View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_high_25 (Length: 363)
Name: NF6365_high_25
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 347
Target Start/End: Original strand, 36646489 - 36646823
Alignment:
| Q |
12 |
aaaggatatacaaaacaccaagtttgtttacaccacagtggtcaaatatctgaatgttaggtagctcttaacattgaatgacatttcatttcaaccaaaa |
111 |
Q |
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| T |
36646489 |
aaaggatatacaaaacaccaagtttgtttacaccacagtggtcaaatatctgaatgttaggtagctcttaacattgaatgacatttcatttcaaccaaaa |
36646588 |
T |
|
| Q |
112 |
acataagactggtagttcgttgtcatactcaattaccaaatttacaccactacattgaaattgaaattcttaaacatttgacagnnnnnnnagttaatgt |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36646589 |
acataagactggtagttcgttgtcatgctcaattaccaaatttacaccactacattgaaattgaaattcttaaacatttgacagtttttttagttaatgt |
36646688 |
T |
|
| Q |
212 |
atacagaaatcgaaatgannnnnnnnnngcatcaaaattttaacgtcgaatatatggtgtcctttgatttttgtgtannnnnnnaaaatctaagtaagtt |
311 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36646689 |
atacagaaatcgaaatga-tttttttttgcatcaaaattttaacgtcgaatatatggtgtcctttgatttttgtgtattttttaaaaatctaagtaagtt |
36646787 |
T |
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| Q |
312 |
gtataaggtaaaaagtaaaagagagatggagataaa |
347 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
36646788 |
gtataaggtaaaaagtaaaagagagatagagataaa |
36646823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 24349470 - 24349429
Alignment:
| Q |
306 |
taagttgtataaggtaaaaagtaaaagagagatggagataaa |
347 |
Q |
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||||||||||||| ||| |||||||||| ||||||||||||| |
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| T |
24349470 |
taagttgtataagataataagtaaaagaaagatggagataaa |
24349429 |
T |
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