View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_high_33 (Length: 283)
Name: NF6365_high_33
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 263
Target Start/End: Complemental strand, 38110992 - 38110750
Alignment:
| Q |
21 |
gaaaatttgttcccgttattccacgatatttttacatcatagttggaattttcgtttaataatatttgcatatgtatgtagggattagattttgtgatat |
120 |
Q |
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| T |
38110992 |
gaaaatttgttcccgttattccacgatatttttacatcatagttggaattttcgtttaataatatttgcatatgtatgtagggattagattttgtgatat |
38110893 |
T |
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| Q |
121 |
cagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacg |
220 |
Q |
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| T |
38110892 |
cagagtcaaaaaaatacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaatatgtacaatgggcaagagaacg |
38110793 |
T |
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| Q |
221 |
tggtcaacatgtcaaaagcgacgatgacttctttacacatccc |
263 |
Q |
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| T |
38110792 |
tggtcaacatgtcaaaagcgacgatgacttctttacacatccc |
38110750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 38142498 - 38142324
Alignment:
| Q |
81 |
aatatttgcatatgtatgtagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctt |
180 |
Q |
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| T |
38142498 |
aatatttgcatgtgtacgtagggattggattttgtgatatcagaggcaaacaaatatggagtgaaacttatactgagcttagtgaataattggaatgatt |
38142399 |
T |
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| Q |
181 |
tgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttcttta |
255 |
Q |
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| T |
38142398 |
ttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttcttta |
38142324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 38155844 - 38155670
Alignment:
| Q |
81 |
aatatttgcatatgtatgtagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctt |
180 |
Q |
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| T |
38155844 |
aatacttgcatgtgtatgtagggtttggattttgtgatatcagaggcaagaaaatatggagtgaaacttatactgagcttagtgaataattggaatgatt |
38155745 |
T |
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| Q |
181 |
tgggaggaaaacataaatatgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttcttta |
255 |
Q |
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| T |
38155744 |
ttggaggcaaaaagaaatatgtgcagtgggcaagagaacgtggtcaaaatgtcaaaattgaagatgacttcttta |
38155670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 99 - 259
Target Start/End: Complemental strand, 38085815 - 38085655
Alignment:
| Q |
99 |
tagggattagattttgtgatatcagagtcnnnnnnntacggagtgcaacttatacttggcttggtgaataattggaatgctttgggaggaaaacataaat |
198 |
Q |
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| T |
38085815 |
taggcattggattttgtgatatcagaggcaagcaaatatggagtgaaacttatacttagcttggtgaataattggaatgattttggaggcaagaacaaat |
38085716 |
T |
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| Q |
199 |
atgtacaatgggcaagagaacgtggtcaacatgtcaaaagcgacgatgacttctttacaca |
259 |
Q |
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| T |
38085715 |
atgtgcagtgggcaaaagaacgtggtcaaaatatcaaaaacgatgatgacttctttacaca |
38085655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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