View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6365_high_8 (Length: 532)

Name: NF6365_high_8
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6365_high_8
NF6365_high_8
[»] chr7 (11 HSPs)
chr7 (227-407)||(30859752-30859933)
chr7 (99-224)||(30859752-30859878)
chr7 (230-310)||(16488152-16488232)
chr7 (322-408)||(13798496-13798582)
chr7 (117-183)||(13798516-13798582)
chr7 (322-408)||(31877359-31877444)
chr7 (256-302)||(42629201-42629247)
chr7 (227-266)||(23284776-23284815)
chr7 (227-273)||(38458269-38458315)
chr7 (227-279)||(31877954-31878006)
chr7 (229-273)||(34328637-34328681)
[»] chr6 (6 HSPs)
chr6 (227-304)||(32879698-32879775)
chr6 (227-301)||(26622234-26622308)
chr6 (227-301)||(26728212-26728286)
chr6 (255-302)||(31778837-31778884)
chr6 (256-302)||(1860386-1860432)
chr6 (227-272)||(2146783-2146827)
[»] chr5 (16 HSPs)
chr5 (227-304)||(25994552-25994629)
chr5 (227-311)||(14410737-14410821)
chr5 (227-312)||(17854695-17854780)
chr5 (227-304)||(25994914-25994991)
chr5 (227-304)||(26092579-26092656)
chr5 (256-305)||(32804888-32804937)
chr5 (256-311)||(14410237-14410292)
chr5 (256-303)||(25868504-25868551)
chr5 (227-273)||(20419544-20419590)
chr5 (121-183)||(26092490-26092552)
chr5 (229-310)||(25868108-25868189)
chr5 (231-304)||(26093012-26093085)
chr5 (257-302)||(7732848-7732893)
chr5 (227-268)||(32303662-32303702)
chr5 (224-268)||(26654350-26654394)
chr5 (224-268)||(26925935-26925979)
[»] chr1 (17 HSPs)
chr1 (1-90)||(41655580-41655675)
chr1 (227-312)||(11434745-11434830)
chr1 (227-313)||(32713200-32713286)
chr1 (438-524)||(41655369-41655449)
chr1 (227-304)||(7013655-7013732)
chr1 (224-268)||(19062891-19062935)
chr1 (227-266)||(32306413-32306452)
chr1 (117-172)||(45886883-45886938)
chr1 (227-273)||(33296570-33296616)
chr1 (231-268)||(7013261-7013298)
chr1 (227-268)||(21258321-21258362)
chr1 (118-183)||(7013158-7013223)
chr1 (322-387)||(7013158-7013223)
chr1 (256-309)||(37920147-37920200)
chr1 (224-289)||(45797591-45797656)
chr1 (227-268)||(49000701-49000742)
chr1 (196-224)||(37919711-37919739)
[»] chr4 (26 HSPs)
chr4 (227-305)||(32304747-32304825)
chr4 (227-407)||(36153939-36154117)
chr4 (227-303)||(53260184-53260260)
chr4 (227-304)||(32303914-32303991)
chr4 (227-311)||(19487518-19487602)
chr4 (244-305)||(11660950-11661011)
chr4 (255-310)||(40361676-40361731)
chr4 (97-183)||(36154033-36154119)
chr4 (227-310)||(36153453-36153537)
chr4 (256-310)||(40277091-40277145)
chr4 (131-183)||(14331678-14331730)
chr4 (361-404)||(18886592-18886635)
chr4 (322-401)||(20779920-20779999)
chr4 (97-183)||(42040390-42040476)
chr4 (227-266)||(46844626-46844665)
chr4 (227-273)||(5314391-5314437)
chr4 (229-303)||(11661015-11661089)
chr4 (117-183)||(20779920-20779986)
chr4 (227-273)||(21283878-21283924)
chr4 (227-273)||(23811343-23811389)
chr4 (224-261)||(10011626-10011663)
chr4 (224-261)||(10018767-10018804)
chr4 (194-223)||(19487518-19487547)
chr4 (118-183)||(32303821-32303886)
chr4 (99-183)||(36153358-36153443)
chr4 (131-183)||(31825843-31825895)
[»] chr3 (8 HSPs)
chr3 (227-303)||(16280916-16280992)
chr3 (114-172)||(7953376-7953434)
chr3 (227-266)||(22754766-22754805)
chr3 (105-171)||(49304090-49304157)
chr3 (227-266)||(51171088-51171127)
chr3 (227-272)||(18360109-18360153)
chr3 (335-387)||(7953380-7953432)
chr3 (254-302)||(53831357-53831405)
[»] scaffold0012 (1 HSPs)
scaffold0012 (223-304)||(36150-36231)
[»] chr2 (13 HSPs)
chr2 (244-303)||(33710901-33710960)
chr2 (227-312)||(3816281-3816366)
chr2 (255-304)||(26129434-26129483)
chr2 (256-302)||(19004816-19004862)
chr2 (131-224)||(42882488-42882579)
chr2 (256-304)||(42807473-42807521)
chr2 (223-266)||(11805021-11805064)
chr2 (227-266)||(24582538-24582577)
chr2 (322-413)||(37058121-37058212)
chr2 (231-268)||(24582477-24582514)
chr2 (131-172)||(29110347-29110388)
chr2 (275-312)||(42882548-42882585)
chr2 (227-267)||(27334517-27334557)
[»] chr8 (16 HSPs)
chr8 (227-312)||(7130130-7130215)
chr8 (224-310)||(39872150-39872236)
chr8 (195-268)||(13461190-13461271)
chr8 (231-303)||(45156344-45156416)
chr8 (240-303)||(1797748-1797811)
chr8 (256-310)||(13461190-13461244)
chr8 (227-292)||(15892151-15892216)
chr8 (253-309)||(45156018-45156074)
chr8 (227-310)||(42432014-42432097)
chr8 (256-310)||(7130616-7130670)
chr8 (462-524)||(28812776-28812838)
chr8 (117-183)||(42183570-42183636)
chr8 (221-250)||(32077009-32077038)
chr8 (263-295)||(5345348-5345380)
chr8 (224-268)||(18839008-18839052)
chr8 (225-289)||(24190907-24190971)
[»] scaffold0027 (2 HSPs)
scaffold0027 (235-304)||(49226-49295)
scaffold0027 (322-401)||(49121-49200)
[»] scaffold1107 (1 HSPs)
scaffold1107 (255-311)||(1920-1976)
[»] scaffold0254 (1 HSPs)
scaffold0254 (227-272)||(23244-23288)
[»] scaffold0007 (1 HSPs)
scaffold0007 (257-294)||(232390-232427)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 227 - 407
Target Start/End: Complemental strand, 30859933 - 30859752
Alignment:
Q  227 tgagttaactcacgcatgtgttaattt-cagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtcaaannnnnnnnacac 325  Q
    |||||||||||| ||| |||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||| ||||||           ||||    
T  30859933 tgagttaactcatgcaggtgttaattttcggtgtgagttaactcacgcggcgtgacttaagtcatgcatgtgtaaaaactaagtcccgttttttttacac 30859834  T
Q  326 ttgcgttaattaattagcacatgggcattttcggaatggctgtaggacgcaagtgttttgtggagggggaagagcaaaaatc 407  Q
    |||||||| |||| | || || ||||||||| |||||||||| ||| ||| ||||||||||| ||||||||||||| |||||    
T  30859833 ttgcgttagttaacttgcgcaggggcatttttggaatggctgcagggcgcgagtgttttgtgcagggggaagagcagaaatc 30859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 30859752 - 30859878
Alignment:
Q  99 gatttatgctcttccct-tgcacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgtnnnnnnnncttgac 197  Q
    ||||| ||||||||||  |||||||||||||  ||||||||||||||| | |||||| |||||||| |||||||| ||||||||||        |  |||    
T  30859752 gatttctgctcttccccctgcacaaaacactcgcgccctgcagccattccaaaaatgcccctgcgcaagttaactaacgcaagtgtaaaaaaaacgggac 30859851  T
Q  198 ttagtttttacacatgcgtgacttaag 224  Q
    ||||||||||||||||| |||||||||    
T  30859852 ttagtttttacacatgcatgacttaag 30859878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 16488152 - 16488232
Alignment:
Q  230 gttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtc 310  Q
    |||||||||||||||||||||   | |||||| |||||| | || |||||||||||||||  |||||||||||| ||||||    
T  16488152 gttaactcacgcatgtgttaacacctgcgtgaattaactcatgcagcgtgacttaagtcacacatgtgtaaaaactaagtc 16488232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 13798582 - 13798496
Alignment:
Q  322 acacttgcgttaattaattagcacatgggcattttcggaatggctgtaggacgcaagtgttttgtggagggggaagagcaaaaatca 408  Q
    |||||||||||| |||| |||| ||  | |||||| |||||||||| ||| ||| |||||||||||  |||||||||||| ||||||    
T  13798582 acacttgcgttacttaactagcgcagagacattttgggaatggctgcagggcgcgagtgttttgtgctgggggaagagcagaaatca 13798496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 13798516 - 13798582
Alignment:
Q  117 gcacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    ||||||||||||  ||||||||||||||| | |||||| | ||||||||||||| | ||||||||||    
T  13798516 gcacaaaacactcgcgccctgcagccattcccaaaatgtctctgcgctagttaagtaacgcaagtgt 13798582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 31877444 - 31877359
Alignment:
Q  322 acacttgcgttaattaattagcacatgggcattttcggaatggctgtaggacgcaagtgttttgtggagggggaagagcaaaaatca 408  Q
    |||||||||||| ||||||| |||| || |||||| || || |||||||||||| |||||||||||  ||||| |||||| ||||||    
T  31877444 acacttgcgttagttaattaacacagggacatttttggcatagctgtaggacgcgagtgttttgtgctggggg-agagcagaaatca 31877359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 42629201 - 42629247
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaa 302  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||    
T  42629201 gcgtgagttaactcatgcagcgtgacttaagtcatgcatgtgtaaaa 42629247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 23284776 - 23284815
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaa 266  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  23284776 tgagttaactcacgcaggtgttaattccagcgtgagttaa 23284815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 38458269 - 38458315
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgc 273  Q
    |||||||||||||||||||| |||| || ||||||||||||| ||||    
T  38458269 tgagttaactcacgcatgtgctaatgtctgcgtgagttaactcacgc 38458315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 31877954 - 31878006
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtg 279  Q
    ||||||||||||||||||||||||   | ||||||||||||| | ||||||||    
T  31877954 tgagttaactcacgcatgtgttaacacctgcgtgagttaactcatgcggcgtg 31878006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 273
Target Start/End: Complemental strand, 34328681 - 34328637
Alignment:
Q  229 agttaactcacgcatgtgttaatttcagcgtgagttaacttacgc 273  Q
    ||||||||||| || ||||||||| ||||||||||||||| ||||    
T  34328681 agttaactcacacaagtgttaattccagcgtgagttaactcacgc 34328637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 32879775 - 32879698
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| ||||||||||    
T  32879775 tgagttaactcacgcatgtgttaatttcagcgtgagttaactcacgcagcgtgacttaagtcacgcaagtgtaaaaaa 32879698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 26622234 - 26622308
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaa 301  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||| || ||| ||| ||||  ||||||||||    
T  26622234 tgagttaactcacgcaggtgttaatttcagcgcgagttaacttacgcagcatgatttatgtcacacatgtgtaaa 26622308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 301
Target Start/End: Original strand, 26728212 - 26728286
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaa 301  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||| || ||| ||| ||||  ||||||||||    
T  26728212 tgagttaactcacgcaggtgttaatttcagcgcgagttaacttacgcagcatgatttatgtcacacatgtgtaaa 26728286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 302
Target Start/End: Complemental strand, 31778884 - 31778837
Alignment:
Q  255 agcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaa 302  Q
    |||||||||||||| | |||||||||||||||||| ||||||||||||    
T  31778884 agcgtgagttaactcatgcggcgtgacttaagtcacgcatgtgtaaaa 31778837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 1860432 - 1860386
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaa 302  Q
    ||||||||||||||| |  ||||||||||||||| ||||||||||||    
T  1860432 gcgtgagttaacttatgttgcgtgacttaagtcacgcatgtgtaaaa 1860386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 2146783 - 2146827
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacg 272  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  2146783 tgagtgaactcacgcatgtgt-aatttcaacgtgagttaacttacg 2146827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 25994629 - 25994552
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    |||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  25994629 tgagttaactcacgcaggtgttaatttctgcgtgagttaactcaggcggcgtgacttaagtcacgcatgtgtaaaaaa 25994552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 14410737 - 14410821
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtca 311  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||||||  |||||||||||| |||||||    
T  14410737 tgagttaactcacgcacgtgttaatttcagcatgagttaactcacgcagcgtgacttaagtcacacatgtgtaaaaactaagtca 14410821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 17854695 - 17854780
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtcaa 312  Q
    ||||||||||||| || ||||||||||||||||||||||||| |||| | ||||| ||||||| ||||||||||||| ||| ||||    
T  17854695 tgagttaactcacacaagtgttaatttcagcgtgagttaactcacgcagtgtgacctaagtcacgcatgtgtaaaaactaactcaa 17854780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 25994914 - 25994991
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    |||||||||||||||| |||||||||   ||||||||||||| | || ||||||||||||||| ||||||||||||||    
T  25994914 tgagttaactcacgcaagtgttaattctcgcgtgagttaactcatgcagcgtgacttaagtcacgcatgtgtaaaaaa 25994991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 26092656 - 26092579
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    ||||||||||| |||| ||||||||||| ||||||||||||| | ||| | |||||||||||| ||| ||||||||||    
T  26092656 tgagttaactctcgcaggtgttaatttctgcgtgagttaactcatgcgacatgacttaagtcacgcaagtgtaaaaaa 26092579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 32804888 - 32804937
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaat 305  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  32804888 gcgtgagttaactcacgcggcgtgacttaagtcacacatgtgtaaaaaat 32804937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 14410292 - 14410237
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtca 311  Q
    ||||||||||||| |||| ||||||||||||||| |||||| |||||| |||||||    
T  14410292 gcgtgagttaactcacgcagcgtgacttaagtcacgcatgtataaaaactaagtca 14410237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 25868504 - 25868551
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaa 303  Q
    ||||||||||||||| || ||||||||||||||| |||||||||||||    
T  25868504 gcgtgagttaacttatgcagcgtgacttaagtcacgcatgtgtaaaaa 25868551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 20419590 - 20419544
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgc 273  Q
    |||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  20419590 tgagttaactcacgcaagtgttaattccagcgtgagttaactcacgc 20419544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 26092490 - 26092552
Alignment:
Q  121 aaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    ||||||||  |||||||||| ||||||||||||  || |||||||||||||| ||||||||||    
T  26092490 aaaacactcgcgccctgcaggcatttcgaaaatacccttgcgctagttaactaacgcaagtgt 26092552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 25868189 - 25868108
Alignment:
Q  229 agttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtc 310  Q
    |||||||||||||| |||||||     ||||||||||||| | || |||||||||||||||  |||||||||||| ||||||    
T  25868189 agttaactcacgcacgtgttaacacatgcgtgagttaactcatgcagcgtgacttaagtcacacatgtgtaaaaactaagtc 25868108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 26093012 - 26093085
Alignment:
Q  231 ttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    |||||||||||| ||||||||| | |||| |||||| | |  |||||||||||||||||  |||||||||||||    
T  26093012 ttaactcacgcacgtgttaattcctgcgtaagttaattcatacggcgtgacttaagtcacacatgtgtaaaaaa 26093085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 7732848 - 7732893
Alignment:
Q  257 cgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaa 302  Q
    |||||||||||| | | |||||||||||||||| ||||||||||||    
T  7732848 cgtgagttaactcatgtggcgtgacttaagtcacgcatgtgtaaaa 7732893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 32303662 - 32303702
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaact 268  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  32303662 tgagttaactcacgcatgtg-tattttcagcgtgagttaact 32303702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 26654350 - 26654394
Alignment:
Q  224 gcatgagttaactcacgcatgtgttaatttcagcgtgagttaact 268  Q
    |||||||||||||||| |||||||||||  | |||||||||||||    
T  26654350 gcatgagttaactcacacatgtgttaatggctgcgtgagttaact 26654394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 26925935 - 26925979
Alignment:
Q  224 gcatgagttaactcacgcatgtgttaatttcagcgtgagttaact 268  Q
    |||||||||||||||| |||||||||||  | |||||||||||||    
T  26925935 gcatgagttaactcacacatgtgttaatggctgcgtgagttaact 26925979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 41655675 - 41655580
Alignment:
Q  1 aagacaagtgaaaactaggggcaggga------ccctcttaaaaatctaataaaagcagacatatcattgttcttaattaatcaagatacaccaaa 90  Q
    ||||||||||||||||| |||||||||      |||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||    
T  41655675 aagacaagtgaaaactaagggcagggaggataaccctcttaaaaatctaataaaagcaggcatatcattgttcctaattaattaagatacaccaaa 41655580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 11434830 - 11434745
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtcaa 312  Q
    |||| ||||||| ||||||||||||| ||||||||||||||| |||| | ||||||||||||| ||||||||||||| ||||||||    
T  11434830 tgagctaactcaggcatgtgttaattccagcgtgagttaactcacgcagtgtgacttaagtcaggcatgtgtaaaaactaagtcaa 11434745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 32713286 - 32713200
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtcaaa 313  Q
    |||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||| | |||||| |||| ||| |||||    
T  32713286 tgagttaactcacgcaagtgttaattttagcgtgagttaactcacgcagcgtgacttaagtcacgtatgtgttaaaactaaatcaaa 32713200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 438 - 524
Target Start/End: Complemental strand, 41655449 - 41655369
Alignment:
Q  438 catgcacaattgtacctgtggtaatggtatgtgcaaataaatgtagttatttgcagcagttgaattgtgattttctgcacctttgct 524  Q
    |||||||||||||||||||||||      ||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||    
T  41655449 catgcacaattgtacctgtggta------tgtgcaaataaatgtagttctttgcagtagttggattgtgagtttctgcacctttgct 41655369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 7013655 - 7013732
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    |||||||| ||||||| ||||||||| |  |||||||||||||| ||| ||||| |||||| | ||||||||||||||    
T  7013655 tgagttaattcacgcaggtgttaattcctacgtgagttaacttatgcgacgtgatttaagttacgcatgtgtaaaaaa 7013732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 19062891 - 19062935
Alignment:
Q  224 gcatgagttaactcacgcatgtgttaatttcagcgtgagttaact 268  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||    
T  19062891 gcatgagttaattcacgcaagtgttaatttcagcgtgagttaact 19062935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 32306452 - 32306413
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaa 266  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  32306452 tgagttaactcacgcaagtgttaatttcagcgtgagttaa 32306413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 45886883 - 45886938
Alignment:
Q  117 gcacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaact 172  Q
    ||||||||||||  |||||||||| ||||||||||||  |||||||||||||||||    
T  45886883 gcacaaaacactcgcgccctgcagacatttcgaaaatacccctgcgctagttaact 45886938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 33296616 - 33296570
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgc 273  Q
    ||||||||||||||||||||||||| || ||||||||||||| ||||    
T  33296616 tgagttaactcacgcatgtgttaatgtctgcgtgagttaactaacgc 33296570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 7013298 - 7013261
Alignment:
Q  231 ttaactcacgcatgtgttaatttcagcgtgagttaact 268  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7013298 ttaactcacgcatgtgttaatttctgcgtgagttaact 7013261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 21258321 - 21258362
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaact 268  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  21258321 tgagttaactcacgcaagtgttaattccagcgtgagttaact 21258362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 7013158 - 7013223
Alignment:
Q  118 cacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    |||||||||||| | |||||||| |||| |||||||   | |||||||||||||| ||||||||||    
T  7013158 cacaaaacacttgcaccctgcaggcattccgaaaatactcatgcgctagttaactaacgcaagtgt 7013223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 7013223 - 7013158
Alignment:
Q  322 acacttgcgttaattaattagcacatgggcattttcggaatggctgtaggacgcaagtgttttgtg 387  Q
    |||||||||||| |||| |||| |||| | |||||||||||| ||| |||  ||||||||||||||    
T  7013223 acacttgcgttagttaactagcgcatgagtattttcggaatgcctgcagggtgcaagtgttttgtg 7013158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 37920147 - 37920200
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagt 309  Q
    ||||||||||||| |||  |||||| |||||||| ||||||||||||| |||||    
T  37920147 gcgtgagttaactcacgttgcgtgatttaagtcacgcatgtgtaaaaactaagt 37920200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 45797591 - 45797656
Alignment:
Q  224 gcatgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtca 289  Q
    ||||||||||| ||||| |||||||||  ||| ||||| |||||  |||| |||||||||||||||    
T  45797591 gcatgagttaagtcacgtatgtgttaaactcaacgtgacttaacacacgcagcgtgacttaagtca 45797656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 49000701 - 49000742
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaact 268  Q
    |||||||||||||||||||| |||| || |||||||||||||    
T  49000701 tgagttaactcacgcatgtgctaatgtctgcgtgagttaact 49000742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 37919711 - 37919739
Alignment:
Q  196 acttagtttttacacatgcgtgacttaag 224  Q
    |||||||||||||||||||||||||||||    
T  37919711 acttagtttttacacatgcgtgacttaag 37919739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 32304747 - 32304825
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaat 305  Q
    ||||||||||||| |||||||||||||||||||||||||||| || | || |||||||||||| |||||||||||||||    
T  32304747 tgagttaactcacacatgtgttaatttcagcgtgagttaactcacccagcatgacttaagtcacgcatgtgtaaaaaat 32304825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 407
Target Start/End: Original strand, 36153939 - 36154117
Alignment:
Q  227 tgagttaactcacgcatgtgttaattt-cagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtcaaannnnnnnnacac 325  Q
    |||||||||||||||| |||||||||| | |||||| |||||| ||||||||| |||||||||| ||||||||||||  |||||            ||||    
T  36153939 tgagttaactcacgcaggtgttaattttcggcgtgacttaactcacgcggcgtaacttaagtcacgcatgtgtaaaatctaagt--ttcgttttttacac 36154036  T
Q  326 ttgcgttaattaattagcacatgggcattttcggaatggctgtaggacgcaagtgttttgtggagggggaagagcaaaaatc 407  Q
    ||||||||| ||| |||| ||||||||||||||||||||||| |||  |||||||||||||  | ||||||||||| |||||    
T  36154037 ttgcgttaaataactagcgcatgggcattttcggaatggctgcagggtgcaagtgttttgtata-ggggaagagcagaaatc 36154117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 53260184 - 53260260
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaa 303  Q
    |||||| ||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||||| | |||||||||||    
T  53260184 tgagttgactcacgcatgtgttaatttcggcgtgggttaactcacgcagcgtgacttaagtcacgtatgtgtaaaaa 53260260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 32303991 - 32303914
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    ||||||||||||| |||||||||||| | ||||||||||||| | ||| |||||||||||||| | ||||||||||||    
T  32303991 tgagttaactcacacatgtgttaattcctgcgtgagttaactcatgcgacgtgacttaagtcacgtatgtgtaaaaaa 32303914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 311
Target Start/End: Complemental strand, 19487602 - 19487518
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtca 311  Q
    ||||||||||||||||  |||| |||| ||| |||||||||| |||| |||||| |||||||| ||||||||||||| |||||||    
T  19487602 tgagttaactcacgcagatgtttattttagcatgagttaactcacgcagcgtgagttaagtcacgcatgtgtaaaaactaagtca 19487518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 305
Target Start/End: Original strand, 11660950 - 11661011
Alignment:
Q  244 gtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaat 305  Q
    ||||||||||||||||||||||||| || | ||||||||||||||| ||| |||||||||||    
T  11660950 gtgttaatttcagcgtgagttaactcacacagcgtgacttaagtcacgcaagtgtaaaaaat 11661011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 40361676 - 40361731
Alignment:
Q  255 agcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtc 310  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||    
T  40361676 agcgtgagttaactcacgtggcgtgacttaagtcacgcatgtgtaaaaattaagtc 40361731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 36154119 - 36154033
Alignment:
Q  97 aagatttatgctcttcccttgcacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    ||||||| |||||||||| |  ||||||||||| | ||||||||||||| |||||||| || |||||||||||  | ||||||||||    
T  36154119 aagatttctgctcttcccctatacaaaacacttgcaccctgcagccattccgaaaatgcccatgcgctagttatttaacgcaagtgt 36154033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 36153537 - 36153453
Alignment:
Q  227 tgagttaactcacgcatgtgttaattt-cagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtc 310  Q
    |||||||||||| |||||||||||||| | |  |||||||||| | | | ||| |||||||||||||||||||||||| ||||||    
T  36153537 tgagttaactcatgcatgtgttaattttcggtatgagttaactcatgtgacgtaacttaagtcatgcatgtgtaaaaattaagtc 36153453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 40277091 - 40277145
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtc 310  Q
    |||||| |||||| ||||||||||||||||| ||| |||||||||||| ||||||    
T  40277091 gcgtgacttaactcacgcggcgtgacttaaggcattcatgtgtaaaaactaagtc 40277145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 14331730 - 14331678
Alignment:
Q  131 cgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    |||||||||  ||||||||||||| |||||||||||||||||  |||||||||    
T  14331730 cgccctgcaagcatttcgaaaatgcccctgcgctagttaactagcgcaagtgt 14331678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 404
Target Start/End: Complemental strand, 18886635 - 18886592
Alignment:
Q  361 atggctgtaggacgcaagtgttttgtggagggggaagagcaaaa 404  Q
    |||||||||||| || ||||||||||| ||||||||||||||||    
T  18886635 atggctgtaggatgcgagtgttttgtgcagggggaagagcaaaa 18886592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 401
Target Start/End: Original strand, 20779920 - 20779999
Alignment:
Q  322 acacttgcgttaattaattagcacatgggcattttcggaatggctgtaggacgcaagtgttttgtggagggggaagagca 401  Q
    ||||||||| || |||| |||| ||||||||||||| ||||| ||| ||| ||| |||||||||||  ||| ||||||||    
T  20779920 acacttgcgctagttaactagcgcatgggcattttcagaatgtctgcagggcgcgagtgttttgtgctgggtgaagagca 20779999  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 42040390 - 42040476
Alignment:
Q  97 aagatttatgctcttccct-tgcacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    ||||||||||||||||||| |||||||||||||  |||||||||| |||  | |||||  ||||||| ||||||||| ||||| ||||    
T  42040390 aagatttatgctcttccctctgcacaaaacactcgcgccctgcag-catgcctaaaatacccctgcgttagttaactaacgcacgtgt 42040476  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 46844626 - 46844665
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaa 266  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  46844626 tgagttaactcacgcaagtgttaatttcaacgtgagttaa 46844665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 5314437 - 5314391
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgc 273  Q
    |||||||||||||||| ||||||||| |||||||| |||||| ||||    
T  5314437 tgagttaactcacgcaagtgttaattccagcgtgaattaactcacgc 5314391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 11661089 - 11661015
Alignment:
Q  229 agttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaa 303  Q
    |||||||| ||||| |||| || ||  |||| | |||||| |||| ||||||||||||||||||| |||||||||    
T  11661089 agttaactaacgcaagtgtaaaattatgcgttacttaactaacgcagcgtgacttaagtcatgcacgtgtaaaaa 11661015  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 20779986 - 20779920
Alignment:
Q  117 gcacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    ||||||||||||  |||||||||| ||||  ||||||| || ||||||||||||||  |||||||||    
T  20779986 gcacaaaacactcgcgccctgcagacattctgaaaatgcccatgcgctagttaactagcgcaagtgt 20779920  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 21283924 - 21283878
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgc 273  Q
    |||||||||||||||||||| ||||  | ||||||||||||||||||    
T  21283924 tgagttaactcacgcatgtgctaatggctgcgtgagttaacttacgc 21283878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 23811389 - 23811343
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgc 273  Q
    |||| ||||||||||| ||||||||| ||||||||||||||| ||||    
T  23811389 tgagataactcacgcaagtgttaattccagcgtgagttaactcacgc 23811343  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 10011626 - 10011663
Alignment:
Q  224 gcatgagttaactcacgcatgtgttaatttcagcgtga 261  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  10011626 gcatgagttaactcacgcaagtgttgatttcagcgtga 10011663  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 10018767 - 10018804
Alignment:
Q  224 gcatgagttaactcacgcatgtgttaatttcagcgtga 261  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  10018767 gcatgagttaactcacgcaagtgttgatttcagcgtga 10018804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 19487518 - 19487547
Alignment:
Q  194 tgacttagtttttacacatgcgtgacttaa 223  Q
    ||||||||||||||||||||||||||||||    
T  19487518 tgacttagtttttacacatgcgtgacttaa 19487547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 32303821 - 32303886
Alignment:
Q  118 cacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    |||||||||||  |||||||||| |||| |||||||  |  |||||||||||||| ||||||||||    
T  32303821 cacaaaacactcgcgccctgcaggcattccgaaaataccattgcgctagttaactaacgcaagtgt 32303886  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 36153358 - 36153443
Alignment:
Q  99 gatttatgctcttcc-cttgcacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    ||||| ||||||||| | ||||||||| |||  |||||| || |||||| ||||||| | ||||||||||||| | ||||||||||    
T  36153358 gatttctgctcttcctcctgcacaaaatactcacgccctacatccattttgaaaatgtctctgcgctagttaagtaacgcaagtgt 36153443  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 31825895 - 31825843
Alignment:
Q  131 cgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    ||||||||||||||  | |||||| || ||||||||||||||| |||||||||    
T  31825895 cgccctgcagccatgccaaaaatgcccttgcgctagttaacttgcgcaagtgt 31825843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 16280916 - 16280992
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaa 303  Q
    ||||||||||||| || ||||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||    
T  16280916 tgagttaactcacccaagtgttaatttcggcgtgagttaactcacgcggcgtgacttaagtcacgcaagtgtaaaaa 16280992  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 7953376 - 7953434
Alignment:
Q  114 cttgcacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaact 172  Q
    |||||||||||||||  |||| |||||||||| |||||||| || ||||||||||||||    
T  7953376 cttgcacaaaacactcgcgccgtgcagccattccgaaaatgcccatgcgctagttaact 7953434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 22754805 - 22754766
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaa 266  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  22754805 tgagttaactcacgcaagtgttaattccagcgtgagttaa 22754766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 49304157 - 49304090
Alignment:
Q  105 tgctcttc-ccttgcacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaac 171  Q
    |||||||| ||| ||||||||||||| | |||||||||||| || |||||| || |||||||||||||    
T  49304157 tgctcttcacctagcacaaaacacttgcaccctgcagccatatccaaaatgcccatgcgctagttaac 49304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 51171127 - 51171088
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaa 266  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  51171127 tgagttaactcacgcacgtgttaatttcagcgtgacttaa 51171088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 18360153 - 18360109
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacg 272  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||    
T  18360153 tgagttaactcacgcaggtgt-attttcagcgtgagttaacttacg 18360109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 7953432 - 7953380
Alignment:
Q  335 ttaattagcacatgggcattttcggaatggctgtaggacgcaagtgttttgtg 387  Q
    |||| |||| ||||||||||||||||||||||| | | ||| |||||||||||    
T  7953432 ttaactagcgcatgggcattttcggaatggctgcacggcgcgagtgttttgtg 7953380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 53831357 - 53831405
Alignment:
Q  254 cagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaa 302  Q
    ||||||||||||||| | ||  ||||||||||||||||||||| |||||    
T  53831357 cagcgtgagttaactcatgcaacgtgacttaagtcatgcatgtataaaa 53831405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 304
Target Start/End: Original strand, 36150 - 36231
Alignment:
Q  223 agcatgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    |||||||||||||||||||| ||||||||| |||||||||||| || |||| ||||||||||||||| | | ||||||||||    
T  36150 agcatgagttaactcacgcacgtgttaattccagcgtgagttagctcacgcagcgtgacttaagtcacgtaagtgtaaaaaa 36231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 33710960 - 33710901
Alignment:
Q  244 gtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaa 303  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  33710960 gtgttaatttcagcgtgagttaactcacgcagcgtgacttaagtcacgcatgtgtaaaaa 33710901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 3816281 - 3816366
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtcaa 312  Q
    |||||||||| ||||| ||||||||| || |||||||||||| |||| |||||||||||||||  ||| |||||||| ||||||||    
T  3816281 tgagttaacttacgcaggtgttaattacaacgtgagttaactcacgcagcgtgacttaagtcacacatatgtaaaaattaagtcaa 3816366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 26129483 - 26129434
Alignment:
Q  255 agcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  26129483 agcgcgagttaacttatgcggcgtgacttaagtcatgcatgtgtaaaaaa 26129434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 19004862 - 19004816
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaa 302  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||    
T  19004862 gcgtgagttaactcatgcggcgtgacttaagtcacgcatgtgtaaaa 19004816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 42882488 - 42882579
Alignment:
Q  131 cgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgtnnnnnnnncttgacttagtttttacacatgcgtgacttaag 224  Q
    ||||||||||||||  | |||||  |||| |||||||||||| ||||||||||         ||||||||||||||||||||||||||||||||    
T  42882488 cgccctgcagccatgactaaaatacccctacgctagttaactaacgcaagtgtaaaaaaa--ttgacttagtttttacacatgcgtgacttaag 42882579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 42807521 - 42807473
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    ||||||||||||| | |||||||||||||||||| | ||||||||||||    
T  42807521 gcgtgagttaactcatgcggcgtgacttaagtcacgtatgtgtaaaaaa 42807473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 11805064 - 11805021
Alignment:
Q  223 agcatgagttaactcacgcatgtgttaatttcagcgtgagttaa 266  Q
    |||||||||||||||||||||||||||||  ||| |||||||||    
T  11805064 agcatgagttaactcacgcatgtgttaatcccagtgtgagttaa 11805021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 24582538 - 24582577
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaa 266  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  24582538 tgagttaactcacgcaagtgttaattacagcgtgagttaa 24582577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 413
Target Start/End: Original strand, 37058121 - 37058212
Alignment:
Q  322 acacttgcgttaattaattagcacatgggcattttcggaatggctgtaggacgcaagtgttttgtggagggggaagagcaaaaatcatgaaa 413  Q
    ||||||||| || ||||||||| || ||||||||| || ||||||| |||  || |||||||||||  ||| ||||||||||| ||| ||||    
T  37058121 acacttgcgctagttaattagcgcaggggcattttgggcatggctgcagggtgcgagtgttttgtgctgggtgaagagcaaaattcaagaaa 37058212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 24582477 - 24582514
Alignment:
Q  231 ttaactcacgcatgtgttaatttcagcgtgagttaact 268  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  24582477 ttaactcacgcaagtgttaattccagcgtgagttaact 24582514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 29110347 - 29110388
Alignment:
Q  131 cgccctgcagccatttcgaaaatggccctgcgctagttaact 172  Q
    |||||||||| |||||||||||||  ||||||||||||||||    
T  29110347 cgccctgcaggcatttcgaaaatgcacctgcgctagttaact 29110388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 42882585 - 42882548
Alignment:
Q  275 gcgtgacttaagtcatgcatgtgtaaaaaataagtcaa 312  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  42882585 gcgtgacttaagtcacgcatgtgtaaaaactaagtcaa 42882548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 27334517 - 27334557
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaac 267  Q
    |||||||||||||| ||||||||||| | ||||||||||||    
T  27334517 tgagttaactcacgtatgtgttaattgctgcgtgagttaac 27334557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 7130215 - 7130130
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtcaa 312  Q
    ||||| |||||| ||| ||||| ||| ||||||||||||||| |||| ||||||||||||||| |||||| |||||| ||||||||    
T  7130215 tgagtaaactcatgcaagtgttcattccagcgtgagttaactcacgcagcgtgacttaagtcacgcatgtataaaaactaagtcaa 7130130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 39872150 - 39872236
Alignment:
Q  224 gcatgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtc 310  Q
    ||||||||||||||||| |  |||||||||| | ||||||||||| | || |||||||||||||||  |||||||||||| ||||||    
T  39872150 gcatgagttaactcacgtaaatgttaatttctgtgtgagttaactcatgcagcgtgacttaagtcacacatgtgtaaaaattaagtc 39872236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 13461190 - 13461271
Alignment:
Q  195 gacttagtttttacacatgcgtgacttaag--------catgagttaactcacgcatgtgttaatttcagcgtgagttaact 268  Q
    ||||||||||||||||||||||||||||||        |  ||||||||||||||| |||||||||||||||||||||||||    
T  13461190 gacttagtttttacacatgcgtgacttaagtcacgccacgcgagttaactcacgcacgtgttaatttcagcgtgagttaact 13461271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 45156344 - 45156416
Alignment:
Q  231 ttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaa 303  Q
    ||||||||  |||||||||||| ||||||||| ||||| | || ||||||||||||||| |||||||||||||    
T  45156344 ttaactcattcatgtgttaattccagcgtgagataactcaagcagcgtgacttaagtcacgcatgtgtaaaaa 45156416  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 1797811 - 1797748
Alignment:
Q  240 gcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaa 303  Q
    |||||||||||||  || |||||||||||||||| |||||||||||||||  ||||||||||||    
T  1797811 gcatgtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaa 1797748  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 13461244 - 13461190
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtc 310  Q
    |||||||||||||  || |||||||||||||||| ||||||||||||| ||||||    
T  13461244 gcgtgagttaactcgcgtggcgtgacttaagtcacgcatgtgtaaaaactaagtc 13461190  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 15892151 - 15892216
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgc 292  Q
    ||||||||||||||   |||||||| || ||||||||||||| |||| ||||||||||| ||||||    
T  15892151 tgagttaactcacgttagtgttaatctctgcgtgagttaactaacgcagcgtgacttaactcatgc 15892216  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 45156074 - 45156018
Alignment:
Q  253 tcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagt 309  Q
    |||||||||||||||| | || |||||| |||||||| ||||||||||||| |||||    
T  45156074 tcagcgtgagttaactcatgcagcgtgatttaagtcacgcatgtgtaaaaattaagt 45156018  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 42432014 - 42432097
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtc 310  Q
    |||||||| |||||||||||||||   | ||||||||||||| | |  ||||||||||| ||| |||| |||||||| ||||||    
T  42432014 tgagttaattcacgcatgtgttaacacctgcgtgagttaactcatgtagcgtgacttaaatcacgcatatgtaaaaattaagtc 42432097  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 7130616 - 7130670
Alignment:
Q  256 gcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtc 310  Q
    ||||||||||||| | || ||||||||||||||| ||||| ||||||| ||||||    
T  7130616 gcgtgagttaactcatgcagcgtgacttaagtcacgcatgcgtaaaaactaagtc 7130670  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 462 - 524
Target Start/End: Original strand, 28812776 - 28812838
Alignment:
Q  462 tggtatgtgcaaataaatgtagttatttgcagcagttgaattgtgattttctgcacctttgct 524  Q
    ||||| ||||| ||| |||||||| ||||| | ||||| |||||||||||| |||||||||||    
T  28812776 tggtaagtgcatatatatgtagttctttgctgtagttggattgtgattttccgcacctttgct 28812838  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 42183636 - 42183570
Alignment:
Q  117 gcacaaaacactttcgccctgcagccatttcgaaaatggccctgcgctagttaacttacgcaagtgt 183  Q
    ||||||||||||  | |||||||||||| || |||||| || ||||||||||||||  |||||||||    
T  42183636 gcacaaaacactcgcaccctgcagccatgtccaaaatgtccatgcgctagttaactagcgcaagtgt 42183570  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 250
Target Start/End: Original strand, 32077009 - 32077038
Alignment:
Q  221 taagcatgagttaactcacgcatgtgttaa 250  Q
    ||||||||||||||||||||||||||||||    
T  32077009 taagcatgagttaactcacgcatgtgttaa 32077038  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 5345380 - 5345348
Alignment:
Q  263 ttaacttacgcggcgtgacttaagtcatgcatg 295  Q
    ||||||||||| |||||||||||||||||||||    
T  5345380 ttaacttacgcagcgtgacttaagtcatgcatg 5345348  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 18839052 - 18839008
Alignment:
Q  224 gcatgagttaactcacgcatgtgttaatttcagcgtgagttaact 268  Q
    ||||||||||| |||||||||||||||  ||||||||| ||||||    
T  18839052 gcatgagttaagtcacgcatgtgttaaactcagcgtgacttaact 18839008  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 24190907 - 24190971
Alignment:
Q  225 catgagttaactcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtca 289  Q
    |||||||||||||||| |||  |||    ||||||||||||||| |||| |||||||||||||||    
T  24190907 catgagttaactcacgtatgatttataaccagcgtgagttaactcacgcagcgtgacttaagtca 24190971  T

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Target: scaffold0027 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 49295 - 49226
Alignment:
Q  235 ctcacgcatgtgttaatttcagcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaa 304  Q
    |||||||| ||||||||| | | ||||||||||| | ||||||||| |||||||||||||||||||||||    
T  49295 ctcacgcaagtgttaattcctgtgtgagttaactcatgcggcgtgatttaagtcatgcatgtgtaaaaaa 49226  T

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Target: scaffold0027; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 401
Target Start/End: Complemental strand, 49200 - 49121
Alignment:
Q  322 acacttgcgttaattaattagcacatgggcattttcggaatggctgtaggacgcaagtgttttgtggagggggaagagca 401  Q
    ||||||||||||||||| ||| |||| || ||||| |||||| ||| ||| ||| |||||||||||  ||||||||||||    
T  49200 acacttgcgttaattaactaggacataggtatttttggaatgcctgcagggcgcgagtgttttgtgccgggggaagagca 49121  T

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Target: scaffold1107 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 1920 - 1976
Alignment:
Q  255 agcgtgagttaacttacgcggcgtgacttaagtcatgcatgtgtaaaaaataagtca 311  Q
    |||||||||||||| ||||  |||||||||||||| |||| |||||||| |||||||    
T  1920 agcgtgagttaactcacgcaacgtgacttaagtcacgcatctgtaaaaactaagtca 1976  T

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Target: scaffold0254 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 23244 - 23288
Alignment:
Q  227 tgagttaactcacgcatgtgttaatttcagcgtgagttaacttacg 272  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  23244 tgagtgaactcacgcatgtgt-aatttcaacgtgagttaacttacg 23288  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 232390 - 232427
Alignment:
Q  257 cgtgagttaacttacgcggcgtgacttaagtcatgcat 294  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  232390 cgtgagttaactcacgcggcgtgacttaagtcacgcat 232427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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