View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_high_5 (Length: 603)
Name: NF6365_high_5
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 21 - 590
Target Start/End: Complemental strand, 3247832 - 3247269
Alignment:
| Q |
21 |
acttgaatgagatggttcgggtcttttctagtttaactagacgtcacgggtttcaatccaatccggagaatgcaggagatttaaaactcttgtgggagtg |
120 |
Q |
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| T |
3247832 |
acttgaatgagatggttcgggtcttttctagtttaactagacgtcacgggtttcaatccaatccggagaatgcaggagatttaaaactcttgtgggag-- |
3247735 |
T |
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| Q |
121 |
agagagcttttgctggccattgtggtcctacatggctcgatagattaatttctgcagttgcgtgcggaggatatccggtttacgtcaaacagctaaagtt |
220 |
Q |
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| T |
3247734 |
----agcttttgctggccattgtggtcctacatggctcgatagattagtttctgcagttgtgtgtggaggatatccgatttacgtcaaacagctaaagtt |
3247639 |
T |
|
| Q |
221 |
acattatggaaatgcagcatacaacaacaactaaatagatactacaatcaataaaaacacctctaattgcttggtatacaaccaaacctctctccaaaag |
320 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3247638 |
acatgatggaaatgcagcatacaacaacaactaaataaatactacaatcaataaaaacacctttaattgcttggtatacaaccaaacctctctccaaaag |
3247539 |
T |
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| Q |
321 |
tttcactgcatcattccaactgcgtccatcttcagcagcttcaaccatttctcctttattttcttccaaaactcgagccttttcgctgtaaatgcgagca |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3247538 |
tttcactgcatcattccaactgcgtccatcttcagcagcttcaaccatttctcctttattttcttccaaaactcgagccttttcgctgtatatgcgagca |
3247439 |
T |
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| Q |
421 |
atgacaatcgtgacatcagttaccaagacaatgtaaagaggccttgaagccaaaatactctttgaggagattaagtaatagaaaacaaccagcaatgcta |
520 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3247438 |
atgacaatcgtgacatcggttaccaagacaatgtaaagaggccttgaagccaaaatactctttgaggagattaagtaatagaaaacaaccagcaatgcta |
3247339 |
T |
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| Q |
521 |
ttatcagtgaacttagtgcacgtgtgttttcggaagttaaaatgcagaagttcagctctcttgatgagaa |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3247338 |
ttatcagtgaacttagtgcacgtgtgttttcggaagttaaaatgcagaagttcagctctcttgatgagaa |
3247269 |
T |
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