View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6365_high_3 (Length: 736)

Name: NF6365_high_3
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6365_high_3
NF6365_high_3
[»] chr1 (29 HSPs)
chr1 (1-719)||(33931060-33931781)
chr1 (266-645)||(5171104-5171481)
chr1 (375-645)||(6770862-6771130)
chr1 (394-533)||(39989270-39989408)
chr1 (126-259)||(15417783-15417916)
chr1 (125-259)||(7438616-7438750)
chr1 (135-254)||(19424051-19424170)
chr1 (135-254)||(25800304-25800423)
chr1 (126-259)||(24134590-24134723)
chr1 (139-259)||(30735837-30735957)
chr1 (126-254)||(50065006-50065134)
chr1 (123-254)||(48497184-48497315)
chr1 (126-232)||(25421850-25421957)
chr1 (149-254)||(42946438-42946543)
chr1 (135-259)||(43109204-43109328)
chr1 (126-254)||(49619968-49620096)
chr1 (266-350)||(6771137-6771221)
chr1 (125-260)||(14262686-14262821)
chr1 (192-259)||(29936647-29936713)
chr1 (125-259)||(47651867-47652000)
chr1 (179-226)||(9527476-9527523)
chr1 (126-176)||(24253692-24253742)
chr1 (180-226)||(34560336-34560382)
chr1 (126-231)||(50011503-50011608)
chr1 (139-231)||(4684171-4684263)
chr1 (121-213)||(34702324-34702417)
chr1 (181-226)||(39433410-39433455)
chr1 (181-226)||(39434670-39434715)
chr1 (126-254)||(40061439-40061567)
[»] chr8 (23 HSPs)
chr8 (266-645)||(15917096-15917474)
chr8 (345-617)||(8567528-8567798)
chr8 (135-254)||(22652688-22652807)
chr8 (135-260)||(1360100-1360224)
chr8 (126-259)||(44828398-44828532)
chr8 (122-215)||(45536710-45536804)
chr8 (123-259)||(38289201-38289337)
chr8 (126-259)||(8350432-8350566)
chr8 (125-216)||(3311435-3311527)
chr8 (126-231)||(1032566-1032671)
chr8 (136-225)||(43508448-43508537)
chr8 (126-254)||(19733040-19733168)
chr8 (135-259)||(29114107-29114230)
chr8 (135-215)||(43456661-43456742)
chr8 (167-226)||(5184885-5184945)
chr8 (166-225)||(14684215-14684275)
chr8 (126-213)||(30466675-30466763)
chr8 (126-213)||(41454838-41454926)
chr8 (148-259)||(43413852-43413963)
chr8 (179-226)||(33570427-33570474)
chr8 (126-254)||(23139070-23139200)
chr8 (180-226)||(26900470-26900516)
chr8 (139-259)||(4259868-4259988)
[»] chr6 (21 HSPs)
chr6 (266-645)||(7022664-7023041)
chr6 (266-645)||(34252152-34252531)
chr6 (266-645)||(26292128-26292505)
chr6 (307-604)||(10570535-10570828)
chr6 (126-259)||(6228226-6228359)
chr6 (126-259)||(17216954-17217087)
chr6 (126-259)||(20415528-20415661)
chr6 (266-384)||(32286120-32286238)
chr6 (142-209)||(35065505-35065572)
chr6 (126-259)||(18903333-18903466)
chr6 (126-249)||(4854282-4854405)
chr6 (135-259)||(19748104-19748227)
chr6 (137-181)||(9357163-9357207)
chr6 (179-259)||(11611419-11611498)
chr6 (179-226)||(3448402-3448449)
chr6 (179-226)||(22983630-22983677)
chr6 (179-226)||(23804731-23804778)
chr6 (179-217)||(17347304-17347342)
chr6 (179-260)||(3974491-3974571)
chr6 (135-259)||(7164700-7164823)
chr6 (177-226)||(25020526-25020575)
[»] chr4 (25 HSPs)
chr4 (266-645)||(19816186-19816563)
chr4 (266-465)||(21375056-21375255)
chr4 (294-530)||(1804489-1804727)
chr4 (135-254)||(11491190-11491309)
chr4 (126-254)||(50815703-50815831)
chr4 (126-215)||(27862840-27862930)
chr4 (135-259)||(48404103-48404227)
chr4 (126-259)||(40406926-40407060)
chr4 (120-259)||(46283112-46283251)
chr4 (125-259)||(16556446-16556580)
chr4 (562-645)||(21374969-21375052)
chr4 (123-259)||(36993034-36993170)
chr4 (122-213)||(43362179-43362271)
chr4 (126-259)||(51974743-51974876)
chr4 (139-259)||(45847892-45848012)
chr4 (137-248)||(25234835-25234946)
chr4 (162-226)||(39992868-39992932)
chr4 (137-216)||(41271986-41272066)
chr4 (139-254)||(45355689-45355803)
chr4 (139-254)||(45369430-45369544)
chr4 (167-225)||(29269314-29269373)
chr4 (126-259)||(38690662-38690795)
chr4 (165-226)||(6202638-6202702)
chr4 (181-226)||(29560005-29560050)
chr4 (181-226)||(32885740-32885785)
[»] chr7 (25 HSPs)
chr7 (266-645)||(5952732-5953109)
chr7 (306-506)||(38024628-38024828)
chr7 (125-259)||(27454006-27454141)
chr7 (135-254)||(3889771-3889891)
chr7 (126-259)||(48433676-48433809)
chr7 (122-231)||(48619789-48619897)
chr7 (143-254)||(4956063-4956174)
chr7 (135-259)||(28914843-28914968)
chr7 (126-260)||(46266664-46266798)
chr7 (126-231)||(24029981-24030086)
chr7 (266-368)||(33192782-33192884)
chr7 (135-231)||(12166087-12166183)
chr7 (394-468)||(33192694-33192768)
chr7 (126-231)||(40273817-40273922)
chr7 (126-254)||(5228067-5228194)
chr7 (135-259)||(31793473-31793597)
chr7 (496-623)||(13583408-13583533)
chr7 (179-226)||(17997736-17997783)
chr7 (179-226)||(22741255-22741302)
chr7 (179-226)||(33202552-33202599)
chr7 (179-259)||(29658240-29658317)
chr7 (132-252)||(3961381-3961501)
chr7 (172-225)||(5748932-5748985)
chr7 (126-254)||(33248773-33248901)
chr7 (179-224)||(38025391-38025436)
[»] chr3 (28 HSPs)
chr3 (293-645)||(29018479-29018831)
chr3 (266-645)||(55428802-55429174)
chr3 (122-254)||(9320930-9321062)
chr3 (126-261)||(47864632-47864767)
chr3 (126-254)||(33528176-33528304)
chr3 (126-254)||(7517936-7518064)
chr3 (126-254)||(50381710-50381838)
chr3 (135-254)||(1102667-1102786)
chr3 (372-564)||(17065116-17065307)
chr3 (126-254)||(46798578-46798706)
chr3 (132-196)||(30745198-30745262)
chr3 (179-226)||(36727461-36727508)
chr3 (126-259)||(11483609-11483742)
chr3 (179-265)||(29645787-29645872)
chr3 (136-189)||(37756448-37756502)
chr3 (181-226)||(13616072-13616117)
chr3 (132-176)||(11661213-11661257)
chr3 (140-259)||(16141319-16141438)
chr3 (126-213)||(32421344-32421432)
chr3 (124-259)||(39739268-39739403)
chr3 (148-254)||(31435472-31435578)
chr3 (179-226)||(31698583-31698630)
chr3 (132-250)||(43897604-43897722)
chr3 (179-226)||(50724417-50724464)
chr3 (179-226)||(50788384-50788431)
chr3 (126-259)||(45431623-45431756)
chr3 (135-251)||(166793-166909)
chr3 (181-226)||(335028-335073)
[»] chr2 (19 HSPs)
chr2 (262-524)||(9992764-9993025)
chr2 (266-514)||(9388715-9388963)
chr2 (490-646)||(29763131-29763285)
chr2 (306-380)||(7812953-7813027)
chr2 (167-254)||(34018043-34018128)
chr2 (135-259)||(33065223-33065347)
chr2 (135-259)||(34107500-34107623)
chr2 (126-254)||(43027151-43027279)
chr2 (182-226)||(17239954-17239998)
chr2 (167-226)||(20122473-20122533)
chr2 (135-246)||(25783193-25783303)
chr2 (132-168)||(45201625-45201661)
chr2 (179-226)||(9796947-9796994)
chr2 (179-226)||(36665480-36665527)
chr2 (137-259)||(41749954-41750075)
chr2 (135-251)||(9564543-9564660)
chr2 (179-225)||(32891649-32891695)
chr2 (135-259)||(33482608-33482732)
chr2 (167-259)||(37886191-37886283)
[»] chr5 (23 HSPs)
chr5 (478-645)||(35946809-35946974)
chr5 (394-643)||(28175138-28175377)
chr5 (126-260)||(31250143-31250277)
chr5 (126-259)||(38503223-38503356)
chr5 (135-249)||(17077366-17077480)
chr5 (135-248)||(1572115-1572228)
chr5 (194-248)||(29413539-29413593)
chr5 (135-231)||(43227871-43227967)
chr5 (179-259)||(930904-930983)
chr5 (181-225)||(26302493-26302537)
chr5 (134-189)||(31154153-31154209)
chr5 (179-226)||(4985809-4985856)
chr5 (179-226)||(18478053-18478100)
chr5 (179-226)||(19059002-19059049)
chr5 (179-226)||(20762331-20762378)
chr5 (193-248)||(26671646-26671701)
chr5 (193-248)||(26943243-26943298)
chr5 (124-259)||(42208911-42209045)
chr5 (479-533)||(6642297-6642351)
chr5 (132-189)||(31154281-31154339)
chr5 (182-259)||(15680867-15680943)
chr5 (132-177)||(15696209-15696254)
chr5 (134-254)||(33545358-33545477)
[»] scaffold0001 (1 HSPs)
scaffold0001 (126-259)||(419708-419841)
[»] scaffold0204 (1 HSPs)
scaffold0204 (135-231)||(10581-10676)
[»] scaffold0126 (1 HSPs)
scaffold0126 (167-217)||(22857-22907)
[»] scaffold0020 (1 HSPs)
scaffold0020 (181-226)||(166648-166693)


Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 719
Target Start/End: Original strand, 33931060 - 33931781
Alignment:
Q  1 aaaaagaaaatatgagaagttgagtgttgcatgaaaattaatagtattcaaagagtatttaaatataagtggacatgtttaatcnnnnnnnnnnnnn--- 97  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||                    
T  33931060 aaaaataaaatatgagaagttgaatgttgcatgaaaattaaaagtattcaaagagtatttaaatataagtggacatgtttaatctttttttttttttttt 33931159  T
Q  98 atatcaagaagaaatgataaaacaagttcccataagtttagctcatttgataagggataatgtataatttatgtaggggctg-ggttcgaaccttggaca 196  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||| ||||||||||||||| ||||||| || | ||| || ||||||||||  |||||    
T  33931160 atatcaagaagaaatgataaaacaagtccgcatgagtttagctcatctgataagggataatgcataatttgtgcaagggttgtggttcgaaccccggaca 33931259  T
Q  197 caccacttattcatcttaaaag-gtgaattcctctaatcattaggctacttgaccaaaacaaaatttgataaaacaaaatcaaattacaatctcatacga 295  Q
    |||||||||||||| ||||||  ||||||| ||||| ||| |||| |||||||  |||| |||  ||||||||||||||||||| |||||||||||||||    
T  33931260 caccacttattcatattaaaaatgtgaatttctctagtcactaggttacttgataaaaaaaaa--ttgataaaacaaaatcaaactacaatctcatacga 33931357  T
Q  296 gcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtagtaa 395  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |||| |||||||| ||||||||||||    
T  33931358 gcaattccaagagcatcatccagaagaaaatgatgcagttgagcaggttaaaaaattcaagactttagagcatccgaaaaagaagcaccttgtgtagtaa 33931457  T
Q  396 gccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatg 495  Q
      |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33931458 ttcaatccgcacactcgttgccttgatggagggtatgatgaaaataaaaaatctaatctcgatgttgcagttggagaatcaaactaatcagagaagcatg 33931557  T
Q  496 aggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacgcaatac 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33931558 aggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacgcaatac 33931657  T
Q  596 gaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaataatgatttaatctatatccacataaaagtatcacttcaatttttgaaatcc 695  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33931658 gaagaccataaaaaatggcatacaattcggccgtcaaacaagaagtaataattatttaatctatatccacataaaagtatcacttcaatttttgaaatcc 33931757  T
Q  696 ctaatattctgtatgagaacaaag 719  Q
    |||| |||||||||||||||||||    
T  33931758 ctaaaattctgtatgagaacaaag 33931781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 266 - 645
Target Start/End: Complemental strand, 5171481 - 5171104
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    |||||||||||||| ||||||||||  ||||||| |||| ||||||||| ||||||  ||||||||| ||||| | || ||| ||| |||||||||||||    
T  5171481 aaaacaaaatcaaactacaatctcaagcgagcaactccaagagcatcattcagaagggaatgatgcagttgaggagggcaaacaatccaagactttagag 5171382  T
Q  366 catacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcag 465  Q
     || ||||||||||||| | ||  ||| |||||||||||||||||||||||||||| | | ||||| |||||||| || |||  |||||||||| |||||    
T  5171381 tatccgaagaagaagcaccatgcttagcaagccaatccgcacactcgttgccttgacggagggtataatgaaaattaacaattcaatctcgatgttgcag 5171282  T
Q  466 ttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataa 565  Q
    ||||| ||||  ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||  ||||| ||||||| ||||||| |||| |||||    
T  5171281 ttggacaatctgactaatcagaggagcatgaggatgatgagattggacatccgacatgattaaatc--aagagccatcctagaatctgactcaagaataa 5171184  T
Q  566 tgttcatgtgacccgcatcatacgcaatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    ||||  |||  ||||||||||||||||||| |||||||| |||||||||||| |||||||||| |||  |||||||||||    
T  5171183 tgtttttgtagcccgcatcatacgcaatacaaaggccatgaaaaatggcatacaattcggccgccaagtaagaagtaata 5171104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 375 - 645
Target Start/End: Complemental strand, 6771130 - 6770862
Alignment:
Q  375 aagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaat 474  Q
    |||||||||| ||  ||| ||||||||||||||||||||| |||||| | | || ||| ||||||| || |||  |||||||||| |||||||||| |||    
T  6771130 aagaagcatcatgcttagcaagccaatccgcacactcgttaccttgacggagggcatgctgaaaatgaacaattcaatctcgatgttgcagttggacaat 6771031  T
Q  475 caaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgt 574  Q
    |  ||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||  ||| ||||||| ||| |||||||| ||||||||||||||    
T  6771030 ctgactaatcagaggagcatgaggatgatgagattcgacattcgacatgattaaatcaa--gagccatcctataatttgattcaagaataatgttcatgt 6770933  T
Q  575 gacccgcatcatacgcaatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    |||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||| ||||||||||||    
T  6770932 gacccgcatcatacgcaatatgaagaccataaaaaatggcatacaattcggccgccaagcaagaagtaata 6770862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 394 - 533
Target Start/End: Complemental strand, 39989408 - 39989270
Alignment:
Q  394 aagccaatccgcacactcgttgccttgatgta-tggtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaagc 492  Q
    |||||||||||||||||||||||||||  | |  |||||||||||||| || |||| |||||||||| ||||||| || | || |||| |||||||||||    
T  39989408 aagccaatccgcacactcgttgccttggcggaggggtatgatgaaaattaacaatccaatctcgatgatgcagttagacattctaacttatcagagaagc 39989309  T
Q  493 atgaggatgatgaggttggacatccgacatgattaaatcaa 533  Q
    || |||||||||||||| |  |||| ||||||||| |||||    
T  39989308 ataaggatgatgaggtttg--atccaacatgattagatcaa 39989270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 15417916 - 15417783
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| ||| |||||||| | ||| | ||||||||||||| |||||| || |||||| ||||||||||||||| || | |||||    
T  15417916 cccatgagcttagctcatttggtaaaggataatgcacaatatgtgtaggggctggggttcgaagctcggacaccccacttattcatctttaa-gatgaat 15417818  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | ||||| ||| |||||||||||||||||| ||||    
T  15417817 ttctctagtcactaggctacttgaccaaaaaaaaa 15417783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 7438616 - 7438750
Alignment:
Q  125 tcccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaa 223  Q
    |||||| || |||||||||||| |||||||||||| | ||||| |||||||| | ||||||||||   |||||| ||||||||||||||| |||||||||    
T  7438616 tcccatgagcttagctcatttggtaagggataatgcacaatttgtgtaggggtcggggttcgaactccggacaccccacttattcatctt-aaaggtgaa 7438714  T
Q  224 ttcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    || || ||  || ||| |||||||||||||| ||||    
T  7438715 tttctttagccactagactacttgaccaaaaaaaaa 7438750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 19424051 - 19424170
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    ||||||||||||||||||||||||| ||| | |||| ||||| | |||||||||||  |||||| ||||||||||| |||  |||||||||| |||||      
T  19424051 ttagctcatttgataagggataatgcatattatatgcaggggtcggggttcgaaccccggacaccccacttattcacctt-taaggtgaatttctctagc 19424149  T
Q  234 cattaggctacttgaccaaaa 254  Q
    |  ||||||||||||||||||    
T  19424150 cgctaggctacttgaccaaaa 19424170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 25800423 - 25800304
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    |||| ||||| | |||||||||||| | ||||||||||||| | ||| ||| ||||  |||||| |||||||||||||||||| |||||||| || |||     
T  25800423 ttagttcattcggtaagggataatgcacaatttatgtagggtccggggttccaaccccggacaccccacttattcatcttaaa-ggtgaatttctttaac 25800325  T
Q  234 cattaggctacttgaccaaaa 254  Q
    ||||| |||||||||||||||    
T  25800324 cattaagctacttgaccaaaa 25800304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 24134723 - 24134590
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || |||||| ||| ||||||||  |||||| |||||||||||||||  |||||||||    
T  24134723 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctt-taaggtgaat 24134625  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | |||||  || |||||| ||||||||||| ||||    
T  24134624 ttctctagccactaggctgcttgaccaaaaaaaaa 24134590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 30735837 - 30735957
Alignment:
Q  139 ctcatttgataagggataatgtataatttatgtaggggctgg-gttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcatt 237  Q
    |||||||| |||||||||||| | ||||| || |||||| || ||| ||||| |||||||  ||||||||||||| ||| |||||||| |||||| || |    
T  30735837 ctcatttggtaagggataatgcacaatttgtgcaggggccggagtttgaaccctggacaccacacttattcatctcaaa-ggtgaatttctctaaccact 30735935  T
Q  238 aggctacttgaccaaaacaaaa 259  Q
    |||||||||||| |||| ||||    
T  30735936 aggctacttgacaaaaaaaaaa 30735957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 50065006 - 50065134
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggg-gctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    |||||||| ||||||||||||||||||||||||| | ||| | || ||||  | ||||||||| || |||||| |||||||||||||||  |||||||||    
T  50065006 cccataagcttagctcatttgataagggataatgcacaatatgtgcagggaccggggttcgaatctcggacaccccacttattcatctt-taaggtgaat 50065104  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | |||||  || || ||||||| |||||||    
T  50065105 ttctctagccactaagctacttcaccaaaa 50065134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 48497315 - 48497184
Alignment:
Q  123 gttcccataagtttagctcatttgataagggataatgtataatttatgtaggggctgg-gttcgaaccttggacacaccacttattcatcttaaaaggtg 221  Q
    |||||||| ||||||||||||||| |||||||||||| | ||| | || |||||| || ||||||| |  |||||| ||| |||||||||||  |||||     
T  48497315 gttcccatgagtttagctcatttggtaagggataatgcacaatatgtgcaggggccggagttcgaatcccggacactccatttattcatctt-taaggta 48497217  T
Q  222 aattcctctaatcattaggctacttgaccaaaa 254  Q
    |||| |||||  || ||||||||||||||||||    
T  48497216 aatttctctagccactaggctacttgaccaaaa 48497184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 25421850 - 25421957
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || ||| |||||||| ||||||| |||| | ||||| ||||||||||||| ||| ||||   ||||| ||||||||||| ||||||||||||||    
T  25421850 cccatgagcttaactcatttggtaagggacaatgcacaatttgtgtaggggctggggttcaaaccccagacactccacttattcaccttaaaaggtgaat 25421949  T
Q  225 tcctctaa 232  Q
    | ||||||    
T  25421950 ttctctaa 25421957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 42946543 - 42946438
Alignment:
Q  149 aagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttg 247  Q
    ||||||||||| ||| | |||| |||||||||| || |||||  |||||| ||||||||||| |||||| |||||||| |||||  | ||||||||||||    
T  42946543 aagggataatgcatattatatgcaggggctggggtttgaaccccggacaccccacttattcaccttaaa-ggtgaatttctctagccgttaggctacttg 42946445  T
Q  248 accaaaa 254  Q
    |||||||    
T  42946444 accaaaa 42946438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 43109328 - 43109204
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    |||||||||||| |||||||||||| | ||| | || |||||| ||| ||||||||  ||||||  || ||||||||||| || |||||||| |||||      
T  43109328 ttagctcatttggtaagggataatgcaaaatatgtgcaggggccggggttcgaaccccggacacctcatttattcatctttaa-ggtgaatttctctagc 43109230  T
Q  234 cattaggctacttgaccaaaacaaaa 259  Q
    || |||||||||||||||||| ||||    
T  43109229 cactaggctacttgaccaaaaaaaaa 43109204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 49619968 - 49620096
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || ||||| | ||||||  |||  |||||| ||||||||||||||| ||| ||||||    
T  49619968 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcagaccccggacaccccacttattcatctttaaa-gtgaat 49620066  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | |||||  || ||||||||||||||||||    
T  49620067 ttctctagccactaggctacttgaccaaaa 49620096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 6771221 - 6771137
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaa 350  Q
    ||||||||| |||| ||||||||||  ||| ||| |||| ||||||||||||||||  ||||||||| ||||| | |||||||||    
T  6771221 aaaacaaaaccaaactacaatctcaagcgaacaactccaagagcatcatccagaagggaatgatgcagttgagaagggtaaaaaa 6771137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 260
Target Start/End: Complemental strand, 14262821 - 14262686
Alignment:
Q  125 tcccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaa 223  Q
    |||||| || ||| ||||||||||||||||||||| | ||| |||| ||||| | |||||||||||  |||||| | |||||||||||||  ||||||||    
T  14262821 tcccatgagattaactcatttgataagggataatgcacaatatatgcaggggtcggggttcgaaccccggacaccctacttattcatctt-taaggtgaa 14262723  T
Q  224 ttcctctaatcattaggctacttgaccaaaacaaaat 260  Q
    || |||||  || || |||| ||||| |||| |||||    
T  14262722 tttctctagccactaagctatttgacaaaaaaaaaat 14262686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 29936713 - 29936647
Alignment:
Q  192 ggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    |||||| ||||||||||||||||||| ||||||| |||||  ||||||||||||||| ||||| ||||    
T  29936713 ggacaccccacttattcatcttaaaa-gtgaatttctctagccattaggctacttgaacaaaaaaaaa 29936647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 47651867 - 47652000
Alignment:
Q  125 tcccataagtttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtgaa 223  Q
    |||||| || |||||||||||| |||||||||||| | ||| | || ||||||| ||||||||| | | ||||  |||||||||||| ||  ||||||||    
T  47651867 tcccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaatcctagacatcccacttattcatttt--aaggtgaa 47651964  T
Q  224 ttcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    || |||||  || | ||||||||||| |||| ||||    
T  47651965 tttctctagccactgggctacttgacaaaaaaaaaa 47652000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 9527476 - 9527523
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||| ||||| ||||||| |||||||||||||||| |||||||||||    
T  9527476 gggtttgaaccctggacaccccacttattcatcttataaggtgaattc 9527523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 24253742 - 24253692
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg 176  Q
    ||||| || |||||||| |||||||||||||||| |||||||||| |||||    
T  24253742 cccatgagcttagctcacttgataagggataatgcataatttatgcagggg 24253692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 226
Target Start/End: Complemental strand, 34560382 - 34560336
Alignment:
Q  180 ggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||||||||| |||||| ||||||||||| |||| |||||||||||    
T  34560382 ggttcgaacctcggacaccccacttattcaccttataaggtgaattc 34560336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 50011503 - 50011608
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || ||||||| |||||||||||   ||||  |||||||||||||||  |||||||||    
T  50011503 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaaccccagacatcccacttattcatctt-taaggtgaat 50011601  T
Q  225 tcctcta 231  Q
    | |||||    
T  50011602 ttctcta 50011608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 4684263 - 4684171
Alignment:
Q  139 ctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctcta 231  Q
    |||||||| |||||||||||||| ||| |||||||||| | |||||||||  | ||| || ||| |||||||||||  |||||||||| |||||    
T  4684263 ctcatttggtaagggataatgtacaatatatgtaggggtcggggttcgaagttcggataccccatttattcatctt-taaggtgaattactcta 4684171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 34702417 - 34702324
Alignment:
Q  121 aagttcccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatctt 213  Q
    |||| ||||| || |||||||||||| |||||||||||| | ||| | || ||||| | |||||||||||  ||||||  ||||||||||||||    
T  34702417 aagtccccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacacctcacttattcatctt 34702324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 39433410 - 39433455
Alignment:
Q  181 gttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||| |||||| ||||||||||| |||| |||||||||||    
T  39433410 gttcgaacctcggacaccccacttattcaccttataaggtgaattc 39433455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 39434670 - 39434715
Alignment:
Q  181 gttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||| |||||| ||||||||||| |||| |||||||||||    
T  39434670 gttcgaacctcggacaccccacttattcaccttataaggtgaattc 39434715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 40061439 - 40061567
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || ||| |||||||| ||||||||| || | ||| | | ||||||||||| |||||||   |||||| |||||||||||||||  |||||| ||    
T  40061439 cccatgagcttaactcatttggtaagggatagtgcacaatatgtataggggctggggttcgaactccggacaccccacttattcatctt-taaggtggat 40061537  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | |||||  || ||||||||||||| ||||    
T  40061538 ttctctagccactaggctacttgacaaaaa 40061567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 266 - 645
Target Start/End: Original strand, 15917096 - 15917474
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattc-aagactttaga 364  Q
    ||||||||| |||| |||||||||| |||||||| |||| ||||||||| ||||||  ||||| ||| ||||| | || |||||| || |||||||||||    
T  15917096 aaaacaaaaccaaactacaatctcaaacgagcaactccaagagcatcattcagaagggaatgacgcagttgaggagggcaaaaaaatccaagactttaga 15917195  T
Q  365 gcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgca 464  Q
    |||||||||||||||||||| ||  ||| |||||||||||||||| |||| |||||| | | |||||||||||||| || |||  |||||||||| ||||    
T  15917196 gcatacgaagaagaagcatcatgcttagcaagccaatccgcacacgcgttaccttgacggagggtatgatgaaaattaacaatgcaatctcgatgttgca 15917295  T
Q  465 gttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaata 564  Q
    |||||| ||||  |||||| |||| |||||| |||||||||| ||||||||||||||||||||||||  ||||| |||||||||||||||||||| ||||    
T  15917296 gttggacaatctgactaattagaggagcatggggatgatgagattggacatccgacatgattaaatc--aagagccatcctaaaatctgattcaagaata 15917393  T
Q  565 atgttcatgtgacccgcatcatacgcaatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |||| ||||| ||| ||||||||||||    
T  15917394 atgttcttgtgacccgcatcatacgcaatacgaaggccatgaaaaatgacatacaatttggccgccaagcaagaagtaata 15917474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 345 - 617
Target Start/End: Original strand, 8567528 - 8567798
Alignment:
Q  345 aaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaa 444  Q
    ||||||| |||||||||||||||| ||||||||||||||| |   ||| ||| ||||| |||||||||||||||| |   | |||||||||||||| ||     
T  8567528 aaaaaatccaagactttagagcatccgaagaagaagcatcgtacttagcaagtcaatctgcacactcgttgccttaacagagggtatgatgaaaattaat 8567627  T
Q  445 aatctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcc 544  Q
    |||  |||||||||| | |||||||| ||||  |||||||| || ||||||| |||||||||||| ||||||||||||||||| ||||||||   || |     
T  8567628 aattcaatctcgatgttacagttggacaatctgactaatcaaaggagcatgaagatgatgaggttcgacatccgacatgattagatcaaaagc--cacca 8567725  T
Q  545 taaaatctgattcaaaaataatgttcatgtgacccgcatcatacgcaatacgaaggccataaaaaatggcata 617  Q
    || |||||||||||| ||||||||||   ||||||||||||||||||||||||||||| | ||||||| ||||    
T  8567726 tagaatctgattcaagaataatgttcccttgacccgcatcatacgcaatacgaaggccgtgaaaaatgacata 8567798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 135 - 254
Target Start/End: Original strand, 22652688 - 22652807
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctgg-gttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    ||||||||||||||||||||||||| ||||||| || |||||| || |||||||||  |||||| ||| |||||||| || ||||||||||| |||||      
T  22652688 ttagctcatttgataagggataatgcataatttgtgcaggggccggtgttcgaaccccggacaccccaattattcatgtt-aaaggtgaatttctctagc 22652786  T
Q  234 cattaggctacttgaccaaaa 254  Q
    || || |||||||||| ||||    
T  22652787 cactaagctacttgacaaaaa 22652807  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 260
Target Start/End: Complemental strand, 1360224 - 1360100
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    ||||||||||||  || |||||||| | ||| | ||||||||||||| ||||||||  |||||| |||||||||||| |||||  ||||||| ||||||     
T  1360224 ttagctcatttggcaaaggataatgcacaatatgtgtaggggctggggttcgaaccccggacaccccacttattcattttaaa--gtgaatttctctaac 1360127  T
Q  234 cattaggctacttgaccaaaacaaaat 260  Q
    || ||||||||||||| |||| |||||    
T  1360126 cactaggctacttgacaaaaaaaaaat 1360100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 44828532 - 44828398
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||||| || |||| ||||| ||||||||   |||||  ||||||||||||||  |||||||||    
T  44828532 cccatgagcttagctcatttggtaagggataatgcacaatttgtgcagggtctggggttcgaaccccagacaccacacttattcatcttttaaggtgaat 44828433  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | || ||  |||||| |||||||||||||| ||||    
T  44828432 ttctttagccattagactacttgaccaaaaaaaaa 44828398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 45536710 - 45536804
Alignment:
Q  122 agttcccataagtttagctcatttgataagggataatgtataatttatgtaggggctgg-gttcgaaccttggacacaccacttattcatcttaa 215  Q
    ||||||||| || |||| |||||||||||||||||||| | ||||| || |||||| || |||||||||  |||||| |||||||||||||||||    
T  45536710 agttcccatgaggttaggtcatttgataagggataatgcaaaatttgtgcaggggccggagttcgaaccccggacaccccacttattcatcttaa 45536804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 259
Target Start/End: Complemental strand, 38289337 - 38289201
Alignment:
Q  123 gttcccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtg 221  Q
    ||||||||||| |||||||||||| |||||||||||| | ||| | || ||||| | ||||||||||||   |||| |||||||||||||||  ||||||    
T  38289337 gttcccataagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaacctcaaacaccccacttattcatctt-taaggtg 38289239  T
Q  222 aattcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    |||| |||||  || || |||||||||| |||| ||||    
T  38289238 aatttctctagccactaagctacttgacaaaaaaaaaa 38289201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 8350432 - 8350566
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctgg-gttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    |||||||| ||| |||||||| |||| ||||||  | ||| |||| |||||| || |||||||||| |||||| |||||||||||||||  ||| |||||    
T  8350432 cccataagcttaactcatttggtaagtgataatacacaatatatgcaggggccggagttcgaacctcggacaccccacttattcatcttttaagatgaat 8350531  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    |  ||||| || ||| ||||||||| |||| ||||    
T  8350532 ttatctaaccactagactacttgacaaaaaaaaaa 8350566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 3311435 - 3311527
Alignment:
Q  125 tcccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaa 216  Q
    |||||| || ||| ||||||||  ||||||||||||| |||||||| ||||  | |||||||||||  |||||| ||||||||||||||||||    
T  3311435 tcccatgagcttaactcatttggcaagggataatgtacaatttatgcagggatcagggttcgaaccccggacaccccacttattcatcttaaa 3311527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 1032566 - 1032671
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || ||||||| |||||||||||   ||||| |||||||||||||||  |||||||||    
T  1032566 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggctggggttcgaaccccagacaccccacttattcatctt-taaggtgaat 1032664  T
Q  225 tcctcta 231  Q
    | |||||    
T  1032665 ttctcta 1032671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 43508537 - 43508448
Alignment:
Q  136 tagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaatt 225  Q
    ||||||| ||||||||||| |||| ||||| |||||||||| | ||||| |||||  |||||| ||||||||||| ||| |||||||||||    
T  43508537 tagctcagttgataagggacaatgcataatatatgtaggggccggggtttgaaccccggacaccccacttattcacctt-aaaggtgaatt 43508448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 19733168 - 19733040
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    |||||||| |||||||||||| |||||||||||| ||||| |||| ||||| | ||||||||| |  | ||||   | |||||||||||  |||||||||    
T  19733168 cccataagcttagctcatttggtaagggataatgcataatatatgcaggggtcggggttcgaatcccgaacacctaaattattcatctt-taaggtgaat 19733070  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | |||||| || || |||||||||| ||||    
T  19733069 ttctctaaccactaagctacttgacaaaaa 19733040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 29114107 - 29114230
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctg-ggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    ||||||||||||||||||||||||| | ||||| || |||||| | |||||| |||| | |||| ||||||||| ||| | |||||||||||| |||||     
T  29114107 ttagctcatttgataagggataatgcacaatttgtgcaggggccgcggttcgtacctcgaacaccccacttatt-atcgt-aaaggtgaattcttctaac 29114204  T
Q  234 cattaggctacttgaccaaaacaaaa 259  Q
    || | | ||||||||| |||| ||||    
T  29114205 cactcgactacttgacaaaaaaaaaa 29114230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 43456742 - 43456661
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgt-aggggctgggttcgaaccttggacacaccacttattcatcttaa 215  Q
    |||||||||||| |||||||||||| | ||| ||||| |||| | |||||||||||  |||||| |||||||||||| ||||    
T  43456742 ttagctcatttggtaagggataatgcacaatatatgtaagggtcggggttcgaaccccggacaccccacttattcattttaa 43456661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 5184945 - 5184885
Alignment:
Q  167 tatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||| |||||||||| |||||||| ||||||| ||||||||||| |||| |||||||||||    
T  5184945 tatgcaggggctggggttcgaaccctggacaccccacttattcaccttataaggtgaattc 5184885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 14684275 - 14684215
Alignment:
Q  166 ttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaatt 225  Q
    |||||||||||| ||| ||||||| | |||||| |||||||||||||||| ||||||||||    
T  14684275 ttatgtaggggccggggttcgaacttcggacaccccacttattcatcttataaggtgaatt 14684215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 30466675 - 30466763
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatctt 213  Q
    ||||| || |||||||||||| |||||| ||||| | ||| | || |||||||||| |||||||||  ||||| |||||||||||||||    
T  30466675 cccatgagcttagctcatttggtaagggctaatgcacaatatgtgcaggggctggggttcgaacctcagacaccccacttattcatctt 30466763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 41454926 - 41454838
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatctt 213  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || |||||| ||| ||||||||  |||||| |||||||||||||||    
T  41454926 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctt 41454838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 259
Target Start/End: Complemental strand, 43413963 - 43413852
Alignment:
Q  148 taagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctactt 246  Q
    |||||||||||| | ||||| || |||||||||| |||||| |    |||| ||||||||||||||| || |||||||| |||||  || ||||||||||    
T  43413963 taagggataatgcacaatttgtgcaggggctggggttcgaatcccaaacaccccacttattcatctttaa-ggtgaatttctctagccactaggctactt 43413865  T
Q  247 gaccaaaacaaaa 259  Q
    |||||||| ||||    
T  43413864 gaccaaaaaaaaa 43413852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 33570474 - 33570427
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||| |||||| ||||||||||| |||| |||||||||||    
T  33570474 gggttcgaacctcggacaccccacttattcaccttataaggtgaattc 33570427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 23139070 - 23139200
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctg-ggttcgaaccttggacacaccacttattcatctta-aaaggtgaa 223  Q
    ||||| || ||||||||||||| ||||||||||| | ||| | || |||||| | |||||||||    ||||| |||||||||||| |||  ||||||||    
T  23139070 cccatgagcttagctcatttgacaagggataatgcacaatgtgtgcaggggccgaggttcgaacaccagacaccccacttattcattttattaaggtgaa 23139169  T
Q  224 ttcctctaatcattaggctacttgaccaaaa 254  Q
    || ||||| ||| |  |||||||||||||||    
T  23139170 tttctctagtcactgagctacttgaccaaaa 23139200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 26900470 - 26900516
Alignment:
Q  180 ggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||| ||||| |||||| ||| ||||||||||||||||||||||||    
T  26900470 ggttcaaacctcggacaccccatttattcatcttaaaaggtgaattc 26900516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 259
Target Start/End: Original strand, 4259868 - 4259988
Alignment:
Q  139 ctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcatt 237  Q
    |||||||| |||||||||||| | ||| | || |||||| ||| ||| ||||  |||| | ||||||||||||||| || |||||||| |||||  || |    
T  4259868 ctcatttggtaagggataatgcacaatatgtgcaggggccggggttccaaccccggactccccacttattcatctttaa-ggtgaatttctctagccact 4259966  T
Q  238 aggctacttgaccaaaacaaaa 259  Q
    |||||||||||| |||| ||||    
T  4259967 aggctacttgacaaaaaaaaaa 4259988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 266 - 645
Target Start/End: Complemental strand, 7023041 - 7022664
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    ||||||||| ||||||||||||| |  ||||||| |||| ||||||||| |||||| |||||||||| ||||| | || ||| ||| ||| |||||||||    
T  7023041 aaaacaaaaccaaattacaatcttaagcgagcaactccaagagcatcattcagaaggaaatgatgcagttgaggagggcaaacaatccaatactttagag 7022942  T
Q  366 catacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcag 465  Q
    ||| ||||||||||||| | ||  ||| ||| |||||||||||||||||||||||| | | |||||||||||||| || |||| |||||||||| |||||    
T  7022941 catccgaagaagaagcaccatgcttagcaagtcaatccgcacactcgttgccttgacggagggtatgatgaaaattaacaatccaatctcgatgttgcag 7022842  T
Q  466 ttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataa 565  Q
    ||||| ||||  ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||  ||||| ||||||| ||||||| |||| |||||    
T  7022841 ttggacaatctgactaatcagaggagcatgaggatgatgagattggacatccgacatgattaaatc--aagagccatcctagaatctgactcaagaataa 7022744  T
Q  566 tgttcatgtgacccgcatcatacgcaatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    |||||||||  |||||| ||||||||||||||||||||| ||||||| |||| |||||||||| ||| ||||||||||||    
T  7022743 tgttcatgtagcccgcaccatacgcaatacgaaggccatgaaaaatgacatacaattcggccgccaagcaagaagtaata 7022664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 266 - 645
Target Start/End: Complemental strand, 34252531 - 34252152
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    ||||||||| |||| ||||||||||  ||||||| ||||  |||||||| ||||||  ||||||||| ||||| | || ||| ||| |||||||||||||    
T  34252531 aaaacaaaaccaaactacaatctcaagcgagcaactccaacagcatcattcagaagggaatgatgcagttgaggagggcaaacaatccaagactttagag 34252432  T
Q  366 catacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcag 465  Q
    ||| ||||||||||||| | ||  ||| |||||||||||||||| ||||||||||| | | |||||||||||||| || |||| |||||||||| |||||    
T  34252431 catccgaagaagaagcaccatgcttagcaagccaatccgcacacccgttgccttgacggagggtatgatgaaaattaacaatccaatctcgatgttgcag 34252332  T
Q  466 ttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatcc--gacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaat 563  Q
    ||||| ||||  ||||||||||| |||||||||||||| || ||||||||||  ||||||||||||||  ||||| ||||||| ||||| | |||| |||    
T  34252331 ttggacaatctgactaatcagaggagcatgaggatgataagattggacatccgagacatgattaaatc--aagagccatcctagaatctcactcaagaat 34252234  T
Q  564 aatgttcatgtgacccgcatcatacgcaatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    ||||||| |||  || |||||||||| |||||||||||||| |||||||||||| |||||||||| ||| ||||||||||||    
T  34252233 aatgttcttgtagcctgcatcatacgtaatacgaaggccatgaaaaatggcatacaattcggccgccaagcaagaagtaata 34252152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 266 - 645
Target Start/End: Original strand, 26292128 - 26292505
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    ||||||||| |||| |||||| |||  ||||||| |||| |||||||||| |||||  ||||||||| ||||| | || ||| ||| ||||| |||||||    
T  26292128 aaaacaaaaccaaactacaatttcaagcgagcaactccaagagcatcatcaagaagggaatgatgcagttgaggagggcaaacaatccaagagtttagag 26292227  T
Q  366 catacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcag 465  Q
    ||| ||||||||||||||  ||  ||| ||||||||||| ||||| |||||||||| | | ||| || ||||||| || |||| ||| |||||| ||||     
T  26292228 catccgaagaagaagcattatgcttagcaagccaatccgtacacttgttgccttgacggagggtctgttgaaaattaacaatccaatatcgatgttgcaa 26292327  T
Q  466 ttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataa 565  Q
    ||||| ||||  ||||||||||| ||||||||||||| ||| |||||||  ||||||| |||||||  ||||| | ||||| |||||||||||| |||||    
T  26292328 ttggaaaatccgactaatcagaggagcatgaggatgacgagattggacactcgacatgtttaaatc--aagagccctcctagaatctgattcaagaataa 26292425  T
Q  566 tgttcatgtgacccgcatcatacgcaatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    |||||||||  || ||||||||||||||||||||||||| |||||||||||| |||||||||| ||| ||||||||||||    
T  26292426 tgttcatgtagcctgcatcatacgcaatacgaaggccatgaaaaatggcatacaattcggccgccaagcaagaagtaata 26292505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 307 - 604
Target Start/End: Complemental strand, 10570828 - 10570535
Alignment:
Q  307 agcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgca 406  Q
    |||| ||||||||||| ||||||| | ||||  | || |||| ||  ||||||||| | ||| ||||||||||||| | ||  | | ||||||||| |||    
T  10570828 agcaacatccagaagagaatgatgtagttgatgagggcaaaatatctaagactttataacatccgaagaagaagcaccatgcttcgcaagccaatctgca 10570729  T
Q  407 cactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatgag 506  Q
    |  | |||||||| ||  | ||||  |||||||| || |||| |||||||||| |||||||| |  |||  |||||| |||| | || || ||||| |||    
T  10570728 c--ttgttgccttaatagagggtagaatgaaaattaacaatccaatctcgatgttgcagttgaactatctgactaataagaggaacacgatgatgacgag 10570631  T
Q  507 gttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacgcaatacgaaggccat 604  Q
    |||||| ||||||||| ||||||| ||  ||| ||||||| |||||||||||| |||||||||||  || ||||||||||||||||||||||| ||||    
T  10570630 gttggatatccgacataattaaattaa--gagccatcctagaatctgattcaagaataatgttcacatggcccgcatcatacgcaatacgaagaccat 10570535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 6228359 - 6228226
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || |||||| ||| ||||||||  |||||| ||||||||||||||| || |||||||    
T  6228359 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaa-ggtgaat 6228261  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | |||||  || |||||||||||||||||| ||||    
T  6228260 ttctctagccactaggctacttgaccaaaaaaaaa 6228226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 17216954 - 17217087
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| ||||| | |||||||| | | ||||||||   |||||| |||||||||||||||  |||||||||    
T  17216954 cccatgagcttagctcatttggtaagggataatgcataatatgtgtaggggtcggagttcgaactccggacaccccacttattcatctt-taaggtgaat 17217052  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | |||||  || ||||||||||||| |||| ||||    
T  17217053 ttctctagccactaggctacttgacaaaaaaaaaa 17217087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 20415661 - 20415528
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| ||||||||||||||  |||||||||||| | ||| | || ||||||  |||||||||||  |||||| |||||||||||||||  |||||||||    
T  20415661 cccatgagtttagctcattttgtaagggataatgcacaatatgtgcaggggccagggttcgaaccccggacaccccacttattcatctt-taaggtgaat 20415563  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | |||||  || |||||| ||||||||||| ||||    
T  20415562 ttctctagccactaggctgcttgaccaaaaaaaaa 20415528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 266 - 384
Target Start/End: Complemental strand, 32286238 - 32286120
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    ||||||||| |||| |||||| |||  | ||||| |||| ||||||||||||||||  ||||||||| ||||| | || ||| ||| ||| | |||||||    
T  32286238 aaaacaaaaccaaactacaatttcaagctagcaactccaagagcatcatccagaagggaatgatgcagttgaggagggcaaacaatccaaaattttagag 32286139  T
Q  366 catacgaagaagaagcatc 384  Q
    ||| |||||||||||||||    
T  32286138 catccgaagaagaagcatc 32286120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 35065572 - 35065505
Alignment:
Q  142 atttgataagggataatgtataatttatgtaggggctgggttcgaaccttggacacaccacttattca 209  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||||||  |||||| | |||||||||    
T  35065572 atttggtaagggataatgcataatttatgtaggggccgggttcgaaccacggacactctacttattca 35065505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 18903466 - 18903333
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || ||||||||||||  ||||||||||  | ||| | || |||||| ||| ||||||||  |||||| ||||||||||||||| || |||||||    
T  18903466 cccatgagcttagctcatttggcaagggataatacacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctttaa-ggtgaat 18903368  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | |||||  || |||||||||||||||||| ||||    
T  18903367 ttctctagccactaggctacttgaccaaaaaaaaa 18903333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 4854405 - 4854282
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || ||||||||||||  ||||||||||||| ||| | || |||||| ||| ||||||||  |||||| |||||||||||||||  ||||| |||    
T  4854405 cccatgagcttagctcatttggcaagggataatgtacaatgtgtgcaggggccggggttcgaaccccggacaccccacttattcatctt-taaggtaaat 4854307  T
Q  225 tcctctaatcattaggctacttgac 249  Q
    | |||||| || ||| |||||||||    
T  4854306 ttctctaaccactagcctacttgac 4854282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 19748104 - 19748227
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    |||||||||||| |||||||||||| | ||| | || ||||  | |||||||||||  |||||| |||||||||||| ||  |||||||||| |||| |     
T  19748104 ttagctcatttggtaagggataatgcacaatatgtgcagggattggggttcgaaccacggacaccccacttattcatttt--aaggtgaatttctctgac 19748201  T
Q  234 cattaggctacttgaccaaaacaaaa 259  Q
    || ||||||||||||| |||| ||||    
T  19748202 cactaggctacttgacaaaaaaaaaa 19748227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 9357163 - 9357207
Alignment:
Q  137 agctcatttgataagggataatgtataatttatgtaggggctggg 181  Q
    ||||||||||||||||||||||||| ||||| || ||||||||||    
T  9357163 agctcatttgataagggataatgtacaatttgtgcaggggctggg 9357207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 179 - 259
Target Start/End: Original strand, 11611419 - 11611498
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    ||||||||||| ||||||| |||||||||||||||  || ||||||| |||||   ||||||||||||||| |||| ||||    
T  11611419 gggttcgaaccctggacaccccacttattcatctt-taatgtgaatttctctagcaattaggctacttgacaaaaaaaaaa 11611498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 3448402 - 3448449
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||    
T  3448402 gggttcgaaccccggacaccccacttattcatcttataaggtgaattc 3448449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 22983630 - 22983677
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||    
T  22983630 gggttcgaaccccggacaccccacttattcatcttataaggtgaattc 22983677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 23804778 - 23804731
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||    
T  23804778 gggttcgaaccccggacaccccacttattcatcttataaggtgaattc 23804731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 17347304 - 17347342
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaa 217  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  17347304 gggttcgaaccttggacaccccacttattcaccttaaaa 17347342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 3974491 - 3974571
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttgaccaaaacaaaat 260  Q
    |||||||||| | |||| | |||||||||||||||  |||||||||| ||||||  | ||||||| |||||||||| |||||    
T  3974491 gggttcgaacttcggactccccacttattcatctt-taaggtgaatttctctaactactaggctatttgaccaaaaaaaaat 3974571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 7164700 - 7164823
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctgg-gttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    ||||||||||||||||||||||||| ||  | ||||||||||| || |||||||||  |  ||| ||||||||||| |||  |||||||||| |||||      
T  7164700 ttagctcatttgataagggataatgcat-ttatatgtaggggccggagttcgaaccccgaccaccccacttattcacctt-taaggtgaatttctctagc 7164797  T
Q  234 cattaggctacttgaccaaaacaaaa 259  Q
    |  ||| |||||||| ||||||||||    
T  7164798 cgctagactacttgaacaaaacaaaa 7164823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 25020575 - 25020526
Alignment:
Q  177 ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||||  |||||| ||||||||||| |||| |||||||||||    
T  25020575 ctgggttcgaaccccggacaccccacttattcaccttataaggtgaattc 25020526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 1e-80; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 266 - 645
Target Start/End: Original strand, 19816186 - 19816563
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    ||||||||| |||| ||||||||||  ||| ||| |||| |||||| |||||||||  || |||||| ||||| | || ||||||| ||||||||||||     
T  19816186 aaaacaaaaacaaactacaatctcaagcgaacaactccaagagcataatccagaagggaacgatgcagttgaggagggcaaaaaatccaagactttagat 19816285  T
Q  366 catacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcag 465  Q
    ||| ||||||||||||| | ||  ||| ||||||||||||||||||||| |||||| | |  ||||||||||||| || |||| ||||| |||| |||||    
T  19816286 catccgaagaagaagcaccatgcttagcaagccaatccgcacactcgttaccttgacggagagtatgatgaaaatgaacaatccaatcttgatgttgcag 19816385  T
Q  466 ttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataa 565  Q
    ||||| ||||  ||||||||| | ||||||||||||||||| ||  ||||||||||||||||||||  ||||| ||||||| |||||||||||| |||||    
T  19816386 ttggacaatctgactaatcaggggagcatgaggatgatgagattcaacatccgacatgattaaatc--aagagccatcctagaatctgattcaagaataa 19816483  T
Q  566 tgttcatgtgacccgcatcatacgcaatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    || |||| || ||||||||||| |||||||||||||||| |||||| ||||| ||||| |||| ||| ||||||||||||    
T  19816484 tgctcatatggcccgcatcatatgcaatacgaaggccatgaaaaatagcatacaattcagccgccaagcaagaagtaata 19816563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 266 - 465
Target Start/End: Complemental strand, 21375255 - 21375056
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    |||||||||  ||| |||||||||   ||||||| ||||  |||||||||||||||  ||| ||||| || || | || ||| ||| |||||||||||||    
T  21375255 aaaacaaaaataaactacaatctcgagcgagcaactccaatagcatcatccagaagggaataatgcagtttaggagggcaaacaatccaagactttagag 21375156  T
Q  366 catacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcag 465  Q
    ||| ||||||||||||| | ||  ||| |||||||||||||||||||||||||||||| | |||||||||||||| || ||||||||||||||| |||||    
T  21375155 cattcgaagaagaagcaccatgcttagcaagccaatccgcacactcgttgccttgatggaaggtatgatgaaaattaacaatctaatctcgatgttgcag 21375056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 294 - 530
Target Start/End: Complemental strand, 1804727 - 1804489
Alignment:
Q  294 gagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtagt 393  Q
    |||||| |||| |||||||||||||||   ||||||| ||||||| | |  ||| ||| ||||||||||||| || ||||||||||||| | ||  |||     
T  1804727 gagcaactccaagagcatcatccagaaaggaatgatgtaattgaggaggacaaacaatccaagactttagagtatccgaagaagaagcaccatgcttagc 1804628  T
Q  394 aagccaatccgcacactcgttgccttgatgtatg--gtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaag 491  Q
    ||| ||||| ||||||||||| |||||| | | |  ||||||||||||| || |||| ||| |||||| ||||| |||| |||| |||||||||||  ||    
T  1804627 aagtcaatctgcacactcgttaccttgacggaggctgtatgatgaaaattaacaatccaatatcgatgttgcaggtggacaatctaactaatcagaagag 1804528  T
Q  492 catgaggatgatgaggttggacatccgacatgattaaat 530  Q
    ||||| ||||||||| ||||||||||||||| |||||||    
T  1804527 catgaagatgatgagcttggacatccgacataattaaat 1804489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 11491309 - 11491190
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctgg-gttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    ||||||||||||| ||||||||||| ||||||| || |||||| || |||||||||  |||||| |||||||||||||||  |||||||||| |||||      
T  11491309 ttagctcatttgacaagggataatgcataatttgtgcaggggccggagttcgaaccccggacaccccacttattcatctt-taaggtgaatttctctagc 11491211  T
Q  234 cattaggctacttgaccaaaa 254  Q
    || ||||||||||||||||||    
T  11491210 cactaggctacttgaccaaaa 11491190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 50815703 - 50815831
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||||||| |||||||| | ||||| || ||||| | |||||||||||  |||||| |||| |||||||||| ||||||||||    
T  50815703 cccatgagcttagctcatttgataaaggataatgcacaatttgtgcaggggccggggttcgaaccccggacaccccacatattcatctt-aaaggtgaat 50815801  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | |||||  || ||||||||||||||||||    
T  50815802 ttctctagccactaggctacttgaccaaaa 50815831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 27862930 - 27862840
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaa 215  Q
    ||||| || ||||||||||||||||||||||||| | ||||| || ||||||| |||||||||||  |||||| |||||||||||||||||    
T  27862930 cccatgagcttagctcatttgataagggataatgcacaatttgtgcaggggctggggttcgaaccccggacaccccacttattcatcttaa 27862840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 48404227 - 48404103
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtagg-ggctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    ||||||||||||||||| ||||||||||||| | |||||| | | |||||||||||  ||||||  ||||||||||||||  |||||||||| || ||      
T  48404227 ttagctcatttgataagagataatgtataatatgtgtaggtgtcggggttcgaaccccggacacctcacttattcatctt-taaggtgaatttctttagc 48404129  T
Q  234 cattaggctacttgaccaaaacaaaa 259  Q
    || ||||||||||||| |||| ||||    
T  48404128 cactaggctacttgacaaaaaaaaaa 48404103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 40407060 - 40406926
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg--ttcgaaccttggacacaccacttattcatcttaaaaggtgaa 223  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || |||||| |||  ||||||||  |||||| |||||||||||||||  ||||||||    
T  40407060 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccgggggttcgaaccccggacaccccacttattcatctt-taaggtgaa 40406962  T
Q  224 ttcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    || |||||  || |||||| ||||||||||| ||||    
T  40406961 tttctctagccactaggctgcttgaccaaaaaaaaa 40406926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 46283112 - 46283251
Alignment:
Q  120 caagttcccataagtttagctcatttgataagggataatgtataatttatgtag-gggctgggttcgaaccttggacacaccacttattcatcttaaaag 218  Q
    ||||| ||||| || ||| |||||||| |||||||||||| | ||| | || || || | |||||||||||  |||||| |||||||||||||||  |||    
T  46283112 caagtccccatgagcttacctcatttggtaagggataatgcacaatatgtgcagcggccggggttcgaaccccggacaccccacttattcatctt-taag 46283210  T
Q  219 gtgaattcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    ||||||| ||||| ||| ||| |||||||||||||| ||||    
T  46283211 gtgaatttctctagtcactagactacttgaccaaaaaaaaa 46283251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 16556446 - 16556580
Alignment:
Q  125 tcccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaa 223  Q
    |||||| || |||||||||||| |||||||||||| | ||| | || ||||| | |||||||||||  | |||| |||||||||||||||  ||||||||    
T  16556446 tcccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcggggttcgaaccccgaacaccccacttattcatctt-taaggtgaa 16556544  T
Q  224 ttcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    || |||||  || ||||||||||||| |||| ||||    
T  16556545 tttctctagccactaggctacttgacaaaaaaaaaa 16556580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 562 - 645
Target Start/End: Complemental strand, 21375052 - 21374969
Alignment:
Q  562 ataatgttcatgtgacccgcatcatacgcaatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    ||||||||| |||| ||||||| ||| ||||||||||||| || |||||||||||| |||| | |||||||  |||||||||||    
T  21375052 ataatgttcctgtggcccgcattatatgcaatacgaaggcaatgaaaaatggcatacaatttgtccgtcaagaaagaagtaata 21374969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 123 - 259
Target Start/End: Original strand, 36993034 - 36993170
Alignment:
Q  123 gttcccataagtttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtg 221  Q
    |||||||| || ||||||||||||||||||||||||| | ||| | || ||||| | ||||| |||||  |||||| ||| |||||||||||  ||||||    
T  36993034 gttcccatgagcttagctcatttgataagggataatgcacaatatgtgaaggggttggggtttgaaccccggacaccccaattattcatctt-taaggtg 36993132  T
Q  222 aattcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    |||| |||||  || |||||||| |||| |||| ||||    
T  36993133 aatttctctagccactaggctacctgacaaaaaaaaaa 36993170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 43362271 - 43362179
Alignment:
Q  122 agttcccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatctt 213  Q
    ||||||||| || |||||||||||| |||||||||||| | ||| |||  ||||| | |||||||||||  |||||| |||||||||||||||    
T  43362271 agttcccatgagcttagctcatttgctaagggataatgcacaatatattcaggggtcggggttcgaaccccggacaccccacttattcatctt 43362179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 51974743 - 51974876
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || ||||| | || ||||||||| |||||  ||||||||| |||||  |||||||||    
T  51974743 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggtcgggattcgaacctcggacatcccacttatttatctt-taaggtgaat 51974841  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    |  ||||  || |||||||||||||||||| ||||    
T  51974842 ttatctagccactaggctacttgaccaaaaaaaaa 51974876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 45848012 - 45847892
Alignment:
Q  139 ctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcatt 237  Q
    ||||||||||||||||||||| ||||| | || ||||  | |||||||||||  |||||| |||||||||||||||  |||||||||| || ||  |  |    
T  45848012 ctcatttgataagggataatgcataatatgtgcagggatcggggttcgaaccccggacaccccacttattcatctt-taaggtgaatttctttagcccct 45847914  T
Q  238 aggctacttgaccaaaacaaaa 259  Q
    ||||| ||||||||||| ||||    
T  45847913 aggctgcttgaccaaaaaaaaa 45847892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 25234946 - 25234835
Alignment:
Q  137 agctcatttgataagggataatgtataatttatgtaggggctg-ggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatca 235  Q
    ||||||||||||||||||||||| | |||   |||||||| || ||||||||||   ||||| ||| |||||||||||  |||||||||| |||||| ||    
T  25234946 agctcatttgataagggataatgcacaataagtgtaggggttgaggttcgaaccccagacaccccagttattcatctt-taaggtgaatttctctaacca 25234848  T
Q  236 ttaggctacttga 248  Q
     ||| ||||||||    
T  25234847 ctagactacttga 25234835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 39992868 - 39992932
Alignment:
Q  162 taatttatgtaggggctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||| |||| ||||||||||||||||   ||||||| ||||||||||| |||| |||||||||||    
T  39992868 taatatatgcaggggctgggttcgaattctggacaccccacttattcaccttataaggtgaattc 39992932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 41272066 - 41271986
Alignment:
Q  137 agctcatttgataagggataatgtataatttatgtaggg-gctgggttcgaaccttggacacaccacttattcatcttaaa 216  Q
    ||||| |||| |||||||||||||| |||||||| ||||  | ||||||||||   |||||| ||||||||||||||||||    
T  41272066 agctcgtttggtaagggataatgtacaatttatgcagggttcagggttcgaactccggacaccccacttattcatcttaaa 41271986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 45355803 - 45355689
Alignment:
Q  139 ctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcatt 237  Q
    |||||||  |||||||||||| | ||| | |||||||| | |||||||||||  |||||| ||||||||||||||| || |||||||| |||||  || |    
T  45355803 ctcatttagtaagggataatgcacaatatgtgtaggggtcggggttcgaaccccggacac-ccacttattcatctttaa-ggtgaatttctctagccact 45355706  T
Q  238 aggctacttgaccaaaa 254  Q
    |||||||||||| ||||    
T  45355705 aggctacttgacaaaaa 45355689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 45369544 - 45369430
Alignment:
Q  139 ctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcatt 237  Q
    |||||||  |||||||||||| | ||| | |||||||| | |||||||||||  |||||| ||||||||||||||| || |||||||| |||||  || |    
T  45369544 ctcatttagtaagggataatgcacaatatgtgtaggggtcggggttcgaaccccggacac-ccacttattcatctttaa-ggtgaatttctctagccact 45369447  T
Q  238 aggctacttgaccaaaa 254  Q
    |||||||||||| ||||    
T  45369446 aggctacttgacaaaaa 45369430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 29269373 - 29269314
Alignment:
Q  167 tatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaatt 225  Q
    ||||||||||||||| ||||||||  |||||| |||||||||||||||| | ||||||||    
T  29269373 tatgtaggggctgggattcgaaccccggacaccccacttattcatcttatatggtgaatt 29269314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 38690662 - 38690795
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||| ||| |||||||||||| ||| | |||| ||||| | |||||||||||  |||||| |||||||||| || |  |||||||||    
T  38690662 cccatgagcttagctcacttggtaagggataatgcatattatatgcaggggtcggggttcgaaccccggacaccccacttattc-tcctttaaggtgaat 38690760  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | |||||  |  |||||||||| ||||||| ||||    
T  38690761 ttctctagccgctaggctacttaaccaaaaaaaaa 38690795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 6202638 - 6202702
Alignment:
Q  165 tttatgtaggggct-gggttcgaaccttggacacaccacttattcatctt--aaaaggtgaattc 226  Q
    |||||||||||||| |||||||||||  |||||| | |||||||||||||  |||||||||||||    
T  6202638 tttatgtaggggctagggttcgaaccccggacaccctacttattcatcttgaaaaaggtgaattc 6202702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 29560050 - 29560005
Alignment:
Q  181 gttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||| |||||||||  ||||||| ||||||||||||||||    
T  29560050 gttcgaacctcggacacaccgtttattcaccttaaaaggtgaattc 29560005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 32885740 - 32885785
Alignment:
Q  181 gttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||| |||||| ||||||||||| |||| |||||||||||    
T  32885740 gttcgaacctcggacaccccacttattcaccttataaggtgaattc 32885785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 6e-76; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 266 - 645
Target Start/End: Original strand, 5952732 - 5953109
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    ||||||||| |||| ||||||||||  |||| || |||| ||| |||||| | |||  ||||||  |  |||| | || | ||||| |||||||||||||    
T  5952732 aaaacaaaaccaaactacaatctcaagcgagtaactccaagagtatcatctaaaagggaatgatagagatgaggagggcagaaaatccaagactttagag 5952831  T
Q  366 catacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcag 465  Q
    ||| ||||||||||||| | ||  ||| ||||||||| ||||||||||| |||||| | | |||||| ||||||| || |||| |||||||||| |||||    
T  5952832 cattcgaagaagaagcaccatgcttagcaagccaatctgcacactcgttaccttgacgaagggtatgctgaaaatgaacaatccaatctcgatgttgcag 5952931  T
Q  466 ttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataa 565  Q
    ||||| ||||  |||||||| || ||||||||||||||||| ||||||||||||||||||||||||  ||| | ||||||| |||||||||||| |||||    
T  5952932 ttggacaatctgactaatcataggagcatgaggatgatgagattggacatccgacatgattaaatc--aagggccatcctagaatctgattcaagaataa 5953029  T
Q  566 tgttcatgtgacccgcatcatacgcaatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    |||||  ||| |||||||||||||||| ||||||||||| ||||||| |||| |||||||| | ||||||||||||||||    
T  5953030 tgttcccgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatacaattcggctgccaaacaagaagtaata 5953109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 306 - 506
Target Start/End: Complemental strand, 38024828 - 38024628
Alignment:
Q  306 gagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtagtaagccaatccgc 405  Q
    |||||||||||||| |  ||||||||| ||||| |  | ||| ||| ||| ||||| ||||||  |||||||||||||| ||  ||| ||| ||||||||    
T  38024828 gagcatcatccagatgggaatgatgcagttgaggagagcaaacaatccaaaactttggagcatctgaagaagaagcatcatgcttagcaagtcaatccgc 38024729  T
Q  406 acactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaagcatgaggatgatga 505  Q
    |||||||||||||||| | | |||||||||||||| || |||| |||||||||| |||||||||| ||||  ||||||||||| ||||||||||||||||    
T  38024728 acactcgttgccttgacggagggtatgatgaaaattaacaatccaatctcgatgttgcagttggacaatctgactaatcagaggagcatgaggatgatga 38024629  T
Q  506 g 506  Q
    |    
T  38024628 g 38024628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 27454006 - 27454141
Alignment:
Q  125 tcccataagtttagctcatttgataagggataatgtataatttatgtaggggctg-ggttcgaaccttggacacaccacttattcatcttaaaaggtgaa 223  Q
    |||||| || |||||||||||| |||||||||||| | ||||| || |||||  | ||||||||||| |||||| |||||||||||||||||||||||||    
T  27454006 tcccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggtcgaggttcgaacctcggacaccccacttattcatcttaaaaggtgaa 27454105  T
Q  224 ttcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    || |||||  || |||||||||||||||||| ||||    
T  27454106 tttctctagccactaggctacttgaccaaaaaaaaa 27454141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 3889891 - 3889771
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtagggg--ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaa 232  Q
    ||||||||||||| ||||||||||||| ||| |||| |||||  | |||||||||||  |||||| |||||||||||||||||| |||||||| ||||||    
T  3889891 ttagctcatttgacaagggataatgtacaatatatgcagggggccagggttcgaaccccggacaccccacttattcatcttaaa-ggtgaatttctctaa 3889793  T
Q  233 tcattaggctacttgaccaaaa 254  Q
     ||||||| |||||||||||||    
T  3889792 ccattaggttacttgaccaaaa 3889771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 48433809 - 48433676
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || |||||| ||| ||| ||||  |||||| ||||||||||||||| || |||||||    
T  48433809 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcaaaccccggacaccccacttattcatctttaa-ggtgaat 48433711  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | |||||  || |||||||||||||||||| ||||    
T  48433710 ttctctagccactaggctacttgaccaaaaaaaaa 48433676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 48619789 - 48619897
Alignment:
Q  122 agttcccataagtttagctcatttgataagggataatgtataatttatgtaggggctgggttcgaaccttggacacaccacttattcatcttaaaaggtg 221  Q
    ||||||||| |||||| |||||||| ||| |||||||||| ||| | || ||||| ||||||||||| |  ||||| |||||||||||||||  ||||||    
T  48619789 agttcccatgagtttaactcatttggtaaaggataatgtacaatatgtgcaggggttgggttcgaacttcagacactccacttattcatctt-taaggtg 48619887  T
Q  222 aattcctcta 231  Q
    |||| |||||    
T  48619888 aatttctcta 48619897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 4956174 - 4956063
Alignment:
Q  143 tttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggc 241  Q
    |||| |||||||||||| | ||| | || ||||| | ||||||||||| ||||||| |||||||||||||||  |||||||||| |||||  || |||||    
T  4956174 tttggtaagggataatgcacaatatgtgcaggggtcggggttcgaaccctggacaccccacttattcatctt-taaggtgaatttctctagccactaggc 4956076  T
Q  242 tacttgaccaaaa 254  Q
    |||||||||||||    
T  4956075 tacttgaccaaaa 4956063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 28914968 - 28914843
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtagggg--ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaa 232  Q
    ||||||||  || |||||||||||| ||| | |||| |||||  | |||||||||||  |||||| ||||||||||| ||| ||||||||||| |||||     
T  28914968 ttagctcacatggtaagggataatgcatattatatgcagggggccggggttcgaaccccggacaccccacttattca-ctttaaaggtgaatttctctag 28914870  T
Q  233 tcattaggctacttgaccaaaacaaaa 259  Q
     || |||||||||||||||||| ||||    
T  28914869 ccactaggctacttgaccaaaaaaaaa 28914843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 260
Target Start/End: Original strand, 46266664 - 46266798
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || ||| |||||||| |||||||||||| | ||||| ||  |||| | |||||||||||||| |||  ||||||||||||||| ||||||||||    
T  46266664 cccatgagcttaactcatttggtaagggataatgcacaatttgtgcgggggacggggttcgaaccttgaacatcccacttattcatctt-aaaggtgaat 46266762  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaat 260  Q
    |  ||||| || ||| ||||||||| |||| |||||    
T  46266763 ttatctaaccactagactacttgacaaaaaaaaaat 46266798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 24029981 - 24030086
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| |||||||||||||||||||||||||||| | ||| | |||||||| | |||||||||||   ||||| ||| |||||||||||  |||||||||    
T  24029981 cccatgagtttagctcatttgataagggataatgcacaatatgtgtaggggccggggttcgaaccccagacaccccatttattcatctt-taaggtgaat 24030079  T
Q  225 tcctcta 231  Q
    | |||||    
T  24030080 ttctcta 24030086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 33192884 - 33192782
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    |||| |||| |||| ||||||||||  ||||||| |||| ||||||||||||||||  ||||||| | ||||| | || ||| ||| |||||||||||||    
T  33192884 aaaagaaaaccaaactacaatctcaagcgagcaactccaagagcatcatccagaagggaatgatgtagttgaggagggcaaacaatccaagactttagag 33192785  T
Q  366 cat 368  Q
    |||    
T  33192784 cat 33192782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 12166087 - 12166183
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctcta 231  Q
    |||||||||||| |||||||||||| | ||||| || ||||||| |||||||||||   ||||| |||||||||||||||  |||||||||| |||||    
T  12166087 ttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaaccccagacaccccacttattcatctt-taaggtgaatttctcta 12166183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 468
Target Start/End: Complemental strand, 33192768 - 33192694
Alignment:
Q  394 aagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttg 468  Q
    |||||||| |||||||||||| |||||| | | |||||||||||||| || |||  |||||||||| ||||||||    
T  33192768 aagccaattcgcacactcgtttccttgacggagggtatgatgaaaattaacaattcaatctcgatgttgcagttg 33192694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 40273817 - 40273922
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || |||||| ||| ||||||||  |||||| |||||||||||||||  |||||||||    
T  40273817 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctt-taaggtgaat 40273915  T
Q  225 tcctcta 231  Q
    | |||||    
T  40273916 ttctcta 40273922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 5228067 - 5228194
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||| ||||||| |||||||| ||  |||||| |||||| ||| |||||| | ||||||| ||||||||||| |||  |||||||||    
T  5228067 cccatgagcttagctcacttgataaaggataatgcatt-tttatgcaggggccggggttcgaatcctggacaccccacttattcacctt-taaggtgaat 5228164  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | |||||  |  ||||||||||||||||||    
T  5228165 ttctctagccgctaggctacttgaccaaaa 5228194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 31793473 - 31793597
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    |||||||||||| |||||||||||| | ||| | || ||||| | |||||||||||  |||||| |||||||||||||||  |||||| ||| |||||      
T  31793473 ttagctcatttgttaagggataatgcacaatatgtgcaggggtcggggttcgaaccccggacaccccacttattcatctt-taaggtggatttctctagc 31793571  T
Q  234 cattaggctacttgaccaaaacaaaa 259  Q
    || |||| ||||||||| ||| ||||    
T  31793572 cactaggttacttgacccaaaaaaaa 31793597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 496 - 623
Target Start/End: Complemental strand, 13583533 - 13583408
Alignment:
Q  496 aggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacgcaatac 595  Q
    ||||||| ||||||| |||||| ||||||||| ||  || ||| || |||| |||| ||||||| ||||||| || |||| ||  ||||||| |||||||    
T  13583533 aggatgacgaggttgaacatccaacatgattagat--aatgagccaccctagaatcagattcaagaataatgctcttgtgtccaacatcatatgcaatac 13583436  T
Q  596 gaaggccataaaaaatggcatataattc 623  Q
    |||||| || |||  ||||||| |||||    
T  13583435 gaaggctatgaaaggtggcatacaattc 13583408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 17997783 - 17997736
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||||||||| ||||||| ||| ||||||| ||||||||||||||||    
T  17997783 gggttcgaaccctggacaccccatttattcaccttaaaaggtgaattc 17997736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 22741255 - 22741302
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||||||| || |||||| |||||||||||||||| |||||||||||    
T  22741255 gggttcgaatctcggacaccccacttattcatcttataaggtgaattc 22741302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 33202599 - 33202552
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||    
T  33202599 gggttcgaaccccggacaccccacttattcatcttataaggtgaattc 33202552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 29658317 - 29658240
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    |||||||||||  |||||| ||||||||||| |||| |||||||||||   ||  || |||||||||||||||||| ||||    
T  29658317 gggttcgaaccccggacaccccacttattcaccttataaggtgaattc---tagccactaggctacttgaccaaaaaaaaa 29658240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 3961501 - 3961381
Alignment:
Q  132 agtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctct 230  Q
    |||||| |||||||| ||| |||||||| | ||||| || || ||| ||| ||||||||  |||||  |||||||||||| ||||| |||||||| ||||    
T  3961501 agtttaactcatttggtaaaggataatgcacaatttgtgcagaggccggggttcgaaccccggacatcccacttattcattttaaa-ggtgaatttctct 3961403  T
Q  231 aatcattaggctacttgaccaa 252  Q
    |   | ||||||||||||||||    
T  3961402 agctactaggctacttgaccaa 3961381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 5748985 - 5748932
Alignment:
Q  172 aggggctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaatt 225  Q
    ||||||||||||||||||| |||||  ||||||||| |||||| ||| ||||||    
T  5748985 aggggctgggttcgaacctcggacatcccacttatttatcttataagttgaatt 5748932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 33248901 - 33248773
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||| ||| | ||| |||| || || | |||||||||||  |||||| | |||||||||||||  |||||||||    
T  33248901 cccatgagcttagctcatttggtaagggatgatgcacaatatatgcagaggtcggggttcgaaccccggacaccctacttattcatctt-taaggtgaat 33248803  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | || |  ||| ||| ||||||||||||||    
T  33248802 ttctttcgtcactagactacttgaccaaaa 33248773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 38025391 - 38025436
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    |||||||||||| |||||  |||||||||||||||| |||||||||    
T  38025391 gggttcgaacctcggacattccacttattcatcttataaggtgaat 38025436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 6e-76; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 293 - 645
Target Start/End: Original strand, 29018479 - 29018831
Alignment:
Q  293 cgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagagcatacgaagaagaagcatcttgtgtag 392  Q
    ||||||| |||| |||||||||||| |||  ||||||||| ||||| | || ||||| | ||||| ||||||||||| |||||||||||| | ||  | |    
T  29018479 cgagcaactccaagagcatcatccaaaagggaatgatgcagttgaggagggcaaaaactccaagattttagagcatatgaagaagaagcaccatgctttg 29018578  T
Q  393 taagccaatccgcaca--ctcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaa 490  Q
     |||||||||||||||  ||||||||||||| | |||| ||| |||||||  | |||| |||||||||| || ||||||| ||||  ||||||||||| |    
T  29018579 caagccaatccgcacacactcgttgccttgacggatggaatgttgaaaattgacaatccaatctcgatgttgtagttggacaatctgactaatcagagga 29018678  T
Q  491 gcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacgc 590  Q
    ||||||||||||||||||||||||||||||||||||| |||  |||||||| | || ||||| |||||| ||||||||||||||||||||||||| || |    
T  29018679 gcatgaggatgatgaggttggacatccgacatgattagatc--aagagtcaccttagaatctaattcaagaataatgttcatgtgacccgcatcacacac 29018776  T
Q  591 aatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    |||||||||||||| |||||||||||| |||| ||| | ||| ||||||||||||    
T  29018777 aatacgaaggccatgaaaaatggcatacaatttggcagccaagcaagaagtaata 29018831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 266 - 645
Target Start/End: Original strand, 55428802 - 55429174
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    ||||||||| |||| |||||||| |  | | ||| |||| ||||||||||||||||  || |||||| |||||   || ||||||| |||||||||| ||    
T  55428802 aaaacaaaaccaaactacaatcttaagcaaacaactccaagagcatcatccagaagggaacgatgcagttgaggggggcaaaaaatccaagactttaaag 55428901  T
Q  366 catacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcag 465  Q
    ||| | || |||||||| | ||  ||| ||||||||||||||||||||| |||||| | | |||||||||||||| || |||| ||||| ||||          
T  55428902 catccaaataagaagcaccatgcttagcaagccaatccgcacactcgttaccttgacggagggtatgatgaaaatgaacaatccaatctagatg------ 55428995  T
Q  466 ttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataa 565  Q
    ||||| ||||  ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| ||   ||||||  |||||||||||| |||||    
T  55428996 ttggacaatctgactaatcagaggagcatgaggatgatgagattcgacatccgacatgattaaatcaatagc--catcctggaatctgattcaagaataa 55429093  T
Q  566 tgttcatgtgacccgcatcatacgcaatacgaaggccat-aaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    |||||||||| |||||||||||||||||||||||||| |  |||||||||||| ||||| || | ||| || |||||||||    
T  55429094 tgttcatgtggcccgcatcatacgcaatacgaaggccgtgcaaaaatggcatacaattcagctgccaagcaggaagtaata 55429174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 9321062 - 9320930
Alignment:
Q  122 agttcccataagtttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggt 220  Q
    |||| |||| |||||||||||||||||||||||||||||| ||||| || ||||| | ||||||||| |  | |||| ||||||||||||||| |||| |    
T  9321062 agtttccatgagtttagctcatttgataagggataatgtacaatttgtgcaggggttggggttcgaaacccgaacaccccacttattcatctt-aaagat 9320964  T
Q  221 gaattcctctaatcattaggctacttgaccaaaa 254  Q
    ||||| |||||| || ||||||||||||| ||||    
T  9320963 gaatttctctaaccactaggctacttgacaaaaa 9320930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 126 - 261
Target Start/End: Original strand, 47864632 - 47864767
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    |||||||| |||||||||||| |||||||||||| | ||| | || ||||| | |||||||||||  |||||| |||||||||||||||  |||||||||    
T  47864632 cccataagcttagctcatttggtaagggataatgcacaatatgtgcaggggttggggttcgaaccccggacaccccacttattcatctt-taaggtgaat 47864730  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaatt 261  Q
    | |||||  || |||||||||||||||||| ||||||    
T  47864731 ttctctagccactaggctacttgaccaaaaaaaaatt 47864767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 33528304 - 33528176
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||||| || ||||||| |||||||||||   ||||| |||||||||||||||  |||||||||    
T  33528304 cccatgagcttagctcatttggtaagggataatgcacaatttgtgcaggggctggggttcgaaccccagacaccccacttattcatctt-taaggtgaat 33528206  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | |||||  || ||||||||||||||||||    
T  33528205 ttctctagccactaggctacttgaccaaaa 33528176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 7517936 - 7518064
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctg-ggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| ||||||||| || | ||||| || ||| || | ||||||||||  | |||| |||||||| ||||||||||| |||||    
T  7517936 cccattagcttagctcatttggtaagggatattgcacaatttgtgcaggagccgcggttcgaaccccgaacaccccacttatccatcttaaaag-tgaat 7518034  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    |||||||  |||||||||||||||| ||||    
T  7518035 tcctctagccattaggctacttgacaaaaa 7518064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 50381710 - 50381838
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || ||| |||||||| |||||||||||| | ||| |||| ||||| | ||||||||| |  |||||| ||||||||||||||| || |||||||    
T  50381710 cccatgagcttaactcatttggtaagggataatgcacaatatatgcaggggtcggggttcgaatcccggacaccccacttattcatctttaa-ggtgaat 50381808  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | |||||  ||||||||| |||||||||||    
T  50381809 ttctctagccattaggctgcttgaccaaaa 50381838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 135 - 254
Target Start/End: Complemental strand, 1102786 - 1102667
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    ||||||||  || |||||||||||| |||||||||| ||||| | | ||||||||| ||||||| ||||||||||| |||  |||||||||| |||||      
T  1102786 ttagctcacctggtaagggataatgcataatttatgcaggggacggagttcgaaccatggacaccccacttattcacctt-taaggtgaatttctctagc 1102688  T
Q  234 cattaggctacttgaccaaaa 254  Q
    |  ||||||||||||||||||    
T  1102687 cgctaggctacttgaccaaaa 1102667  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 564
Target Start/End: Original strand, 17065116 - 17065307
Alignment:
Q  372 aagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttggag 471  Q
    ||||||||||| | ||| ||| ||| |||| || |||||||||||||||||| |  ||||||||||||| || ||||  |||||||   || || ||||     
T  17065116 aagaagaagcaccatgtttagcaagtcaattcgtacactcgttgccttgatggagagtatgatgaaaattaacaatcctatctcgacaatggagctggac 17065215  T
Q  472 aatcaaactaa-tcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaata 564  Q
    |||| |||||| | | | || ||  ||||||||||||||||| || |||||| ||||||||  |||||||| |||| |||| ||||||| ||||    
T  17065216 aatctaactaattaaaaaaaacaaaaggatgatgaggttggaaattcgacataattaaatc--aagagtcaccctagaatcggattcaagaata 17065307  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 46798578 - 46798706
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || ||| |||||||| | |||||||||| | ||| | || |||||| ||| |||||||| ||||||| |||||||||||||||  |||||  ||    
T  46798578 cccatgagcttaactcatttggtgagggataatgcacaatatgtgcaggggccgggattcgaaccctggacaccccacttattcatctt-taaggtagat 46798676  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | |||||| || ||||||||||||||||||    
T  46798677 ttctctaaccactaggctacttgaccaaaa 46798706  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 30745262 - 30745198
Alignment:
Q  132 agtttagctcatttgataagggataatgtataatttatgtaggggctgggttcgaaccttggaca 196  Q
    |||||||||||||||||||||||||||| ||||| |||  ||||| ||| ||||||||| |||||    
T  30745262 agtttagctcatttgataagggataatgcataatatatacaggggttggattcgaacctcggaca 30745198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 36727508 - 36727461
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||| |||||| |||||||||||||||| |||||||||||    
T  36727508 gggttcgaacctcggacaccccacttattcatcttataaggtgaattc 36727461  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 11483609 - 11483742
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || ||||| | ||||||||||   |||||| |||||||||||||||  |||||||||    
T  11483609 cccatgagcttagctcatttggtaagggataatgcaaaatatgtgcaggggccagggttcgaactccggacaccccacttattcatctt-taaggtgaat 11483707  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | |||||   | ||| |||||||||||||| ||||    
T  11483708 ttctctagcaactagactacttgaccaaaaaaaaa 11483742  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 29645872 - 29645787
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttgaccaaaacaaaatttgat 265  Q
    |||||||||||  |||||| |||||||||||||||  |||||||||| |||||  || ||| ||||||||| |||| ||||||||||    
T  29645872 gggttcgaaccccggacaccccacttattcatctt-taaggtgaatttctctagccactagactacttgacaaaaaaaaaatttgat 29645787  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 37756502 - 37756448
Alignment:
Q  136 tagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaacc 189  Q
    ||||||| |||||||||||||||| |||||||||| ||||||| |||||||||||    
T  37756502 tagctcacttgataagggataatgcataatttatgcaggggctggggttcgaacc 37756448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 13616117 - 13616072
Alignment:
Q  181 gttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||    
T  13616117 gttcgaacctcggacaccccacttattcatcttataaggtgaattc 13616072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 11661257 - 11661213
Alignment:
Q  132 agtttagctcatttgataagggataatgtataatttatgtagggg 176  Q
    ||||||||||| |||||||||||||||| ||||||||| ||||||    
T  11661257 agtttagctcacttgataagggataatgcataatttatatagggg 11661213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 16141438 - 16141319
Alignment:
Q  140 tcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcatta 238  Q
    |||||||||||||||||||| | ||| | |  | |||||||| |||||||    ||||| |||||||||||||||||| ||| ||||  ||||| || ||    
T  16141438 tcatttgataagggataatgcacaatatgtacaagggctggggttcgaactccagacaccccacttattcatcttaaa-ggtaaatttatctaaccacta 16141340  T
Q  239 ggctacttgaccaaaacaaaa 259  Q
    |||||||||||||||| ||||    
T  16141339 ggctacttgaccaaaaaaaaa 16141319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 32421344 - 32421432
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatctt 213  Q
    ||||| || ||||||||| || |||||||||||| ||||| |||| ||||| | |||||||||||| | || | |||||||||||||||    
T  32421344 cccatgagcttagctcatctggtaagggataatgcataatatatgcaggggtcggggttcgaacctcgaactccccacttattcatctt 32421432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 39739268 - 39739403
Alignment:
Q  124 ttcccataagtttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtga 222  Q
    ||||||| || |||||||||||| |||||||||||| | ||| | || ||||  | |||||||||||  ||||||  ||||||||||||||  |||||||    
T  39739268 ttcccatgagcttagctcatttggtaagggataatgcacaatatgtgcagggattggggttcgaaccccggacacctcacttattcatctt-taaggtga 39739366  T
Q  223 attcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    ||| |||||  || ||| ||||||||| |||| ||||    
T  39739367 atttctctagccactagactacttgacaaaaaaaaaa 39739403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 254
Target Start/End: Complemental strand, 31435578 - 31435472
Alignment:
Q  148 taagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctactt 246  Q
    |||||||||||| | ||| | |||||||| |||| ||||||||| |||||  |||||||||||||||  |||||||||| |||||  || ||| ||||||    
T  31435578 taagggataatgcacaatatgtgtaggggttggggttcgaacctcggacatcccacttattcatctt-taaggtgaatttctctagccactagactactt 31435480  T
Q  247 gaccaaaa 254  Q
    ||| ||||    
T  31435479 gacaaaaa 31435472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 31698583 - 31698630
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||| | |||| |||||||||||||||| |||||||||||    
T  31698583 gggttcgaacctcgaacaccccacttattcatcttataaggtgaattc 31698630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 43897604 - 43897722
Alignment:
Q  132 agtttagctcatttgataagggataatgtataatttatgtaggggctgg-gttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctct 230  Q
    ||||||||| | ||| ||||| | |||||||| | |||||||||  ||  ||||||||||  ||||| ||||||||||| ||| || |||||||| ||||    
T  43897604 agtttagcttacttggtaaggaaaaatgtatattatatgtagggattgatgttcgaacctcagacaccccacttattcacctttaa-ggtgaatttctct 43897702  T
Q  231 aatcattaggctacttgacc 250  Q
    || | |||||||||||||||    
T  43897703 aaccgttaggctacttgacc 43897722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 50724417 - 50724464
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||| |||||| ||||||||||| ||||||| ||||||||    
T  50724417 gggttcgaacctcggacaccccacttattcaccttaaaaagtgaattc 50724464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 50788431 - 50788384
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||| |||||| ||||||||||| ||||||| ||||||||    
T  50788431 gggttcgaacctcggacaccccacttattcaccttaaaaagtgaattc 50788384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 45431623 - 45431756
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||| ||| ||||||||||||  || |||||| ||||| | |||||||||||  |||||| ||||||||||| |||  |||||||||    
T  45431623 cccatgagcttagctcacttggtaagggataatgcgtattttatgcaggggtcagggttcgaaccccggacaccccacttattcacctt-taaggtgaat 45431721  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | | |||  |  |||||||||| ||||||| ||||    
T  45431722 ttccctagccgctaggctacttaaccaaaaaaaaa 45431756  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 251
Target Start/End: Original strand, 166793 - 166909
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    |||||||| ||| |||||||||||| |||||||||| ||||| | |||||||||||   |||||  |||||||||| ||| ||| ||||||| || ||      
T  166793 ttagctcacttggtaagggataatgcataatttatgcaggggccggggttcgaaccccagacacctcacttattcacctttaaa-gtgaatttctttagc 166891  T
Q  234 cattaggctacttgacca 251  Q
    |  |||||||||||||||    
T  166892 cgctaggctacttgacca 166909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 335073 - 335028
Alignment:
Q  181 gttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  335073 gttcgaaccctggacaccccacttattcaccttataaggtgaattc 335028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 262 - 524
Target Start/End: Original strand, 9992764 - 9993025
Alignment:
Q  262 tgataaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagacttt 361  Q
    ||||| || ||||||||| | ||||||||  |||| ||||||| |||||||||| | ||   ||||||||| ||||| | || |||  |||||||| |||    
T  9992764 tgatagaaaaaaatcaaacttcaatctcaatcgagtaattccaagagcatcatctataacggaatgatgcagttgaggagggcaaacgattcaagatttt 9992863  T
Q  362 agagcatacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgct 461  Q
    ||||||| ||||||||||||| | ||  ||||| |||||||||||||||||||||||||| | | |||||||||||||| || |||| |||||||| | |    
T  9992864 agagcatccgaagaagaagcaccatgcttagta-gccaatccgcacactcgttgccttgacgaagggtatgatgaaaattaacaatccaatctcgacgat 9992962  T
Q  462 gcagttggagaatcaaactaatcagagaagcatgaggatgatgaggttggacatccgacatga 524  Q
    ||||||||| |||   |||||||| || |||||||||||||| || |||||||||||||||||    
T  9992963 gcagttggacaatttgactaatcaaaggagcatgaggatgataagattggacatccgacatga 9993025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 266 - 514
Target Start/End: Original strand, 9388715 - 9388963
Alignment:
Q  266 aaaacaaaatcaaattacaatctcatacgagcaattccatgagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagag 365  Q
    |||||||||||||| ||||||||||  ||||||| |||| |||||| |||||||||  ||||||||| ||||| |    ||| ||| ||| |||||||||    
T  9388715 aaaacaaaatcaaactacaatctcaagcgagcaactccaagagcataatccagaagggaatgatgcagttgaggagcacaaacaatccaaaactttagag 9388814  T
Q  366 catacgaagaagaagcatcttgtgtagtaagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcag 465  Q
    ||| ||||||||||||| | |   ||| ||||||||| ||||||||  || |||||   | |||||||||||||| || |||| |||||||||| |||||    
T  9388815 catccgaagaagaagcaccatacttagcaagccaatctgcacactcaatgtcttgacagagggtatgatgaaaattaacaatccaatctcgatgttgcag 9388914  T
Q  466 ttggagaatcaaactaatcagagaagcatgaggatgatgaggttggaca 514  Q
    ||||| ||||  |||||| |||| ||||| ||||||||||  |||||||    
T  9388915 ttggacaatctgactaataagaggagcatcaggatgatgatattggaca 9388963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 490 - 646
Target Start/End: Complemental strand, 29763285 - 29763131
Alignment:
Q  490 agcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacg 589  Q
    ||||| |||||||| | |||||||||| ||| ||||||||||||  ||| || ||||  |||  |||||| |||||||||| |||| ||| |||||||||    
T  29763285 agcataaggatgataaagttggacatctgacgtgattaaatcaa--gagccaccctagtatcaaattcaagaataatgttcttgtgccccacatcatacg 29763188  T
Q  590 caatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaataa 646  Q
     |||||||||| ||| ||||||| |||||||||| | ||  || |||||||||||||    
T  29763187 taatacgaaggtcatgaaaaatgacatataattctgtcgctaagcaagaagtaataa 29763131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 7812953 - 7813027
Alignment:
Q  306 gagcatcatccagaagaaaatgatgcaattgagcaaggtaaaaaattcaagactttagagcatacgaagaagaag 380  Q
    |||||||||||| |||| ||||||||| | ||| |||| ||||||||||||||||||||||||  ||||||||||    
T  7812953 gagcatcatccaaaagagaatgatgcagtcgaggaaggcaaaaaattcaagactttagagcatctgaagaagaag 7813027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 254
Target Start/End: Complemental strand, 34018128 - 34018043
Alignment:
Q  167 tatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttgaccaaaa 254  Q
    |||| |||||||||| ||||||||| |||||| ||||||||||| |||| |||||||||   ||||| || |||||||| |||||||||    
T  34018128 tatgcaggggctggggttcgaacctcggacaccccacttattcaccttataaggtgaat---tctaaccactaggctacctgaccaaaa 34018043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 33065347 - 33065223
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    ||||||||||||  ||||||||||| | ||| | |||||||| | ||||||||||   | |||| | ||||||||||||| || |||||||| |||||      
T  33065347 ttagctcatttggcaagggataatgcacaatgtgtgtaggggtcggggttcgaactccgaacaccctacttattcatctttaa-ggtgaatttctctagc 33065249  T
Q  234 cattaggctacttgaccaaaacaaaa 259  Q
    || |||||||||||||||||| ||||    
T  33065248 cactaggctacttgaccaaaaaaaaa 33065223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 34107500 - 34107623
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    |||||||||||| |||||||||||| | ||| | || ||||| | |||||| ||||  |||||| |||||||||||||||  |||||||||| |||||      
T  34107500 ttagctcatttggtaagggataatgcacaatatgtgcaggggtcagggttcaaacc-cggacaccccacttattcatctt-taaggtgaatttctctagc 34107597  T
Q  234 cattaggctacttgaccaaaacaaaa 259  Q
    || ||||||||||||| |||| ||||    
T  34107598 cactaggctacttgacaaaaaaaaaa 34107623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 254
Target Start/End: Original strand, 43027151 - 43027279
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctg-ggttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || ||||||||||||||||||||||||| | ||||| ||  || |||| ||||||||||   ||||| ||| ||||||| |||  |||||||||    
T  43027151 cccatgagcttagctcatttgataagggataatgcacaatttgtgcgggtgctgaggttcgaaccccagacaccccatttattcacctt-taaggtgaat 43027249  T
Q  225 tcctctaatcattaggctacttgaccaaaa 254  Q
    | |||||  || ||| ||||||||||||||    
T  43027250 ttctctagccactagactacttgaccaaaa 43027279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 17239954 - 17239998
Alignment:
Q  182 ttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||    
T  17239954 ttcgaacctcggacaccccacttattcatcttataaggtgaattc 17239998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 20122533 - 20122473
Alignment:
Q  167 tatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||||||||| ||| ||||||||  |||||| |||||||||||||||| |||||||||||    
T  20122533 tatgtaggggccggggttcgaaccccggacacgccacttattcatcttataaggtgaattc 20122473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 25783303 - 25783193
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    |||||||| ||| | |||||||||| ||| | |||| ||||| | ||||||||||| ||||||| |||||||||||||||  |||||||| | |||||      
T  25783303 ttagctcacttggtgagggataatgcata-tatatgcaggggttagggttcgaaccctggacaccccacttattcatctt-caaggtgaagttctctagc 25783206  T
Q  234 cattaggctactt 246  Q
    |||||||||||||    
T  25783205 cattaggctactt 25783193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 45201625 - 45201661
Alignment:
Q  132 agtttagctcatttgataagggataatgtataattta 168  Q
    |||||||||||||||||||||||||||||||| ||||    
T  45201625 agtttagctcatttgataagggataatgtatatttta 45201661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 9796947 - 9796994
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||    
T  9796947 gggttcgaaccccggacaccccacttattcatcttataaggtgaattc 9796994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 36665480 - 36665527
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||||| |||||| |||||||||||| ||| |||||||||||    
T  36665480 gggttcgaacctcggacaccccacttattcattttataaggtgaattc 36665527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 259
Target Start/End: Original strand, 41749954 - 41750075
Alignment:
Q  137 agctcatttgataagggataatgtataatttatgtagggg-ctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatca 235  Q
    ||||||||||  ||||||||||| | ||| | |||||||| | ||||| |||||  |||||| ||||||||||||||| || |||||||| |||||  ||    
T  41749954 agctcatttggcaagggataatgcacaatgtgtgtaggggtcggggtttgaaccccggacac-ccacttattcatctttaa-ggtgaatttctctagcca 41750051  T
Q  236 ttaggctacttgaccaaaacaaaa 259  Q
     ||||||||||||| |||| ||||    
T  41750052 ctaggctacttgacaaaaaaaaaa 41750075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 251
Target Start/End: Original strand, 9564543 - 9564660
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgt-aggggctg-ggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaa 232  Q
    |||||||  ||| |||| ||||||||||||| ||||| ||||| || |||||| ||| |||||||  |||||||||| ||| ||| ||||||| |||||     
T  9564543 ttagctcgcttggtaagagataatgtataatatatgtaaggggttgtggttcgtaccctggacacctcacttattcacctttaaa-gtgaatttctctag 9564641  T
Q  233 tcattaggctacttgacca 251  Q
    || ||||||||| ||||||    
T  9564642 tcgttaggctacatgacca 9564660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 32891649 - 32891695
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaatt 225  Q
    ||||||||||| || |||| |||||||||||||||| ||||||||||    
T  32891649 gggttcgaaccctgaacaccccacttattcatcttacaaggtgaatt 32891695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 33482732 - 33482608
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctg-ggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    |||||||||||| ||||| || ||| | ||| |||| |||| | | |||||||||||  ||||| |||||||||||||||  ||| |||||| ||||||     
T  33482732 ttagctcatttggtaaggaatgatgcacaatatatgcagggaccgtggttcgaacctcagacaccccacttattcatctt-taagatgaatttctctaac 33482634  T
Q  234 cattaggctacttgaccaaaacaaaa 259  Q
    ||| || ||||||||| |||| ||||    
T  33482633 catcagactacttgacaaaaaaaaaa 33482608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 37886283 - 37886191
Alignment:
Q  167 tatgtaggggct-gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    |||||||| ||| ||||||||||| ||||||| ||||||||||| |||  |||||||||| |||||| | |||| |||||| || |||| ||||    
T  37886283 tatgtaggagctagggttcgaaccctggacaccccacttattcacctt-taaggtgaatttctctaaccgttagactactttacaaaaaaaaaa 37886191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 478 - 645
Target Start/End: Original strand, 35946809 - 35946974
Alignment:
Q  478 actaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgac 577  Q
    |||||||| || |||||  ||||||||| ||||| ||||| ||||||||| |||||  ||||||||| | ||| |||||||| ||||||||||||||| |    
T  35946809 actaatcaaaggagcatatggatgatgatgttgggcatccaacatgattagatcaa--gagtcatccaagaatatgattcaagaataatgttcatgtgtc 35946906  T
Q  578 ccgcatcatacgcaatacgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaata 645  Q
    |||||||||||||||||| |||| | | ||||||| |||  |||||||||||||||||||||||||||    
T  35946907 ccgcatcatacgcaatacaaaggtcttgaaaaatgacatgcaattcggccgtcaaacaagaagtaata 35946974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 394 - 643
Target Start/End: Complemental strand, 28175377 - 28175138
Alignment:
Q  394 aagccaatccgcacactcgttgccttgatgtatggtatgatgaaaataaaaaatctaatctcgatgctgcagttggagaatcaaactaatcagagaagca 493  Q
    ||||||||  |||||||||||||||||| | | |||||||||||||| || | || |||||||||| || | ||||| ||||  |||||| |||| ||||    
T  28175377 aagccaatttgcacactcgttgccttgacggagggtatgatgaaaattaacattccaatctcgatgttgtaattggacaatcttactaataagaggagca 28175278  T
Q  494 tgaggatgatgaggttggacatccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacgcaat 593  Q
    |||  |||||||||||| |||||||||| ||||| |||  ||||| || ||        ||||||| |||||||||||| |  || ||||||||| |||     
T  28175277 tgaaaatgatgaggttgaacatccgacaagattagatc--aagagccaccc--------gattcaagaataatgttcatattccctgcatcatacacaag 28175188  T
Q  594 acgaaggccataaaaaatggcatataattcggccgtcaaacaagaagtaa 643  Q
    ||||||| ||| ||||||||||||||||| | ||||||| |||| |||||    
T  28175187 acgaaggtcatgaaaaatggcatataatttgaccgtcaagcaagtagtaa 28175138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 260
Target Start/End: Original strand, 31250143 - 31250277
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || |||||| ||| ||||||||  |||||| |||||||||||||||  |||||||||    
T  31250143 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctt-taaggtgaat 31250241  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaat 260  Q
    | |||||  || |||||| ||||||||||| |||||    
T  31250242 ttctctagccactaggctgcttgaccaaaaaaaaat 31250277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 259
Target Start/End: Complemental strand, 38503356 - 38503223
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || |||||| ||| ||||||||  |||||| |||||||||||||||  |||||||||    
T  38503356 cccatgagcttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctt-taaggtgaat 38503258  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | |||||  || ||| |||||||||||||| ||||    
T  38503257 ttctctagccaatagactacttgaccaaaaaaaaa 38503223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 17077366 - 17077480
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    |||||||||||| |||||||||||| | ||||| || |||||  ||| ||||||||  |||||| ||||||||||||||| |||||||||||  ||||      
T  17077366 ttagctcatttggtaagggataatgcacaatttgtgcaggggtcgggattcgaaccccggacaccccacttattcatctt-aaaggtgaatttatctagc 17077464  T
Q  234 cattaggctacttgac 249  Q
    || |||||||||||||    
T  17077465 cactaggctacttgac 17077480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 1572115 - 1572228
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaat 233  Q
    |||||||||||| |||||||| ||| | | ||| || |||||||||| ||||||||  |||| | ||||||||||||||| ||||||||||| |||||      
T  1572115 ttagctcatttgttaagggattatgcacattttgtgcaggggctggggttcgaaccccggactccccacttattcatctt-aaaggtgaatttctctagc 1572213  T
Q  234 cattaggctacttga 248  Q
    || ||| ||||||||    
T  1572214 cactagactacttga 1572228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 29413593 - 29413539
Alignment:
Q  194 acacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttga 248  Q
    |||| ||||||||||||||||||||||||||| |||||| || ||| ||||||||    
T  29413593 acaccccacttattcatcttaaaaggtgaatttctctaaccactagactacttga 29413539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 43227871 - 43227967
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctcta 231  Q
    |||||||||||| |||||||||||| | ||| | || |||||| ||| ||||||||  |||||| |||||||||||||||  |||||||||| |||||    
T  43227871 ttagctcatttggtaagggataatgcacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctt-taaggtgaatttctcta 43227967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 930983 - 930904
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    ||||||||||||  ||||  ||||||||||||||| ||||||||||| ||||| ||| ||  |||||||||||||| ||||    
T  930983 gggttcgaacctcagacatcccacttattcatctt-aaaggtgaatttctctagtcactaaactacttgaccaaaaaaaaa 930904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 26302537 - 26302493
Alignment:
Q  181 gttcgaaccttggacacaccacttattcatcttaaaaggtgaatt 225  Q
    |||||||||| |||||| |||||||||||||||| ||||||||||    
T  26302537 gttcgaacctcggacaccccacttattcatcttataaggtgaatt 26302493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 31154209 - 31154153
Alignment:
Q  134 tttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaacc 189  Q
    ||||||||| |||||||||||||||  |||||||||| |||||||||| ||||||||    
T  31154209 tttagctcacttgataagggataatacataatttatgaaggggctgggattcgaacc 31154153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 4985809 - 4985856
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||||||||| ||||||| | ||||||||||||||||| ||||||||    
T  4985809 gggttcgaaccctggacaccctacttattcatcttaaaaagtgaattc 4985856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 18478053 - 18478100
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  18478053 gggttcgaaccctggacaccccacttattcaccttataaggtgaattc 18478100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 19059049 - 19059002
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  19059049 gggttcgaaccctggacaccccacttattcaccttataaggtgaattc 19059002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 20762331 - 20762378
Alignment:
Q  179 gggttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    ||||||||||| ||||||| ||||||||||| |||| |||||||||||    
T  20762331 gggttcgaaccctggacaccccacttattcaccttataaggtgaattc 20762378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 26671646 - 26671701
Alignment:
Q  193 gacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttga 248  Q
    ||||| ||||||||||||||||||||||||||| |||||  || ||| ||||||||    
T  26671646 gacaccccacttattcatcttaaaaggtgaatttctctagccactagactacttga 26671701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 26943243 - 26943298
Alignment:
Q  193 gacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttga 248  Q
    ||||| ||||||||||||||||||||||||||| |||||  || ||| ||||||||    
T  26943243 gacaccccacttattcatcttaaaaggtgaatttctctagccactagactacttga 26943298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 42208911 - 42209045
Alignment:
Q  124 ttcccataagtttagctcatttgataagggataatgtataatttatgtaggggctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaa 223  Q
    ||||||| || |||||||||||  |||||||||||  | ||| | || |||| |  |||||||||   ||||||  |||||||||||||| || ||||||    
T  42208911 ttcccatgagcttagctcatttagtaagggataatacacaatatgtgcagggccgaggttcgaactccggacacctcacttattcatctttaa-ggtgaa 42209009  T
Q  224 ttcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    || ||||| ||| ||||||||||||| |||| ||||    
T  42209010 tttctctagtcactaggctacttgacaaaaaaaaaa 42209045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 479 - 533
Target Start/End: Complemental strand, 6642351 - 6642297
Alignment:
Q  479 ctaatcagagaagcatgaggatgatgaggttggacatccgacatgattaaatcaa 533  Q
    ||||||| || || || ||||| |||||||||||||||| |||||||||||||||    
T  6642351 ctaatcacaggagaataaggataatgaggttggacatccaacatgattaaatcaa 6642297  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 31154339 - 31154281
Alignment:
Q  132 agtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaacc 189  Q
    ||||||||||| ||||||| |||||||  |||||||||| |||||||||| ||||||||    
T  31154339 agtttagctcacttgataacggataatacataatttatgaaggggctgggattcgaacc 31154281  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 15680943 - 15680867
Alignment:
Q  182 ttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    ||||||||| |||||| ||||||||||| ||| || |||||||| |||||| |  ||||||||||||| |||| ||||    
T  15680943 ttcgaacctcggacaccccacttattcacctttaa-ggtgaatttctctaaccgctaggctacttgacaaaaaaaaaa 15680867  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 15696209 - 15696254
Alignment:
Q  132 agtttagctcatttgataagggataatgtataatttatgtaggggc 177  Q
    |||||||||||||||||||||||||||| | ||| | |||||||||    
T  15696209 agtttagctcatttgataagggataatgcacaatatgtgtaggggc 15696254  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 33545477 - 33545358
Alignment:
Q  134 tttagctcatttgataagggataatgtataatttatgtaggggctgg-gttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctctaa 232  Q
    ||||||||||||| || ||||||||| | ||| | || |||||  || ||| |||||| |||||| || |||||||||||| || |||||||| |||||     
T  33545477 tttagctcatttgctatgggataatgcacaatatgtgcaggggtcggagtttgaacctcggacacccc-cttattcatctttaa-ggtgaatttctctag 33545380  T
Q  233 tcattaggctacttgaccaaaa 254  Q
     || ||||||||||||||||||    
T  33545379 ccactaggctacttgaccaaaa 33545358  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 419708 - 419841
Alignment:
Q  126 cccataagtttagctcatttgataagggataatgtataatttatgtaggggctggg-ttcgaaccttggacacaccacttattcatcttaaaaggtgaat 224  Q
    ||||| || |||||||||||| |||||||||||| | ||| | || |||||| ||| ||||||||  |||||| |||||||||||||||  |||||||||    
T  419708 cccatgagcttagctcatttggtaagggataatgaacaatatgtgcaggggccggggttcgaaccccggacaccccacttattcatctt-taaggtgaat 419806  T
Q  225 tcctctaatcattaggctacttgaccaaaacaaaa 259  Q
    | |||||  || ||||||||||||| |||| ||||    
T  419807 ttctctagccactaggctacttgacaaaaaaaaaa 419841  T

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Target: scaffold0204 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 10581 - 10676
Alignment:
Q  135 ttagctcatttgataagggataatgtataatttatgtaggggctgggttcgaaccttggacacaccacttattcatcttaaaaggtgaattcctcta 231  Q
    ||||||||||||||||||||||||| | |||  |||||||||| | |||||||| |  |||||  ||||||| |||||| ||| ||||||| |||||    
T  10581 ttagctcatttgataagggataatgcacaataaatgtaggggcggagttcgaacttcagacacctcacttatccatctttaaa-gtgaatttctcta 10676  T

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Target: scaffold0126 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 22907 - 22857
Alignment:
Q  167 tatgtaggggctgggttcgaaccttggacacaccacttattcatcttaaaa 217  Q
    |||| |||||| ||||||||||| ||||||| ||||||||||| |||||||    
T  22907 tatgcaggggccgggttcgaaccctggacaccccacttattcaccttaaaa 22857  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 166648 - 166693
Alignment:
Q  181 gttcgaaccttggacacaccacttattcatcttaaaaggtgaattc 226  Q
    |||||||||  |||||| |||||||||||||||| |||||||||||    
T  166648 gttcgaaccccggacactccacttattcatcttataaggtgaattc 166693  T

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