View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_12 (Length: 467)
Name: NF6365_low_12
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 8725430 - 8725757
Alignment:
| Q |
17 |
atatacaacatcgacctccctcttcctttaacatactcggtgatgtgagacttattctaagatgtttcattccaatcaattccaacaagtctgtttccat |
116 |
Q |
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| T |
8725430 |
atatacaacatcgacctccctcttcctttaacatactcggtaatgtgagacttgttctaagatgtttcattccaatcaattccaacaagtctgtttccat |
8725529 |
T |
|
| Q |
117 |
ttgtttctgaaccatccattatggtaacatgagtgttgccacatttttgcaatgcagggtgattttattttatggattaggaataaagtacttgaatgaa |
216 |
Q |
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| T |
8725530 |
ttgtttgtgaaccatccattatggtaacatgagtgttgccacatttttgcaatgcagggtgattttcttttatggattaggaataaagtacttgaatgaa |
8725629 |
T |
|
| Q |
217 |
atgcctaggttgaattagttttgtttgtgaacttatgcatgactcataactgacagtttgatggtgaaatgtgaatctttgatttaaagggacagagaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8725630 |
atgcctaggttgaattagttttgtttgtgaacttatgcatgactcataactgacagtttgatggtgaaatgtgaatctttgatttaaagggacagagaaa |
8725729 |
T |
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| Q |
317 |
acctcctcaagaataatagaaaggggaa |
344 |
Q |
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| T |
8725730 |
acctcctcaagaataatagaaaggggaa |
8725757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 42234168 - 42234132
Alignment:
| Q |
56 |
gtgatgtgagacttattctaagatgtttcattccaat |
92 |
Q |
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||||||||| |||| |||||||||||||||||||||| |
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| T |
42234168 |
gtgatgtgatacttgttctaagatgtttcattccaat |
42234132 |
T |
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