View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6365_low_11 (Length: 471)
Name: NF6365_low_11
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 436
Target Start/End: Original strand, 11737446 - 11737866
Alignment:
| Q |
13 |
aaaatagagagagagggagggagagtttcatattgattgtttttaaggatgcctttagagttgtcttgagtcttgacccacaccataatttaagtcactg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11737446 |
aaaatagagagagagggagggagagtttcatattgattgtttttaaggatgcctttagagttgtcttgagtcttgacccacaccataatttaagtc--tg |
11737543 |
T |
|
| Q |
113 |
ataagaaaataagtaatcaaacttttctataaattatcaattttataacactatctcgttacataatttatatattgtatttttattacaaccaaaagca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11737544 |
ataagaaaataagtaatcaaacttttctataaattatcaactttataacactatc--gttacataatttatatattgtatttttattacaaccaaaagca |
11737641 |
T |
|
| Q |
213 |
tattttctcccttgtgcatggaccatttcgttgcactgccttagaagtcaccattaatctaatcagtttctttagtatgaaggtgggttggtttttcac- |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11737642 |
tattttctcccttgtgcatggaccatttcgttgcactgccttagaagtcaccattaatctaatcagtttctttagtatgaaggtgggttggtttttcact |
11737741 |
T |
|
| Q |
312 |
nnnnnnnngttggagtggtttgtcactttataatgtgaaggctaaagtgtatggaaagatattttattagcagtaactaattaaagttcttaaaagaaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11737742 |
ttttttttgttggagtggtttgtcactttataatgtgaaggctaaagtgtatggaaagatattttattagcagtaactaattaaagttcttaaaagaaaa |
11737841 |
T |
|
| Q |
412 |
aagccaatgaaactttttgtttagt |
436 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11737842 |
aagccaatgaaactttttgtttagt |
11737866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University