View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_high_6 (Length: 582)
Name: NF6365_high_6
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Complemental strand, 39813421 - 39812871
Alignment:
| Q |
17 |
aaatgcaatgtgcgttactagacttcaaatcttcctcaagaggactagttgctattccattagtctcttcaccattagaggcattcataagtttacaaat |
116 |
Q |
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| T |
39813421 |
aaatgcaatgtgcgttactagacttcaaatcttcctcaagaggactagttgctattccattagtctcttcaccattagaggcattcataagtttacaaat |
39813322 |
T |
|
| Q |
117 |
tgtattctttagaccttcaacgccccaacgataatctatatgtactgcataatcttgatcaggcaaaagcttcccatcttctgtgtgaacaccagggtaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813321 |
tgtattctttagaccttcaacgccccaacgataatctatatgtactgcataatcttgatcaggcaaaagcttcccatcttctgtgtgaacaccagggtaa |
39813222 |
T |
|
| Q |
217 |
taaacttcactcccactgctacaaactatagcatcaaattcagtcacttgaacatttcctgaggctagaaattccgttgtttcttgcattgtcatagcgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813221 |
taaacttcactcccactgctacaaactatagcatcaaattcagtcacttgaacatttcctgaggctagaaattccgttgtttcttgcattgtcatagcgg |
39813122 |
T |
|
| Q |
317 |
tcagcaaagcgaatcccgaaactcttgcagtttgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttatcaggatctcc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813121 |
tcagcaaagcgaatcccgaaactcttgcagtttgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttatcaggatctcc |
39813022 |
T |
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| Q |
417 |
attactggcataggaatcaagtgctataacaatcaacctgcgccttcgccttaatagagggtatttgtttgatacattatcaagcaacatgttctcatga |
516 |
Q |
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| T |
39813021 |
attactgtcataggaatcaagtgctataacaatcaacctgcgccttcgccttaatagagggtatttgtttgatacattatcaagcaacatgttctcatga |
39812922 |
T |
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| Q |
517 |
tttgaaccagaatcttgcttccttatcttgcttaagacacgtttcacttgg |
567 |
Q |
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| T |
39812921 |
tttgaaccagaatcttgcttccttatcttgcttaagacacgtttcacttgg |
39812871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 112 - 482
Target Start/End: Complemental strand, 15801311 - 15800941
Alignment:
| Q |
112 |
caaattgtattctttagaccttcaacgccccaacgataatctatatgtactgcataatcttgatcaggcaaaagcttcccatcttctgtgtgaacaccag |
211 |
Q |
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||||| || ||||||||||||||| |||||||||||| || ||||| | |||||||| ||||||| | ||| || |||||||| || | | ||| | |
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| T |
15801311 |
caaatggttttctttagaccttcacagccccaacgatagtcgatatgcgcctcataatctggatcaggaacaagttttccatcttcggtataagtaccgg |
15801212 |
T |
|
| Q |
212 |
ggtaataaacttcactcccactgctacaaactatagcatcaaattcagtcacttgaacatttcctgaggctagaaattccgttgtttcttgcattgtcat |
311 |
Q |
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| T |
15801211 |
gatagtaaagttcactcccactactgcaaatcaaagcatcaaaatcatttacttgaatttttccagatttaaggaattctattgtttgtagtatcggcat |
15801112 |
T |
|
| Q |
312 |
agcggtcagcaaagcgaatcccgaaactcttgcagtttgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttatcagga |
411 |
Q |
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||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||| | |||| |||||||||||| |
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| T |
15801111 |
agctgtcgataaagcaaatcccgaaactcttgcagtttgagggtctagttgaacagctttaatgattctttgaattatttggatcatattcttatcagga |
15801012 |
T |
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| Q |
412 |
tctccattactggcataggaatcaagtgctataacaatcaacctgcgccttcgccttaatagagggtattt |
482 |
Q |
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|||||||| | || |||||| ||||||||||||||||| |||| || ||| |||||||| ||||| |
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| T |
15801011 |
gctccattatcatcgtacaaatcaaccgctataacaatcaacctccgccgtctcctcaatagaggatattt |
15800941 |
T |
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