View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_high_46 (Length: 210)
Name: NF6365_high_46
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_high_46 |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 1680368 - 1680577
Alignment:
| Q |
1 |
caacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1680368 |
caacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgcctcgcaacatcttccatcttcaataa |
1680467 |
T |
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| Q |
101 |
atcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680468 |
atcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccc |
1680567 |
T |
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| Q |
201 |
cacaatcctt |
210 |
Q |
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|||||||||| |
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| T |
1680568 |
cacaatcctt |
1680577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 2800360 - 2800151
Alignment:
| Q |
1 |
caacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2800360 |
caacattaggaaagcgattacaaaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgcctcgcaacatcttccatcttcaataa |
2800261 |
T |
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| Q |
101 |
atcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccc |
200 |
Q |
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| T |
2800260 |
atcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccc |
2800161 |
T |
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| Q |
201 |
cacaatcctt |
210 |
Q |
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|||||||||| |
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| T |
2800160 |
cacaatcctt |
2800151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 49 - 210
Target Start/End: Complemental strand, 40469833 - 40469672
Alignment:
| Q |
49 |
aatttggcatgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttctt |
148 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||||||||||||||| | |
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| T |
40469833 |
aatttggcatgtttaacaattcacgcctcgcaacatcttccatctccaataaatcaaagatggcttctatactcgtccatgagttctcctcgcatttcct |
40469734 |
T |
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| Q |
149 |
agccaaatcctttgtgaaatgaggaagttgtagcagcatagagtcacgtccccacaatcctt |
210 |
Q |
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| T |
40469733 |
acccaaatcttttgtgaagtgaggaagtcgtagctgcatagagtcgcatccccacaatcctt |
40469672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 56 - 190
Target Start/End: Complemental strand, 29269481 - 29269347
Alignment:
| Q |
56 |
catgtttaacaattcacgccttgcaacatcttccatcttcaataaatcaaagatggtttctatactcttccctgggttctcctcgcatttcttagccaaa |
155 |
Q |
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|||||| |||||||| || || || |||||||||||| ||||||||||| | |||||||||||| ||||||||||||||| |||||||||||| ||| |
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| T |
29269481 |
catgttcaacaattcccgtctctcatcatcttccatctctaataaatcaaataccgtttctatactcctccctgggttctcctggcatttcttagctaaa |
29269382 |
T |
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| Q |
156 |
tcctttgtgaaatgaggaagttgtagcagcataga |
190 |
Q |
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||||||||||| || ||||| |||||||||||||| |
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| T |
29269381 |
tcctttgtgaagtgtggaagctgtagcagcataga |
29269347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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