 10625029 - 10624917
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtact 286  Q
    |||||||||||||  ||||||||| | | | || |||||||||| |||| || |||  ||||||||||  |||||||||||||||||  ||||||  |||    
T  10625029 attgaaaattgtacggttatgactataataagtgtttgacttgtattttcaagacataatttctttttgtgggttctttaaacaatgcccttagaacact 10624930  T
Q  287 tgttagcaagacc 299  Q
    ||||| |||||||    
T  10624929 tgttaacaagacc 10624917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 295
Target Start/End: Original strand, 29555769 - 29555858
Alignment:
Q  206 tgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttgttagcaa 295  Q
    |||||||||||||| |||||||| ||||||||| |  | ||||||||||  | |||| |||||||||| ||||||   ||||||||||||    
T  29555769 tgacttttacatgtgtttgacttctgtttttaagatgaaatttctttttgcgagttccttaaacaatgctcttaggacacttgttagcaa 29555858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 1111733 - 1111821
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgtt 275  Q
    |||||||||||||| ||||||||||| ||| || |||||||| | |||| ||||||  |||  |||||  ||||||||||| |||||||    
T  1111733 attgaaaattgtatggttatgactttaacaagtgtttgacttatattttcaaaacataattattttttgtgggttctttaagcaatgtt 1111821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 25119981 - 25120101
Alignment:
Q  192 aaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttctttttaagggttctttaaacaatgttcttagagtacttgtta 291  Q
    ||||||||| ||||| ||||| |||| | ||||| |||| |||| || |||  ||||||||||  || ||| |||||||||   ||||| | ||||||||    
T  25119981 aaattgtatggttataactttaacatatatttgaattgtattttcaagacacaatttctttttgtggattccttaaacaatacccttagggcacttgtta 25120080  T
Q  292 gcaagaccatttttctattta 312  Q
    ||||||||||| || ||||||    
T  25120081 gcaagaccattgttttattta 25120101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 37869753 - 37869820
Alignment:
Q  187 attgaaaattgtatagttatgacttttacatgtctttgacttgtgtttttaaaacaagatttcttttt 254  Q
    |||||||||||||  ||||||||||| ||| || |||||||| | |||||||||||  ||||||||||    
T  37869753 attgaaaattgtacggttatgactttaacaagtgtttgacttatatttttaaaacataatttcttttt 37869820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 40199051 - 40199110
Alignment:
Q  245 atttctttttaagggttctttaaacaatgttcttagagtacttgttagcaagaccatttt 304  Q
    ||||||||||| || |||||||||||| || ||||||| | |||||| ||||||||||||    
T  40199051 atttctttttatggattctttaaacaacgtccttagagcatttgttaacaagaccatttt 40199110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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