View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_high_37 (Length: 268)
Name: NF6365_high_37
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 8726024 - 8726263
Alignment:
| Q |
21 |
aaatctcataaactctataaaccttaagcttgcatagttttctggtttaactgtttctgcacaagttggagtcttttctatcataattgagtcacttgaa |
120 |
Q |
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| T |
8726024 |
aaatctcataaactctagaaaccctaagcttgcacagttttctggtttaactgtttctgcacaagttggagtcttttctatcataattgagtcacttgaa |
8726123 |
T |
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| Q |
121 |
ccatctttagtaactgggtctgagttggagtcttttctttgggctttgctcataacaatgccgccctaatcgaaatcaaccttgtccttaagattgaagg |
220 |
Q |
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| T |
8726124 |
ccatctttagtaactgggtctgagttggagtcttttctttgggctttgctcataacaatgccgccctaatcgaaatcaaccttgtccttaagattgaagg |
8726223 |
T |
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| Q |
221 |
tgttgcataagtctgaccaattctcccaagaagtataatc |
260 |
Q |
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| T |
8726224 |
tgttgcataagtctgaccaattctcccaagaagtataatc |
8726263 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 26884323 - 26884265
Alignment:
| Q |
29 |
taaactctataaaccttaagcttgcatagttttctggtttaactgtttctgcacaagtt |
87 |
Q |
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||||| ||| |||||||||||||||| ||||||||| || |||||||| |||||||||| |
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| T |
26884323 |
taaaccctagaaaccttaagcttgcacagttttctgtttcaactgtttttgcacaagtt |
26884265 |
T |
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